Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

2858284 .. 2858952

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0036100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCTCCTCGGAGAAGAATCACTTCACATCAGAAGTTCTGTTTATACACCTTATTTTGCTTATGCCTCTCAGTCAGAAGTCAACCCAACTCAAGACCCACTTGAGACCATCGCCAATGAAATATTATCGAATATTCTCAAGGGACTGAAAACACCTGGAGTAGAGAACCCGCCATTTGATTCTATCTTCAATGAAGCATTCTCGAACGCTCTCAAGGGACTCAAAACATCTCCAAAAGAGAATCCTAAACCACTTGAGGCTATCTTCAATGAAATATTAGCGAGTGCTCTCAAGGTACTCAAGACACCTGCCATGGCTGCCGTGTTGTTGATTTTGTTATTGACGTTTAACCCGAACTCGTCGTGGGCCGCCTCGGGTGGTCGGGTCGGGGGAAGCTCGTTCTCCTCACGCTCTTCGTCGTCATCCTCGTCAGGGTCGTCGGCTTACTCTTCTTCATCATCGTCGTATAGATCTTCAAGTTCTTCACCTTCGTATTCGTACACGTCGTATTCGTCATATTCAACGCCTTCATCATCGAGTTCTTCGTCTACTACCTCGATGTCCGAGGCCGTATTTTGGCTGTGCATAATCCTTCTGATTTTGGTTCTGTTGGCTGTCTCTGTGTCCTCTGTGGGCGCGGGCTCGGGCGCTGGCTTGGCCGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

222

Amino Acids

23.11

Weight (kDa)

5.83

Isoelectric Point (pI)

66.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	548
AccII	CGCG	1 cut(s)	638
AciI	CCGC	4 cut(s)	170, 369, 638, 660
AcoI	YGGCCR	1 cut(s)	657
AfaI	GTAC	2 cut(s)	297, 500
AfiI	CCNNNNNNNGG	2 cut(s)	432, 576
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	4 cut(s)	190, 268, 477, 522
AjiI	CACGTC	1 cut(s)	504
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	98, 622
Ama87I	CYCGRG	2 cut(s)	373, 643
AoxI	GGCC	3 cut(s)	366, 567, 657
ApeKI	GCWGC	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	2 cut(s)	638, 650
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	477
AvaI	CYCGRG	2 cut(s)	373, 643
BanII	GRGCYC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	305, 554
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	98, 622
BfoI	RGCGCY	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	3 cut(s)	318, 369, 660
BlsI	GCNGC	3 cut(s)	319, 370, 661
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	2 cut(s)	373, 643
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	7 cut(s)	75, 122, 122, 197, 275, 275, 284
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	7, 312, 372, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 576
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	4 cut(s)	7, 312, 372, 564
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	2 cut(s)	432, 576
BseMII	CTCAG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	3 cut(s)	368, 569, 659
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	2 cut(s)	373, 643
BslFI	GGGAC	2 cut(s)	156, 231
BslI	CCNNNNNNNGG	2 cut(s)	432, 576
BsmAI	GTCTC	2 cut(s)	98, 622
BsmFI	GGGAC	2 cut(s)	156, 231
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	368, 569, 659
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	373, 643
Bsp1286I	GDGCHC	2 cut(s)	289, 644
Bsp143I	GATC	1 cut(s)	470
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	4 cut(s)	170, 369, 638, 660
BspANI	GGCC	3 cut(s)	368, 569, 659
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	638
BspMI	ACCTGC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	98
BssECI	CCNNGG	4 cut(s)	7, 312, 372, 564
BssMI	GATC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	156
Bst6I	CTCTTC	2 cut(s)	418, 454
BstC8I	GCNNGC	2 cut(s)	640, 652
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	2 cut(s)	638, 650
BstKTI	GATC	1 cut(s)	473
BstMAI	GTCTC	2 cut(s)	98, 622
BstMBI	GATC	1 cut(s)	470
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 656
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	3 cut(s)	368, 569, 659
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	94
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	422
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	640, 652
CfoI	GCGC	2 cut(s)	638, 650
Cfr13I	GGNCC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	296, 499
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	2 cut(s)	296, 499
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	472
DpnII	GATC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	657
Eam1104I	CTCTTC	2 cut(s)	418, 454
EarI	CTCTTC	2 cut(s)	418, 454
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	98
Eco88I	CYCGRG	2 cut(s)	373, 643
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	316
FaiI	YATR	7 cut(s)	45, 63, 314, 468, 517, 587, 664
FalI	AAGNNNNNCTT	3 cut(s)	38, 84, 116
FaqI	GGGAC	2 cut(s)	156, 231
FatI	CATG	1 cut(s)	312
FauI	CCCGC	2 cut(s)	177, 631
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	3 cut(s)	318, 369, 660
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	318, 369, 660
GlaI	GCGC	2 cut(s)	637, 649
GluI	GCNGC	3 cut(s)	318, 369, 660
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	368, 569, 659
HhaI	GCGC	2 cut(s)	638, 650
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	2 cut(s)	636, 648
HinP1I	GCGC	2 cut(s)	636, 648
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	4 cut(s)	17, 179, 219, 241
HphI	GGTGA	1 cut(s)	477
Hpy166II	GTNNAC	3 cut(s)	82, 501, 549
Hpy188I	TCNGA	5 cut(s)	11, 32, 76, 565, 597
Hpy188III	TCNNGA	3 cut(s)	92, 202, 301
Hpy8I	GTNNAC	3 cut(s)	82, 501, 549
Hpy99I	CGWCG	5 cut(s)	364, 421, 442, 466, 508
HpyAV	CCTTC	3 cut(s)	498, 537, 602
HpyCH4IV	ACGT	2 cut(s)	344, 503
HpyCH4V	TGCA	1 cut(s)	585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 656
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	344, 503
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	2 cut(s)	636, 648
Kzo9I	GATC	1 cut(s)	470
LguI	GCTCTTC	1 cut(s)	418
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	5 cut(s)	141, 168, 321, 417, 636
Lsp1109I	GCAGC	1 cut(s)	304
MaeII	ACGT	2 cut(s)	344, 503
MalI	GATC	1 cut(s)	472
MboI	GATC	1 cut(s)	470
MboII	GAAGA	9 cut(s)	26, 178, 256, 405, 441, 444, 465, 474, 534
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	289, 644
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	9 cut(s)	17, 76, 250, 382, 415, 436, 559, 565, 637
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	2 cut(s)	348, 667
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	317, 656
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	470
NlaIII	CATG	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	6 cut(s)	350, 425, 434, 503, 509, 542
PctI	GAATGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	3 cut(s)	17, 179, 241
PkrI	GCNGC	3 cut(s)	319, 370, 661
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	297, 500
RsaNI	GTAC	2 cut(s)	296, 499
SapI	GCTCTTC	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	348, 667
SatI	GCNGC	3 cut(s)	318, 369, 660
Sau3AI	GATC	1 cut(s)	470
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	2 cut(s)	289, 644
SetI	ASST	9 cut(s)	52, 157, 297, 310, 347, 398, 490, 506, 557
SmlI	CTYRAG	7 cut(s)	90, 101, 137, 212, 254, 290, 299
SmoI	CTYRAG	7 cut(s)	90, 101, 137, 212, 254, 290, 299
SsiI	CCGC	4 cut(s)	170, 369, 638, 660
SspI	AATATT	3 cut(s)	123, 133, 276
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	2 cut(s)	347, 506
TaqI	TCGA	4 cut(s)	128, 203, 536, 557
TauI	GCSGC	2 cut(s)	371, 662
TfiI	GAWTC	3 cut(s)	17, 179, 241
Tru1I	TTAA	2 cut(s)	348, 667
Tru9I	TTAA	2 cut(s)	348, 667
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	5 cut(s)	132, 207, 285, 444, 519
XmiI	GTMKAC	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.