Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

68966708 .. 68968326

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGACTGCTATCAAGACATTGAGAGCAGAACCAAATGCCAATGACCAGTATCTACCTCCTTTTGTTATTGTTGATGACAGTGGAAAGCCTGTGGGCCCAATAGTTGATGGTGATGCTATTGTAACATTCAACTTCCGAGCAGATCGTATGGTCGTGGCTGCTGAGACATTTGAGCATGCAGATTTTGAAAAATTCGATAGAGTTCGATATGATGGTGAGCCGAAGCTTCCAACCCGTTACCTTGTAGAACCCCCAAAGATTGATATAACATCCGGGGAATATCTAACTTACAACGGTGTCCATACTTTTGCCTGCGGTGATATTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGTACGTGTTAACCTACCCAATGGGGACATGGTGGGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGATTTTATGTTGTTACAGCTGATCATGGTAATGCCGAGTATATGGTGAAGAGAAATAAGACCAGGCAACCTCTTCTTGACAAGAGTGGCAACACCCAAATCCTTACCTCCCGCACTCTTCAACCAGTTCCCGTTGCTATTGGAGGCCCCGGACTGGCACCTGGTGTTCGGTTCCGCAAGGATCTTCCAAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGTCGTCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

268

Amino Acids

28.96

Weight (kDa)

5.09

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	3 - 67	2e-12	BPG-independent PGAM N-terminus (iPGM_N)
Metalloenzyme	PF01676	106 - 252	1.8e-35	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	707
AciI	CCGC	4 cut(s)	315, 497, 625, 688
AclWI	GGATC	1 cut(s)	702
AcsI	RAATTY	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	667, 707
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	5 cut(s)	130, 188, 337, 635, 788
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	2 cut(s)	575, 673
AluBI	AGCT	3 cut(s)	226, 476, 533
AluI	AGCT	3 cut(s)	226, 476, 533
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	702
AoxI	GGCC	4 cut(s)	94, 441, 658, 756
ApaI	GGGCCC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	158, 464, 725
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	4 cut(s)	94, 95, 659, 757
AsuC2I	CCSGG	2 cut(s)	274, 663
AsuHPI	GGTGA	5 cut(s)	122, 227, 329, 443, 571
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	670
BanII	GRGCYC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	145, 451, 712
BccI	CCATC	2 cut(s)	101, 206
BciT130I	CCWGG	2 cut(s)	577, 675
BclI	TGATCA	3 cut(s)	469, 535, 735
BcnI	CCSGG	2 cut(s)	274, 663
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	802
BisI	GCNGC	3 cut(s)	159, 465, 726
BlsI	GCNGC	3 cut(s)	160, 466, 727
Bme1390I	CCNGG	4 cut(s)	274, 577, 663, 675
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmgT120I	GGNCC	4 cut(s)	94, 95, 659, 757
BmiI	GGNNCC	5 cut(s)	96, 661, 672, 686, 759
BmrFI	CCNGG	4 cut(s)	274, 577, 663, 675
BmsI	GCATC	2 cut(s)	103, 484
BpuMI	CCSGG	2 cut(s)	274, 663
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	273, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 707
Bse1I	ACTGG	4 cut(s)	46, 433, 638, 672
BseBI	CCWGG	2 cut(s)	577, 675
BseDI	CCNNGG	2 cut(s)	273, 661
BseGI	GGATG	2 cut(s)	269, 391
BseLI	CCNNNNNNNGG	2 cut(s)	667, 707
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	4 cut(s)	46, 433, 638, 672
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	145, 451, 712
BshFI	GGCC	4 cut(s)	96, 443, 660, 758
BshNI	GGYRCC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	273, 663
BslFI	GGGAC	2 cut(s)	425, 763
BslI	CCNNNNNNNGG	2 cut(s)	667, 707
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	425, 763
BsnI	GGCC	4 cut(s)	96, 443, 660, 758
Bsp120I	GGGCCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	5 cut(s)	142, 469, 535, 694, 735
BspACI	CCGC	4 cut(s)	315, 497, 625, 688
BspANI	GGCC	4 cut(s)	96, 443, 660, 758
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	5 cut(s)	96, 661, 672, 686, 759
BspPI	GGATC	1 cut(s)	702
BspT107I	GGYRCC	1 cut(s)	670
BsrI	ACTGG	4 cut(s)	46, 433, 638, 672
BssECI	CCNNGG	2 cut(s)	273, 661
BssMI	GATC	5 cut(s)	142, 469, 535, 694, 735
Bst2UI	CCWGG	2 cut(s)	577, 675
Bst4CI	ACNGT	2 cut(s)	80, 296
Bst6I	CTCTTC	3 cut(s)	557, 591, 636
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	177, 313, 457
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	269, 391
BstKTI	GATC	5 cut(s)	145, 472, 538, 697, 738
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	5 cut(s)	142, 469, 535, 694, 735
BstMWI	GCNNNNNNNGC	4 cut(s)	377, 461, 473, 722
BstNI	CCWGG	2 cut(s)	577, 675
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	272, 575, 661, 673
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	145, 451, 712
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	4 cut(s)	96, 443, 660, 758
BtsCI	GGATG	2 cut(s)	269, 391
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	3 cut(s)	177, 313, 457
Cfr13I	GGNCC	4 cut(s)	94, 95, 659, 757
CsiI	ACCWGGT	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	389
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	4 cut(s)	176, 415, 539, 746
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	5 cut(s)	144, 471, 537, 696, 737
DpnII	GATC	5 cut(s)	142, 469, 535, 694, 735
DraIII	CACNNNGTG	1 cut(s)	677
DriI	GACNNNNNGTC	1 cut(s)	772
Eam1104I	CTCTTC	3 cut(s)	557, 591, 636
Eam1105I	GACNNNNNGTC	1 cut(s)	772
EarI	CTCTTC	3 cut(s)	557, 591, 636
Eco24I	GRGCYC	1 cut(s)	98
EcoO109I	RGGNCCY	2 cut(s)	659, 757
EcoRII	CCWGG	2 cut(s)	575, 673
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	4 cut(s)	179, 418, 542, 749
FaqI	GGGAC	2 cut(s)	425, 763
FatI	CATG	4 cut(s)	175, 414, 538, 745
FauI	CCCGC	1 cut(s)	632
FbaI	TGATCA	3 cut(s)	469, 535, 735
Fnu4HI	GCNGC	3 cut(s)	159, 465, 726
FokI	GGATG	2 cut(s)	256, 398
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	159, 465, 726
FspBI	CTAG	1 cut(s)	802
GluI	GCNGC	3 cut(s)	159, 465, 726
HaeIII	GGCC	4 cut(s)	96, 443, 660, 758
HapII	CCGG	2 cut(s)	273, 663
Hin1II	CATG	4 cut(s)	179, 418, 542, 749
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	3 cut(s)	327, 487, 773
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	273, 663
HphI	GGTGA	5 cut(s)	122, 227, 329, 443, 571
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	4 cut(s)	13, 481, 491, 590
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	80, 296
HpyCH4IV	ACGT	2 cut(s)	339, 391
HpyCH4V	TGCA	4 cut(s)	179, 459, 728, 745
HpyF10VI	GCNNNNNNNGC	4 cut(s)	377, 461, 473, 722
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	339, 391
Hsp92II	CATG	4 cut(s)	179, 418, 542, 749
Ksp22I	TGATCA	3 cut(s)	469, 535, 735
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	142, 469, 535, 694, 735
Lsp1109I	GCAGC	3 cut(s)	145, 451, 712
LweI	GCATC	2 cut(s)	103, 484
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	1 cut(s)	802
MaeII	ACGT	2 cut(s)	339, 391
MaeIII	GTNAC	4 cut(s)	121, 236, 431, 526
MalI	GATC	5 cut(s)	144, 471, 537, 696, 737
MboI	GATC	5 cut(s)	142, 469, 535, 694, 735
MboII	GAAGA	4 cut(s)	574, 578, 623, 689
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	2 cut(s)	191, 447
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	7 cut(s)	66, 433, 594, 631, 650, 748, 791
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	429, 543
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	2 cut(s)	273, 663
MspR9I	CCNGG	4 cut(s)	274, 577, 663, 675
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	577, 675
MwoI	GCNNNNNNNGC	4 cut(s)	377, 461, 473, 722
NciI	CCSGG	2 cut(s)	274, 663
NdeII	GATC	5 cut(s)	142, 469, 535, 694, 735
NlaIII	CATG	4 cut(s)	179, 418, 542, 749
NlaIV	GGNNCC	5 cut(s)	96, 661, 672, 686, 759
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	327, 487
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	160, 466, 727
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
Ppu21I	YACGTR	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	575, 673
PspGI	CCWGG	2 cut(s)	575, 673
PspN4I	GGNNCC	5 cut(s)	96, 661, 672, 686, 759
PspOMI	GGGCCC	1 cut(s)	94
PspPI	GGNCC	4 cut(s)	94, 95, 659, 757
PsuI	RGATCY	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	2 cut(s)	429, 543
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	3 cut(s)	159, 465, 726
Sau3AI	GATC	5 cut(s)	142, 469, 535, 694, 735
Sau96I	GGNCC	4 cut(s)	94, 95, 659, 757
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	4 cut(s)	274, 577, 663, 675
SduI	GDGCHC	1 cut(s)	98
SexAI	ACCWGGT	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	103, 484
SmiMI	CAYNNNNRTG	2 cut(s)	429, 543
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	191, 447
SsiI	CCGC	4 cut(s)	315, 497, 625, 688
SspMI	CTAG	1 cut(s)	802
StyD4I	CCNGG	4 cut(s)	272, 575, 661, 673
TaaI	ACNGT	2 cut(s)	80, 296
TaiI	ACGT	2 cut(s)	342, 394
TaqI	TCGA	2 cut(s)	195, 205
TasI	AATT	2 cut(s)	191, 447
TfiI	GAWTC	2 cut(s)	327, 487
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	3 cut(s)	158, 464, 725
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	707
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XspI	CTAG	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.