Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Forward (+)

53708825 .. 53709222

Gene Structure 398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG280400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTGAAGAGAAATAAGATCGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCTATTGGAGGCCCCGGACTGGCACCTGGTGTTTGGTTCTGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACCATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCGTCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

82

Amino Acids

8.62

Weight (kDa)

5.43

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	22 - 67	8.1e-09	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	147
AdeI	CACNNNGTG	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	112, 152
AgsI	TTSAA	2 cut(s)	80, 233
AjnI	CCWGG	1 cut(s)	118
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	103, 201
ApeKI	GCWGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	104, 202
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	1 cut(s)	247
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	108, 120
BmgT120I	GGNCC	2 cut(s)	104, 202
BmiI	GGNNCC	3 cut(s)	106, 117, 204
BmrFI	CCNGG	2 cut(s)	108, 120
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 152
Bse1I	ACTGG	2 cut(s)	83, 117
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	112, 152
BseMI	GCAATG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	83, 117
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	105, 203
BshNI	GGYRCC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	112, 152
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	105, 203
Bsp143I	GATC	3 cut(s)	18, 139, 180
BspANI	GGCC	2 cut(s)	105, 203
BspLI	GGNNCC	3 cut(s)	106, 117, 204
BspPI	GGATC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	83, 117
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	18, 139, 180
Bst2UI	CCWGG	1 cut(s)	120
Bst6I	CTCTTC	3 cut(s)	2, 36, 81
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	3 cut(s)	21, 142, 183
BstMBI	GATC	3 cut(s)	18, 139, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	106, 118
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	105, 203
BtsCI	GGATG	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	104, 202
CsiI	ACCWGGT	1 cut(s)	118
CviAII	CATG	2 cut(s)	178, 191
CviJI	RGCY	3 cut(s)	105, 203, 220
CviKI_1	RGCY	3 cut(s)	105, 203, 220
DpnI	GATC	3 cut(s)	20, 141, 182
DpnII	GATC	3 cut(s)	18, 139, 180
DraIII	CACNNNGTG	1 cut(s)	122
Eam1104I	CTCTTC	3 cut(s)	2, 36, 81
EarI	CTCTTC	3 cut(s)	2, 36, 81
EcoO109I	RGGNCCY	2 cut(s)	104, 202
EcoRII	CCWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	181, 194
FaiI	YATR	3 cut(s)	179, 192, 216
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	177, 190
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	247
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	105, 203
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	181, 194
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	135, 173, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	181, 194
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	18, 139, 180
LpnPI	CCDG	6 cut(s)	96, 98, 105, 121, 132, 219
Lsp1109I	GCAGC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	118
MaeI	CTAG	1 cut(s)	247
MalI	GATC	3 cut(s)	20, 141, 182
MboI	GATC	3 cut(s)	18, 139, 180
MboII	GAAGA	4 cut(s)	19, 23, 68, 134
MflI	RGATCY	1 cut(s)	139
MnlI	CCTC	5 cut(s)	39, 76, 95, 193, 236
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	108, 120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	18, 139, 180
NlaIII	CATG	2 cut(s)	181, 194
NlaIV	GGNNCC	3 cut(s)	106, 117, 204
PkrI	GCNGC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	3 cut(s)	106, 117, 204
PspPI	GGNCC	2 cut(s)	104, 202
PsuI	RGATCY	1 cut(s)	139
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	18, 139, 180
Sau96I	GGNCC	2 cut(s)	104, 202
ScrFI	CCNGG	2 cut(s)	108, 120
SetI	ASST	3 cut(s)	31, 68, 121
SexAI	ACCWGGT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	106, 118
TseI	GCWGC	1 cut(s)	170
XspI	CTAG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.