Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

247441 .. 251245

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0003600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAAAGCCGCTATGATCGCTGCACAAACCATCCAGCTGGGTCATAATGATATCGTTGTTGCTGGTGGCATGGAAAGCATGTCCAATGCCCCCAAGTATCTACCAAATGCCAGACAGGGATCCCGGTTAGGACATGATAATATTGTTGATGGCATGCTTAAGGATGGTTTGTGGGATGTCTATAATGACTTTGGAATGGGAGTTTGTGCAGAAATATGTGCTGACAAATACTCCATATCCAGGGAACACCAGGATGGTTATGCTATTCGCAGTTTTGAGCGTGGAATTTCTGCACAAGATGCTGGTCTCTTTGCATGGGAAATAGTTCCGGTTGAAGTTCCTGGGGGACGGGGAAAGCCTTCCTCAATTGTTGACAAGGATGATGGTTTACAACAGTTTGATGCTGCGAAATTGAAAAAGCTTCGACCAAGTTTTAAGAAGAGTGGGGGTTCAGTTACTGCTGGCAATGCTTCTATCATAAGTGATGGTGCAGCTGCATTAGTGCTAGTGAGTGGGGAGAAGGCACTTGAACTTGGGTTACAAGTAATTGCTAAGATAAAAGGATTTGCTGATGCAGCTCAGGCACCTGAGTGGTTTACAACTGCTCCTGCCCTTGCAATACCAAGGGCTATTTCAAATGCTGGTTTGGAGGCTTCTCAAATAGATTACTACGAAATAAATGAGGCATTTGCTGTGGTGGCTCTTGCAAATCAAAAGCTCCTTGGCCTTAATCCTGAGAGAGTTAATGCCCATGGTGGAGCTGTATCTTTGGGACATCCATTGGGATGCAGTGGAGCTCGTATCTTGGTCACTTTATTAGGGGTGTTGAGGCAGAAAAATGGGAGGTATGGGGTTGGTGGTATCTGCAATGGGGGAGGTGGTGCATCTGCCTTTGTACTTGAGCTCATGCCAATTGCGAGAGTGAGACCTTCCAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

313

Amino Acids

32.77

Weight (kDa)

7.67

Isoelectric Point (pI)

28.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	1 - 172	6.2e-57	Thiolase, N-terminal domain
Thiolase_C	PF02803	181 - 301	1.4e-43	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	114, 127
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	1 cut(s)	897
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	335, 415, 530, 636
AjnI	CCWGG	4 cut(s)	239, 249, 340, 932
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AleI	CACNNNNGTG	1 cut(s)	589
AluBI	AGCT	8 cut(s)	37, 421, 494, 578, 718, 761, 797, 904
AluI	AGCT	8 cut(s)	37, 421, 494, 578, 718, 761, 797, 904
Alw21I	GWGCWC	2 cut(s)	799, 906
Alw26I	GTCTC	2 cut(s)	311, 919
AlwI	GGATC	2 cut(s)	114, 127
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	724
ApeKI	GCWGC	5 cut(s)	20, 404, 491, 494, 575
ApoI	RAATTY	1 cut(s)	285
Asp700I	GAANNNNTTC	2 cut(s)	324, 358
AsuC2I	CCSGG	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	799, 906
Bbv12I	GWGCWC	2 cut(s)	799, 906
BbvI	GCAGC	5 cut(s)	7, 391, 481, 503, 587
BccI	CCATC	6 cut(s)	38, 143, 158, 248, 377, 479
BciT130I	CCWGG	4 cut(s)	241, 251, 342, 934
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	311, 919
BfaI	CTAG	1 cut(s)	506
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	6 cut(s)	9, 21, 405, 492, 495, 576
BlsI	GCNGC	6 cut(s)	10, 22, 406, 493, 496, 577
Bme1390I	CCNGG	5 cut(s)	124, 241, 251, 342, 934
BmiI	GGNNCC	2 cut(s)	121, 585
BmrFI	CCNGG	5 cut(s)	124, 241, 251, 342, 934
BmsI	GCATC	5 cut(s)	289, 391, 562, 776, 893
Bpu10I	CCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	124
BsaI	GGTCTC	2 cut(s)	311, 919
BsaJI	CCNNGG	5 cut(s)	240, 341, 623, 721, 751
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 589, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse3DI	GCAATG	2 cut(s)	472, 874
BseBI	CCWGG	4 cut(s)	241, 251, 342, 934
BseDI	CCNNGG	5 cut(s)	240, 341, 623, 721, 751
BseGI	GGATG	7 cut(s)	30, 169, 181, 259, 385, 775, 791
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	2 cut(s)	472, 874
BseMII	CTCAG	3 cut(s)	579, 593, 726
BseXI	GCAGC	5 cut(s)	7, 391, 481, 503, 587
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	4 cut(s)	6, 228, 276, 510
BshFI	GGCC	1 cut(s)	726
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	799, 906
BsiSI	CCGG	2 cut(s)	124, 329
BslFI	GGGAC	2 cut(s)	360, 786
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	311, 919
BsmFI	GGGAC	2 cut(s)	360, 786
BsnI	GGCC	1 cut(s)	726
Bso31I	GGTCTC	2 cut(s)	311, 919
Bsp1286I	GDGCHC	2 cut(s)	799, 906
Bsp143I	GATC	2 cut(s)	15, 119
Bsp19I	CCATGG	1 cut(s)	751
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	726
BspCNI	CTCAG	3 cut(s)	580, 592, 727
BspLI	GGNNCC	2 cut(s)	121, 585
BspPI	GGATC	2 cut(s)	114, 127
BspT107I	GGYRCC	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	2 cut(s)	311, 919
BsrDI	GCAATG	2 cut(s)	472, 874
BssECI	CCNNGG	5 cut(s)	240, 341, 623, 721, 751
BssMI	GATC	2 cut(s)	15, 119
BssT1I	CCWWGG	3 cut(s)	623, 721, 751
Bst2UI	CCWGG	4 cut(s)	241, 251, 342, 934
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	434
BstAFI	CTTAAG	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	155, 463
BstDEI	CTNAG	4 cut(s)	552, 579, 588, 735
BstDSI	CCRYGG	1 cut(s)	751
BstF5I	GGATG	7 cut(s)	30, 169, 181, 259, 385, 775, 791
BstKTI	GATC	2 cut(s)	18, 122
BstMAI	GTCTC	2 cut(s)	311, 919
BstMBI	GATC	2 cut(s)	15, 119
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 75, 299, 467, 575, 581, 698
BstNI	CCWGG	4 cut(s)	241, 251, 342, 934
BstNSI	RCATGY	2 cut(s)	82, 157
BstSCI	CCNGG	5 cut(s)	122, 239, 249, 340, 932
BstV1I	GCAGC	5 cut(s)	7, 391, 481, 503, 587
BstX2I	RGATCY	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	726
BtgI	CCRYGG	1 cut(s)	751
BtsCI	GGATG	7 cut(s)	30, 169, 181, 259, 385, 775, 791
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	1 cut(s)	796
Cac8I	GCNNGC	2 cut(s)	155, 463
CaiI	CAGNNNCTG	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	896
CviAII	CATG	7 cut(s)	70, 79, 134, 154, 315, 752, 907
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	4 cut(s)	552, 579, 588, 735
DpnI	GATC	2 cut(s)	17, 121
DpnII	GATC	2 cut(s)	15, 119
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Ecl136II	GAGCTC	2 cut(s)	797, 904
Eco130I	CCWWGG	3 cut(s)	623, 721, 751
Eco24I	GRGCYC	2 cut(s)	799, 906
Eco31I	GGTCTC	2 cut(s)	311, 919
Eco32I	GATATC	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	797, 904
EcoICRI	GAGCTC	2 cut(s)	797, 904
EcoRII	CCWGG	4 cut(s)	239, 249, 340, 932
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	3 cut(s)	623, 721, 751
EcoT38I	GRGCYC	2 cut(s)	799, 906
ErhI	CCWWGG	3 cut(s)	623, 721, 751
FaeI	CATG	7 cut(s)	73, 82, 137, 157, 318, 755, 910
FaqI	GGGAC	2 cut(s)	360, 786
FatI	CATG	7 cut(s)	69, 78, 133, 153, 314, 751, 906
Fnu4HI	GCNGC	6 cut(s)	9, 21, 405, 492, 495, 576
FokI	GGATG	7 cut(s)	17, 176, 188, 266, 392, 762, 798
FriOI	GRGCYC	2 cut(s)	799, 906
Fsp4HI	GCNGC	6 cut(s)	9, 21, 405, 492, 495, 576
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	6 cut(s)	9, 21, 405, 492, 495, 576
GsaI	CCCAGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	726
HapII	CCGG	2 cut(s)	124, 329
Hin1II	CATG	7 cut(s)	73, 82, 137, 157, 318, 755, 910
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	419
HpaII	CCGG	2 cut(s)	124, 329
Hpy166II	GTNNAC	3 cut(s)	373, 389, 597
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	3 cut(s)	373, 389, 597
HpyAV	CCTTC	3 cut(s)	369, 514, 939
HpyCH4III	ACNGT	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 75, 299, 467, 575, 581, 698
HpyF3I	CTNAG	4 cut(s)	552, 579, 588, 735
Hsp92II	CATG	7 cut(s)	73, 82, 137, 157, 318, 755, 910
Kzo9I	GATC	2 cut(s)	15, 119
LmnI	GCTCC	4 cut(s)	610, 723, 758, 794
Lsp1109I	GCAGC	5 cut(s)	7, 391, 481, 503, 587
LweI	GCATC	5 cut(s)	289, 391, 562, 776, 893
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	3 cut(s)	454, 537, 808
MalI	GATC	2 cut(s)	17, 121
MboI	GATC	2 cut(s)	15, 119
MboII	GAAGA	1 cut(s)	451
MfeI	CAATTG	2 cut(s)	366, 912
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	799, 906
MluCI	AATT	5 cut(s)	285, 366, 410, 546, 912
MnlI	CCTC	6 cut(s)	373, 643, 676, 822, 837, 869
MroXI	GAANNNNTTC	2 cut(s)	324, 358
MseI	TTAA	4 cut(s)	159, 435, 729, 744
MslI	CAYNNNNRTG	3 cut(s)	252, 589, 784
MspA1I	CMGCKG	2 cut(s)	37, 494
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	2 cut(s)	124, 329
MspR9I	CCNGG	5 cut(s)	124, 241, 251, 342, 934
MunI	CAATTG	2 cut(s)	366, 912
MvaI	CCWGG	4 cut(s)	241, 251, 342, 934
MwoI	GCNNNNNNNGC	7 cut(s)	17, 75, 299, 467, 575, 581, 698
NciI	CCSGG	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	751
NdeII	GATC	2 cut(s)	15, 119
NlaIII	CATG	7 cut(s)	73, 82, 137, 157, 318, 755, 910
NlaIV	GGNNCC	2 cut(s)	121, 585
NmuCI	GTSAC	1 cut(s)	808
NspI	RCATGY	2 cut(s)	82, 157
OliI	CACNNNNGTG	1 cut(s)	589
PaeI	GCATGC	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	324, 358
PkrI	GCNGC	6 cut(s)	10, 22, 406, 493, 496, 577
Psp124BI	GAGCTC	2 cut(s)	799, 906
Psp6I	CCWGG	4 cut(s)	239, 249, 340, 932
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	4 cut(s)	239, 249, 340, 932
PspN4I	GGNNCC	2 cut(s)	121, 585
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	37, 494
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	3 cut(s)	252, 589, 784
SacI	GAGCTC	2 cut(s)	799, 906
SaqAI	TTAA	4 cut(s)	159, 435, 729, 744
SatI	GCNGC	6 cut(s)	9, 21, 405, 492, 495, 576
Sau3AI	GATC	2 cut(s)	15, 119
ScrFI	CCNGG	5 cut(s)	124, 241, 251, 342, 934
SduI	GDGCHC	2 cut(s)	799, 906
SfaNI	GCATC	5 cut(s)	289, 391, 562, 776, 893
SmiMI	CAYNNNNRTG	3 cut(s)	252, 589, 784
SmlI	CTYRAG	2 cut(s)	158, 899
SmoI	CTYRAG	2 cut(s)	158, 899
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	5 cut(s)	285, 366, 410, 546, 912
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	2 cut(s)	799, 906
StyD4I	CCNGG	5 cut(s)	122, 239, 249, 340, 932
StyI	CCWWGG	3 cut(s)	623, 721, 751
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	424
TasI	AATT	5 cut(s)	285, 366, 410, 546, 912
TatI	WGTACW	1 cut(s)	895
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	4 cut(s)	159, 435, 729, 744
Tru9I	TTAA	4 cut(s)	159, 435, 729, 744
TscAI	CASTG	1 cut(s)	796
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	5 cut(s)	20, 404, 491, 494, 575
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	796
Vha464I	CTTAAG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	2 cut(s)	82, 157
XmnI	GAANNNNTTC	2 cut(s)	324, 358
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.