Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

13137909 .. 13138966

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGCTTGCTGAAAATGCAAGGGATGCTATTCTAAGCAAGAAGTTTGAACAAGTACGTGTTAACCTACCCAATGGGGACATGGTGGGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGATGATTTTTGATGTGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATGTCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGAGAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCAATTGGAGGCCCCGGACTGGCACCTGGTGTTCGGTTCCGCAAGGATCTTCTGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCATCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

179

Amino Acids

19.16

Weight (kDa)

4.85

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	2 - 164	2.4e-48	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	406
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	18, 252
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	46, 119, 371, 524
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	3 cut(s)	76, 212, 269
AluI	AGCT	3 cut(s)	76, 212, 269
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	3 cut(s)	177, 394, 492
ApeKI	GCWGC	2 cut(s)	200, 461
ApoI	RAATTY	2 cut(s)	18, 252
AspS9I	GGNCC	2 cut(s)	395, 493
AsuC2I	CCSGG	2 cut(s)	313, 399
AsuHPI	GGTGA	2 cut(s)	179, 307
BanI	GGYRCC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	187, 448
BccI	CCATC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	3 cut(s)	205, 271, 471
BcnI	CCSGG	2 cut(s)	313, 399
BfaI	CTAG	1 cut(s)	538
BisI	GCNGC	2 cut(s)	201, 462
BlsI	GCNGC	2 cut(s)	202, 463
Bme1390I	CCNGG	3 cut(s)	313, 399, 411
BmgT120I	GGNCC	2 cut(s)	395, 493
BmiI	GGNNCC	4 cut(s)	397, 408, 422, 495
BmrFI	CCNGG	3 cut(s)	313, 399, 411
BmsI	GCATC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	313, 399
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	3 cut(s)	169, 374, 408
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	100, 342, 512
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	169, 374, 408
BseXI	GCAGC	2 cut(s)	187, 448
BshFI	GGCC	3 cut(s)	179, 396, 494
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	312, 399
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	179, 396, 494
Bsp143I	GATC	4 cut(s)	205, 271, 430, 471
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	3 cut(s)	179, 396, 494
BspCNI	CTCAG	1 cut(s)	429
BspLI	GGNNCC	4 cut(s)	397, 408, 422, 495
BspPI	GGATC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	3 cut(s)	169, 374, 408
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	4 cut(s)	205, 271, 430, 471
Bst2UI	CCWGG	1 cut(s)	411
Bst6I	CTCTTC	4 cut(s)	293, 326, 327, 372
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	78, 193
BstDEI	CTNAG	2 cut(s)	104, 437
BstF5I	GGATG	3 cut(s)	100, 342, 512
BstKTI	GATC	4 cut(s)	208, 274, 433, 474
BstMBI	GATC	4 cut(s)	205, 271, 430, 471
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 95, 197, 209, 458
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	311, 397, 409
BstV1I	GCAGC	2 cut(s)	187, 448
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	3 cut(s)	179, 396, 494
BtsCI	GGATG	3 cut(s)	100, 342, 512
Cac8I	GCNNGC	2 cut(s)	78, 193
Cfr13I	GGNCC	2 cut(s)	395, 493
CsiI	ACCWGGT	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	3 cut(s)	151, 275, 482
CviJI	RGCY	9 cut(s)	55, 76, 179, 200, 212, 269, 396, 494, 511
CviKI_1	RGCY	9 cut(s)	55, 76, 179, 200, 212, 269, 396, 494, 511
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	2 cut(s)	104, 437
DpnI	GATC	4 cut(s)	207, 273, 432, 473
DpnII	GATC	4 cut(s)	205, 271, 430, 471
DraIII	CACNNNGTG	1 cut(s)	413
Eam1104I	CTCTTC	4 cut(s)	293, 326, 327, 372
EarI	CTCTTC	4 cut(s)	293, 326, 327, 372
EcoO109I	RGGNCCY	2 cut(s)	395, 493
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	3 cut(s)	154, 278, 485
FaiI	YATR	9 cut(s)	12, 152, 162, 258, 276, 293, 470, 483, 507
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	150, 274, 481
FbaI	TGATCA	3 cut(s)	205, 271, 471
Fnu4HI	GCNGC	2 cut(s)	201, 462
FokI	GGATG	3 cut(s)	107, 329, 499
Fsp4HI	GCNGC	2 cut(s)	201, 462
FspBI	CTAG	1 cut(s)	538
GluI	GCNGC	2 cut(s)	201, 462
HaeIII	GGCC	3 cut(s)	179, 396, 494
HapII	CCGG	2 cut(s)	312, 399
Hin1II	CATG	3 cut(s)	154, 278, 485
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	36
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	312, 399
HphI	GGTGA	2 cut(s)	179, 307
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	2 cut(s)	217, 326
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	48, 127
HpyCH4V	TGCA	5 cut(s)	89, 195, 386, 464, 481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 95, 197, 209, 458
HpyF3I	CTNAG	2 cut(s)	104, 437
HpySE526I	ACGT	2 cut(s)	48, 127
Hsp92II	CATG	3 cut(s)	154, 278, 485
Ksp22I	TGATCA	3 cut(s)	205, 271, 471
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	205, 271, 430, 471
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	9 cut(s)	65, 150, 325, 387, 389, 396, 412, 423, 510
Lsp1109I	GCAGC	2 cut(s)	187, 448
LweI	GCATC	1 cut(s)	85
MabI	ACCWGGT	1 cut(s)	409
MaeI	CTAG	1 cut(s)	538
MaeII	ACGT	2 cut(s)	48, 127
MaeIII	GTNAC	2 cut(s)	167, 262
MalI	GATC	4 cut(s)	207, 273, 432, 473
MboI	GATC	4 cut(s)	205, 271, 430, 471
MboII	GAAGA	5 cut(s)	310, 314, 343, 359, 425
MfeI	CAATTG	2 cut(s)	183, 387
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	4 cut(s)	18, 183, 252, 387
MnlI	CCTC	7 cut(s)	169, 280, 330, 367, 386, 484, 527
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	165, 279
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	312, 399
MspR9I	CCNGG	3 cut(s)	313, 399, 411
MunI	CAATTG	2 cut(s)	183, 387
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	5 cut(s)	86, 95, 197, 209, 458
NciI	CCSGG	2 cut(s)	313, 399
NdeII	GATC	4 cut(s)	205, 271, 430, 471
NlaIII	CATG	3 cut(s)	154, 278, 485
NlaIV	GGNNCC	4 cut(s)	397, 408, 422, 495
NmuCI	GTSAC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	202, 463
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	397, 408, 422, 495
PspPI	GGNCC	2 cut(s)	395, 493
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	2 cut(s)	165, 279
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	201, 462
Sau3AI	GATC	4 cut(s)	205, 271, 430, 471
Sau96I	GGNCC	2 cut(s)	395, 493
ScrFI	CCNGG	3 cut(s)	313, 399, 411
SetI	ASST	9 cut(s)	51, 78, 130, 138, 214, 271, 322, 359, 412
SexAI	ACCWGGT	1 cut(s)	409
SfaNI	GCATC	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	165, 279
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	18, 183, 252, 387
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	311, 397, 409
TaiI	ACGT	2 cut(s)	51, 130
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	18, 183, 252, 387
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	200, 461
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	77
XapI	RAATTY	2 cut(s)	18, 252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.