Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

28759664 .. 28761927

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033543

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGCTGTGATGAACTTGATGCACTTTCAACTGGCCCGTTTGAGAATGACTGGTCAGTTGTAAAACGAGGATGGGATGTCCAAGTTCTCAGTGAAGCCCCCTATAAATTTAAGAATGTTGTTGAAGCTATCAAGACATTAAGAGCAGAACCAAATGCCAATGACCAGTATCTACCTCCTTTTGTTATTGTTGATGATAGTGGAAAGGCTGTGGGCCCAATAGTTGATGGTGATGATGTTGTTGTAACATTCAACTTCCGAGCAGATCGTATGGTCATGGCTGCTAAGGCATTTGAGTATGCAGATTTTGATAAATTTGATAGAGTTCGAGTTCCTAAAATCTGTTATGCTGGTATGCTTCAATATGATGGTGAGCTGAAGCTTCCAACCTGTTACCTTGTAGAACCCCCAGCGATTGATAGAACATCCAGGGAATATCTAACTTACAACGGTGTCCGTACTTTGCCTGCAGGTGATGAGACTGTAAAATTTGGCCACGTTACTTTCTTCTGGAATGGGAATCGCTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTGGAAATTCCAAGTGATAATGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTAATAAAAAATATGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATGCTGAGGATATGGTGAAGAGAAATAAGACCAGGCAACCTCTTCTTGACAAGAGTGGCATCATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCTATTGGAGGCCCCAGACTGGCACGTGGTGTTCGGTTCCGCAAGGATCTTTCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAACCTGCATGGATTTGAGGCCCCTGCTGACTATAAGCCGTCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

326

Amino Acids

36.1

Weight (kDa)

5.31

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	15 - 123	1.1e-19	BPG-independent PGAM N-terminus (iPGM_N)
Metalloenzyme	PF01676	133 - 228	4.8e-18	Metalloenzyme superfamily
Metalloenzyme	PF01676	226 - 310	1.2e-16	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	2 cut(s)	461, 924
AciI	CCGC	1 cut(s)	862
AclWI	GGATC	1 cut(s)	876
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	5 cut(s)	107, 314, 488, 564, 690
AcuI	CTGAAG	1 cut(s)	398
AcvI	CACGTG	1 cut(s)	848
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	547, 841
AgsI	TTSAA	8 cut(s)	30, 125, 253, 362, 592, 665, 809, 962
AjnI	CCWGG	2 cut(s)	428, 749
AluBI	AGCT	4 cut(s)	128, 376, 382, 707
AluI	AGCT	4 cut(s)	128, 376, 382, 707
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	876
AoxI	GGCC	5 cut(s)	34, 214, 493, 832, 930
ApaI	GGGCCC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	281, 899
ApoI	RAATTY	5 cut(s)	107, 314, 488, 564, 690
AspS9I	GGNCC	5 cut(s)	35, 214, 215, 833, 931
AsuHPI	GGTGA	4 cut(s)	242, 383, 485, 745
BaeGI	GKGCMC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	218
BbrPI	CACGTG	1 cut(s)	848
BbvCI	CCTCAGC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	268, 886
BccI	CCATC	3 cut(s)	66, 221, 362
BceAI	ACGGC	1 cut(s)	934
BciT130I	CCWGG	2 cut(s)	430, 751
BclI	TGATCA	2 cut(s)	709, 909
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	976
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	2 cut(s)	461, 924
BisI	GCNGC	2 cut(s)	282, 900
BlsI	GCNGC	2 cut(s)	283, 901
Bme1390I	CCNGG	2 cut(s)	430, 751
BmgT120I	GGNCC	5 cut(s)	35, 214, 215, 833, 931
BmiI	GGNNCC	4 cut(s)	216, 835, 860, 933
BmrFI	CCNGG	2 cut(s)	430, 751
BmsI	GCATC	4 cut(s)	10, 521, 631, 786
Bpu10I	CCTNAGC	2 cut(s)	285, 723
BsaAI	YACGTR	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 841
Bse1I	ACTGG	5 cut(s)	37, 56, 166, 812, 846
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	430, 751
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	6 cut(s)	77, 82, 425, 536, 646, 780
BseLI	CCNNNNNNNGG	2 cut(s)	547, 841
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	3 cut(s)	103, 641, 714
BseNI	ACTGG	5 cut(s)	37, 56, 166, 812, 846
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	268, 886
BseYI	CCCAGC	1 cut(s)	409
BshFI	GGCC	5 cut(s)	36, 216, 495, 834, 932
BslFI	GGGAC	1 cut(s)	937
BslI	CCNNNNNNNGG	2 cut(s)	547, 841
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	937
BsnI	GGCC	5 cut(s)	36, 216, 495, 834, 932
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	4 cut(s)	265, 709, 868, 909
BspACI	CCGC	1 cut(s)	862
BspANI	GGCC	5 cut(s)	36, 216, 495, 834, 932
BspCNI	CTCAG	3 cut(s)	102, 642, 715
BspLI	GGNNCC	4 cut(s)	216, 835, 860, 933
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	2 cut(s)	461, 924
BspPI	GGATC	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	819
BsrI	ACTGG	5 cut(s)	37, 56, 166, 812, 846
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	265, 709, 868, 909
Bst2UI	CCWGG	2 cut(s)	430, 751
Bst4CI	ACNGT	2 cut(s)	452, 484
Bst6I	CTCTTC	3 cut(s)	731, 765, 810
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	89, 285, 650, 723
BstF5I	GGATG	6 cut(s)	77, 82, 425, 536, 646, 780
BstKTI	GATC	4 cut(s)	268, 712, 871, 912
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	4 cut(s)	265, 709, 868, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 531, 632, 641, 896
BstNI	CCWGG	2 cut(s)	430, 751
BstSCI	CCNGG	2 cut(s)	428, 749
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	268, 886
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BsuRI	GGCC	5 cut(s)	36, 216, 495, 834, 932
BtsCI	GGATG	6 cut(s)	77, 82, 425, 536, 646, 780
BtsIMutI	CAGTG	1 cut(s)	97
BveI	ACCTGC	2 cut(s)	461, 924
Cac8I	GCNNGC	1 cut(s)	468
Cfr13I	GGNCC	5 cut(s)	35, 214, 215, 833, 931
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	3 cut(s)	277, 713, 920
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	4 cut(s)	89, 285, 650, 723
DpnI	GATC	4 cut(s)	267, 711, 870, 911
DpnII	GATC	4 cut(s)	265, 709, 868, 909
DraIII	CACNNNGTG	1 cut(s)	851
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	3 cut(s)	731, 765, 810
EarI	CTCTTC	3 cut(s)	731, 765, 810
Eco24I	GRGCYC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	398
Eco72I	CACGTG	1 cut(s)	848
EcoO109I	RGGNCCY	2 cut(s)	833, 931
EcoRII	CCWGG	2 cut(s)	428, 749
EcoT38I	GRGCYC	1 cut(s)	218
FaeI	CATG	3 cut(s)	280, 716, 923
FaqI	GGGAC	1 cut(s)	937
FatI	CATG	3 cut(s)	276, 712, 919
FbaI	TGATCA	2 cut(s)	709, 909
Fnu4HI	GCNGC	2 cut(s)	282, 900
FokI	GGATG	6 cut(s)	84, 89, 412, 543, 653, 767
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	282, 900
FspBI	CTAG	1 cut(s)	976
GluI	GCNGC	2 cut(s)	282, 900
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	5 cut(s)	36, 216, 495, 834, 932
Hin1II	CATG	3 cut(s)	280, 716, 923
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	520, 582
HphI	GGTGA	4 cut(s)	242, 383, 485, 745
Hpy188I	TCNGA	2 cut(s)	260, 651
Hpy188III	TCNNGA	4 cut(s)	133, 511, 528, 764
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	2 cut(s)	452, 484
HpyCH4IV	ACGT	3 cut(s)	498, 594, 847
HpyCH4V	TGCA	5 cut(s)	23, 302, 470, 902, 919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 531, 632, 641, 896
HpyF3I	CTNAG	4 cut(s)	89, 285, 650, 723
HpySE526I	ACGT	3 cut(s)	498, 594, 847
Hsp92II	CATG	3 cut(s)	280, 716, 923
Ksp22I	TGATCA	2 cut(s)	709, 909
Kzo9I	GATC	4 cut(s)	265, 709, 868, 909
Lsp1109I	GCAGC	2 cut(s)	268, 886
LweI	GCATC	4 cut(s)	10, 521, 631, 786
MaeI	CTAG	1 cut(s)	976
MaeII	ACGT	3 cut(s)	498, 594, 847
MaeIII	GTNAC	4 cut(s)	244, 392, 499, 700
MalI	GATC	4 cut(s)	267, 711, 870, 911
MboI	GATC	4 cut(s)	265, 709, 868, 909
MboII	GAAGA	4 cut(s)	499, 748, 752, 797
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	5 cut(s)	107, 314, 488, 564, 690
MluNI	TGGCCA	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	9 cut(s)	62, 186, 544, 718, 768, 805, 824, 922, 965
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	3 cut(s)	111, 140, 537
MslI	CAYNNNNRTG	1 cut(s)	717
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	707
MspR9I	CCNGG	2 cut(s)	430, 751
MvaI	CCWGG	2 cut(s)	430, 751
MwoI	GCNNNNNNNGC	5 cut(s)	287, 531, 632, 641, 896
NdeII	GATC	4 cut(s)	265, 709, 868, 909
NlaIII	CATG	3 cut(s)	280, 716, 923
NlaIV	GGNNCC	4 cut(s)	216, 835, 860, 933
PaqCI	CACCTGC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	520, 582
PkrI	GCNGC	2 cut(s)	283, 901
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
Ppu21I	YACGTR	1 cut(s)	848
Psp6I	CCWGG	2 cut(s)	428, 749
PspCI	CACGTG	1 cut(s)	848
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	428, 749
PspN4I	GGNNCC	4 cut(s)	216, 835, 860, 933
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	5 cut(s)	35, 214, 215, 833, 931
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	868
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	111, 140, 537
SatI	GCNGC	2 cut(s)	282, 900
Sau3AI	GATC	4 cut(s)	265, 709, 868, 909
Sau96I	GGNCC	5 cut(s)	35, 214, 215, 833, 931
SbfI	CCTGCAGG	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	430, 751
SdaI	CCTGCAGG	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	218
SfaNI	GCATC	4 cut(s)	10, 521, 631, 786
SfcI	CTRYAG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	717
Sse8387I	CCTGCAGG	1 cut(s)	472
Sse9I	AATT	5 cut(s)	107, 314, 488, 564, 690
SsiI	CCGC	1 cut(s)	862
SspMI	CTAG	1 cut(s)	976
StyD4I	CCNGG	2 cut(s)	428, 749
TaaI	ACNGT	2 cut(s)	452, 484
TaiI	ACGT	3 cut(s)	501, 597, 850
TaqI	TCGA	2 cut(s)	328, 875
TasI	AATT	5 cut(s)	107, 314, 488, 564, 690
TfiI	GAWTC	2 cut(s)	520, 582
Tru1I	TTAA	3 cut(s)	111, 140, 537
Tru9I	TTAA	3 cut(s)	111, 140, 537
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	281, 899
TspDTI	ATGAA	2 cut(s)	27, 623
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	5 cut(s)	107, 314, 488, 564, 690
XspI	CTAG	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.