Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

2861045 .. 2864318

Gene Structure 3274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0036200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCTCGGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAACCTCTCAGGGTGTTTAGGAGACTCACAATGGCAGCCATACTGTTGTGTTTTTTGTTGATGTATCATTTGAATCCAGCATTGGCAGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGGTCGGATTCCGATTCCGATTCCGATTCGGATTTGGATTCATGGTCGCACCCATTATCAAGTCCTTCGAAAACGAATTCGCCCGAGGAGCGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGCATTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTGGTCTGTTGAGCACAGCGCGAACACTCCAAAAGGATCTTGATCAGATAGCTGAAACTGCAGATACGTCTACTCGCAAGGATTTGAGCCGTGTTTTGACAGAGGCAACAGCAGCTTTGCTTCGCCATCCTCATCATTGTATCTCAGGCTATTCTTCTGTGGCTCCCAAAGAAAGTGTGAAGGATGCACAAAAATGCTTCAATCAAGTTTCATTGGAAGAGAGGGCTAAATTTGACGAAGAGACACTTGTTAATGTGAACAACATAAAAAGGAAAAGTACAACAAAGATACCTAAGGGATTGCAAAATCAATATATAGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

232

Amino Acids

25.46

Weight (kDa)

8.8

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	118 - 231	4.8e-34	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	443
AccII	CGCG	1 cut(s)	394
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	169, 417
AcsI	RAATTY	2 cut(s)	256, 602
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	136, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	3 cut(s)	367, 425, 488
AluI	AGCT	3 cut(s)	367, 425, 488
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	2 cut(s)	79, 608
AlwI	GGATC	2 cut(s)	169, 417
Ama87I	CYCGRG	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	98, 149, 485
ApoI	RAATTY	2 cut(s)	256, 602
AspLEI	GCGC	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	263
AxyI	CCTNAGG	2 cut(s)	154, 666
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	110, 161, 497
BccI	CCATC	1 cut(s)	507
BceAI	ACGGC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	79, 608
BfmI	CTRYAG	1 cut(s)	432
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	3 cut(s)	99, 150, 486
BlsI	GCNGC	3 cut(s)	100, 151, 487
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	1 cut(s)	547
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	25, 264
Bse21I	CCTNAGG	2 cut(s)	154, 666
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	25, 264
BseGI	GGATG	2 cut(s)	499, 562
BseJI	GATNNNNATC	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	85, 168, 531
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	110, 161, 497
Bsh1236I	CGCG	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	79, 608
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	161, 344, 409, 415
BspACI	CCGC	1 cut(s)	171
BspCNI	CTCAG	3 cut(s)	84, 167, 530
BspFNI	CGCG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	2 cut(s)	169, 417
BspT104I	TTCGAA	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	25, 264
BssMI	GATC	4 cut(s)	161, 344, 409, 415
BssT1I	CCWWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	108, 358
Bst6I	CTCTTC	2 cut(s)	585, 606
BstBI	TTCGAA	1 cut(s)	248
BstDEI	CTNAG	4 cut(s)	71, 154, 517, 666
BstF5I	GGATG	2 cut(s)	499, 562
BstFNI	CGCG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	4 cut(s)	164, 347, 412, 418
BstMAI	GTCTC	2 cut(s)	79, 608
BstMBI	GATC	4 cut(s)	161, 344, 409, 415
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 268, 431, 485
BstNSI	RCATGY	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	3 cut(s)	110, 161, 497
BstX2I	RGATCY	2 cut(s)	344, 409
BstYI	RGATCY	2 cut(s)	344, 409
Bsu36I	CCTNAGG	2 cut(s)	154, 666
BtsCI	GGATG	2 cut(s)	499, 562
BtsIMutI	CAGTG	1 cut(s)	354
CfoI	GCGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	651
CviAII	CATG	2 cut(s)	222, 333
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	4 cut(s)	71, 154, 517, 666
DpnI	GATC	4 cut(s)	163, 346, 411, 417
DpnII	GATC	4 cut(s)	161, 344, 409, 415
DraI	TTTAAA	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	585, 606
EarI	CTCTTC	2 cut(s)	585, 606
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	353
Eco81I	CCTNAGG	2 cut(s)	154, 666
Eco88I	CYCGRG	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	225, 336
FaiI	YATR	9 cut(s)	34, 53, 104, 223, 305, 334, 638, 687, 689
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FatI	CATG	2 cut(s)	221, 332
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	3 cut(s)	99, 150, 486
FokI	GGATG	2 cut(s)	486, 569
Fsp4HI	GCNGC	3 cut(s)	99, 150, 486
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	3 cut(s)	99, 150, 486
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	225, 336
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	14
HindII	GTYRAC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	8 cut(s)	87, 136, 176, 188, 194, 200, 206, 218
Hpy166II	GTNNAC	3 cut(s)	14, 444, 631
Hpy188I	TCNGA	6 cut(s)	187, 193, 199, 205, 211, 420
Hpy188III	TCNNGA	2 cut(s)	342, 413
Hpy8I	GTNNAC	3 cut(s)	14, 444, 631
HpyAV	CCTTC	2 cut(s)	255, 547
HpyCH4III	ACNGT	2 cut(s)	108, 358
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	3 cut(s)	434, 560, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 268, 431, 485
HpyF3I	CTNAG	4 cut(s)	71, 154, 517, 666
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	225, 336
HspAI	GCGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	161, 344, 409, 415
LmnI	GCTCC	2 cut(s)	268, 541
LpnPI	CCDG	6 cut(s)	58, 141, 153, 266, 356, 504
Lsp1109I	GCAGC	3 cut(s)	110, 161, 497
LweI	GCATC	1 cut(s)	547
MaeII	ACGT	1 cut(s)	440
MalI	GATC	4 cut(s)	163, 346, 411, 417
MboI	GATC	4 cut(s)	161, 344, 409, 415
MboII	GAAGA	3 cut(s)	519, 602, 623
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	2 cut(s)	344, 409
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	3 cut(s)	256, 312, 602
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	7 cut(s)	33, 78, 163, 259, 469, 513, 588
MseI	TTAA	3 cut(s)	62, 624, 697
MslI	CAYNNNNRTG	2 cut(s)	331, 565
MunI	CAATTG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	4 cut(s)	149, 268, 431, 485
NdeII	GATC	4 cut(s)	161, 344, 409, 415
NlaIII	CATG	2 cut(s)	225, 336
NlaIV	GGNNCC	1 cut(s)	537
NspI	RCATGY	1 cut(s)	336
NspV	TTCGAA	1 cut(s)	248
PciI	ACATGT	1 cut(s)	332
PfeI	GAWTC	7 cut(s)	136, 176, 188, 194, 200, 206, 218
PkrI	GCNGC	3 cut(s)	100, 151, 487
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PscI	ACATGT	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	537
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	344, 409
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
RseI	CAYNNNNRTG	2 cut(s)	331, 565
SaqAI	TTAA	3 cut(s)	62, 624, 697
SatI	GCNGC	3 cut(s)	99, 150, 486
Sau3AI	GATC	4 cut(s)	161, 344, 409, 415
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	331, 565
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	3 cut(s)	256, 312, 602
SsiI	CCGC	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	108, 358
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	248
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	3 cut(s)	256, 312, 602
TatI	WGTACW	1 cut(s)	650
TfiI	GAWTC	7 cut(s)	136, 176, 188, 194, 200, 206, 218
Tru1I	TTAA	3 cut(s)	62, 624, 697
Tru9I	TTAA	3 cut(s)	62, 624, 697
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	3 cut(s)	98, 149, 485
TspDTI	ATGAA	3 cut(s)	210, 327, 573
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	2 cut(s)	256, 602
XceI	RCATGY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.