Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

61815101 .. 61816132

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAACTGATCATGGTAATACCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCTCATTGCTATTGGAGGCCCTGGACTGGCACCTGGTGTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCGTCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

107

Amino Acids

11.33

Weight (kDa)

4.9

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	2 - 92	1.7e-17	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	2 cut(s)	17, 208
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	187, 227
AgsI	TTSAA	2 cut(s)	155, 308
AjnI	CCWGG	2 cut(s)	181, 193
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	178, 276
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	179, 277
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	183, 195
BclI	TGATCA	2 cut(s)	55, 255
BcnI	CCSGG	1 cut(s)	97
BfaI	CTAG	1 cut(s)	322
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	3 cut(s)	97, 183, 195
BmgT120I	GGNCC	2 cut(s)	179, 277
BmiI	GGNNCC	3 cut(s)	192, 206, 279
BmrFI	CCNGG	3 cut(s)	97, 183, 195
BmsI	GCATC	1 cut(s)	4
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	69, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 227
Bse1I	ACTGG	2 cut(s)	158, 192
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	183, 195
BseDI	CCNNGG	2 cut(s)	69, 181
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	187, 227
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	158, 192
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	2 cut(s)	180, 278
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	187, 227
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	180, 278
Bsp143I	GATC	3 cut(s)	55, 214, 255
BspACI	CCGC	2 cut(s)	17, 208
BspANI	GGCC	2 cut(s)	180, 278
BspLI	GGNNCC	3 cut(s)	192, 206, 279
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	158, 192
BssECI	CCNNGG	2 cut(s)	69, 181
BssMI	GATC	3 cut(s)	55, 214, 255
Bst2UI	CCWGG	2 cut(s)	183, 195
Bst6I	CTCTTC	3 cut(s)	77, 111, 156
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	3 cut(s)	58, 217, 258
BstMBI	GATC	3 cut(s)	55, 214, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	2 cut(s)	183, 195
BstSCI	CCNGG	3 cut(s)	95, 181, 193
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	180, 278
BtsCI	GGATG	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	179, 277
CsiI	ACCWGGT	1 cut(s)	193
CviAII	CATG	2 cut(s)	59, 266
CviJI	RGCY	3 cut(s)	180, 278, 295
CviKI_1	RGCY	3 cut(s)	180, 278, 295
DpnI	GATC	3 cut(s)	57, 216, 257
DpnII	GATC	3 cut(s)	55, 214, 255
DraIII	CACNNNGTG	1 cut(s)	197
Eam1104I	CTCTTC	3 cut(s)	77, 111, 156
EarI	CTCTTC	3 cut(s)	77, 111, 156
EcoO109I	RGGNCCY	2 cut(s)	179, 277
EcoRII	CCWGG	2 cut(s)	181, 193
FaeI	CATG	2 cut(s)	62, 269
FaiI	YATR	6 cut(s)	42, 60, 77, 254, 267, 291
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	58, 265
FbaI	TGATCA	2 cut(s)	55, 255
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	322
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	180, 278
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	2 cut(s)	62, 269
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	11, 110
HpyCH4V	TGCA	2 cut(s)	248, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	62, 269
Ksp22I	TGATCA	2 cut(s)	55, 255
Kzo9I	GATC	3 cut(s)	55, 214, 255
LpnPI	CCDG	8 cut(s)	109, 168, 171, 173, 180, 195, 207, 294
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	4
MabI	ACCWGGT	1 cut(s)	193
MaeI	CTAG	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	57, 216, 257
MboI	GATC	3 cut(s)	55, 214, 255
MboII	GAAGA	4 cut(s)	94, 98, 143, 209
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	6 cut(s)	64, 114, 151, 170, 268, 311
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	3 cut(s)	97, 183, 195
MvaI	CCWGG	2 cut(s)	183, 195
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	55, 214, 255
NlaIII	CATG	2 cut(s)	62, 269
NlaIV	GGNNCC	3 cut(s)	192, 206, 279
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	181, 193
PspGI	CCWGG	2 cut(s)	181, 193
PspN4I	GGNNCC	3 cut(s)	192, 206, 279
PspPI	GGNCC	2 cut(s)	179, 277
PsuI	RGATCY	1 cut(s)	214
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	3 cut(s)	55, 214, 255
Sau96I	GGNCC	2 cut(s)	179, 277
ScrFI	CCNGG	3 cut(s)	97, 183, 195
SetI	ASST	3 cut(s)	106, 143, 196
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	17, 208
SspMI	CTAG	1 cut(s)	322
StyD4I	CCNGG	3 cut(s)	95, 181, 193
TasI	AATT	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.