Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

71980054 .. 71980759

Gene Structure 706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTTTTGTATTTAATCAAGTTGAAAAATGAACAGAAACCTACTGATCATTTTAGTATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATGCCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGACAAGAGAGGCAACACCCAAATCCTTACCTCCTGCACTCTTCAACCATCAAGTTACTCAATCTTTAGGAAATCAAAGTTTTGGCCTTTAGCTTCAGTTCCCGTTGCTATTGGAGGCCCCGGACTGGCACTTGGTGTTTGGTTCCGCAAGGATCTTCCAAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCTTGCTGATTATGAGTCGTCCCTCATGAAGTTGTTGATAACTAGGAAATACAAGGCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

147

Amino Acids

16.14

Weight (kDa)

9.38

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	19 - 126	6.4e-12	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	2 cut(s)	71, 310
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	289, 329
AgsI	TTSAA	2 cut(s)	25, 209
AluBI	AGCT	2 cut(s)	107, 257
AluI	AGCT	2 cut(s)	107, 257
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	248, 280, 378
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	281, 379
AsuC2I	CCSGG	2 cut(s)	151, 285
AsuHPI	GGTGA	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	220
BclI	TGATCA	3 cut(s)	46, 109, 357
BcnI	CCSGG	2 cut(s)	151, 285
BfaI	CTAG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	151, 285
BmgT120I	GGNCC	2 cut(s)	281, 379
BmiI	GGNNCC	2 cut(s)	283, 308
BmrFI	CCNGG	2 cut(s)	151, 285
BmsI	GCATC	1 cut(s)	58
BpuMI	CCSGG	2 cut(s)	151, 285
BsaJI	CCNNGG	2 cut(s)	123, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 329
Bse1I	ACTGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	123, 283
BseLI	CCNNNNNNNGG	2 cut(s)	289, 329
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	250, 282, 380
BsiSI	CCGG	2 cut(s)	150, 285
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	289, 329
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	250, 282, 380
Bsp143I	GATC	4 cut(s)	46, 109, 316, 357
BspACI	CCGC	2 cut(s)	71, 310
BspANI	GGCC	3 cut(s)	250, 282, 380
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	283, 308
BspPI	GGATC	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	123, 283
BssMI	GATC	4 cut(s)	46, 109, 316, 357
Bst6I	CTCTTC	3 cut(s)	131, 165, 210
BstKTI	GATC	4 cut(s)	49, 112, 319, 360
BstMBI	GATC	4 cut(s)	46, 109, 316, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	149, 283
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	250, 282, 380
CciI	TCATGA	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	281, 379
CviAII	CATG	3 cut(s)	113, 368, 406
CviJI	RGCY	5 cut(s)	107, 250, 257, 282, 380
CviKI_1	RGCY	5 cut(s)	107, 250, 257, 282, 380
DpnI	GATC	4 cut(s)	48, 111, 318, 359
DpnII	GATC	4 cut(s)	46, 109, 316, 357
DraIII	CACNNNGTG	1 cut(s)	299
Eam1104I	CTCTTC	3 cut(s)	131, 165, 210
EarI	CTCTTC	3 cut(s)	131, 165, 210
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	2 cut(s)	281, 379
FaeI	CATG	3 cut(s)	116, 371, 409
FaiI	YATR	9 cut(s)	59, 96, 114, 131, 356, 369, 393, 407, 442
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	3 cut(s)	112, 367, 405
FbaI	TGATCA	3 cut(s)	46, 109, 357
Fnu4HI	GCNGC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	250, 282, 380
HapII	CCGG	2 cut(s)	150, 285
Hin1II	CATG	3 cut(s)	116, 371, 409
HinfI	GANTC	2 cut(s)	61, 395
HpaII	CCGG	2 cut(s)	150, 285
HphI	GGTGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	65, 164, 406
HpyCH4V	TGCA	3 cut(s)	201, 350, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	116, 371, 409
Ksp22I	TGATCA	3 cut(s)	46, 109, 357
Kzo9I	GATC	4 cut(s)	46, 109, 316, 357
LpnPI	CCDG	4 cut(s)	163, 211, 275, 298
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	100, 218
MalI	GATC	4 cut(s)	48, 111, 318, 359
MboI	GATC	4 cut(s)	46, 109, 316, 357
MboII	GAAGA	4 cut(s)	148, 152, 197, 311
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	7 cut(s)	118, 167, 168, 205, 272, 370, 413
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	150, 285
MspR9I	CCNGG	2 cut(s)	151, 285
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	2 cut(s)	151, 285
NdeII	GATC	4 cut(s)	46, 109, 316, 357
NlaIII	CATG	3 cut(s)	116, 371, 409
NlaIV	GGNNCC	2 cut(s)	283, 308
NmeAIII	GCCGAG	1 cut(s)	148
PagI	TCATGA	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	283, 308
PspPI	GGNCC	2 cut(s)	281, 379
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	4 cut(s)	46, 109, 316, 357
Sau96I	GGNCC	2 cut(s)	281, 379
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	151, 285
SetI	ASST	5 cut(s)	43, 109, 160, 197, 259
SfaNI	GCATC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	71, 310
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	149, 283
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	45, 422
Van91I	CCANNNNNTGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	90
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.