Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004018.1

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Forward (+)

9371 .. 10424

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004018.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgtacaaggagtaccgtgacaccactctgaatggggctgtggatcagatgtgcactgagatggctttaagaatgcccaagttctcggtacgtgttaacctacccaatggggacatggtggggcatactggtgacaatgaggccacaattgtagcttgcaaggctgctgatcaagctgtcaagatgattcttgatgtggtagagcaagtgggtggaatttatgttgttacagctgatcatggtaataccgaggatatggtgaagagaaataagaccgggcaacctcttcttgacaagagtggcaacatccaaatccttacctcccgcactcttcaaccagttcccgttgctattggaggccctggactggcacctggtgttcggttccgcaaggatcttccaagtggtggtcttgccaatgttgctgcaactatgatcaatctgcatggatttgaggcccttgctgactatgagccgtccctcattgaagttgttgataactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

167

Amino Acids

17.9

Weight (kDa)

5.12

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccB7I	CCANNNNNTGG	1 cut(s)	407
AciI	CCGC	2 cut(s)	325, 388
AclWI	GGATC	2 cut(s)	51, 402
AcsI	RAATTY	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	3 cut(s)	5, 14, 90
AfiI	CCNNNNNNNGG	2 cut(s)	367, 407
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	335, 488
AjnI	CCWGG	2 cut(s)	361, 373
AluBI	AGCT	3 cut(s)	155, 176, 233
AluI	AGCT	3 cut(s)	155, 176, 233
Alw21I	GWGCWC	1 cut(s)	56
Alw44I	GTGCAC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	51, 402
AoxI	GGCC	3 cut(s)	141, 358, 456
ApaLI	GTGCAC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	164, 425
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	359, 457
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	143, 271
BaeGI	GKGCMC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	151, 412
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	2 cut(s)	363, 375
BclI	TGATCA	3 cut(s)	169, 235, 435
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	502
BisI	GCNGC	2 cut(s)	165, 426
BlsI	GCNGC	2 cut(s)	166, 427
Bme1390I	CCNGG	3 cut(s)	277, 363, 375
BmgT120I	GGNCC	2 cut(s)	359, 457
BmiI	GGNNCC	2 cut(s)	372, 386
BmrFI	CCNGG	3 cut(s)	277, 363, 375
BpuMI	CCSGG	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	249, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 407
Bse1I	ACTGG	3 cut(s)	133, 338, 372
BseBI	CCWGG	2 cut(s)	363, 375
BseDI	CCNNGG	2 cut(s)	249, 361
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	367, 407
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	3 cut(s)	133, 338, 372
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	151, 412
BshFI	GGCC	3 cut(s)	143, 360, 458
BshNI	GGYRCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	125, 463
BslI	CCNNNNNNNGG	2 cut(s)	367, 407
BsmFI	GGGAC	2 cut(s)	125, 463
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	143, 360, 458
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	43, 169, 235, 394, 435
BspACI	CCGC	2 cut(s)	325, 388
BspANI	GGCC	3 cut(s)	143, 360, 458
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	372, 386
BspPI	GGATC	2 cut(s)	51, 402
BspT107I	GGYRCC	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	133, 338, 372
BssECI	CCNNGG	2 cut(s)	249, 361
BssMI	GATC	5 cut(s)	43, 169, 235, 394, 435
Bst2UI	CCWGG	2 cut(s)	363, 375
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	3 cut(s)	257, 291, 336
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	5 cut(s)	46, 172, 238, 397, 438
BstMBI	GATC	5 cut(s)	43, 169, 235, 394, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 173, 422
BstNI	CCWGG	2 cut(s)	363, 375
BstSCI	CCNGG	3 cut(s)	275, 361, 373
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	151, 412
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	143, 360, 458
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	359, 457
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	4, 13, 89
CviAII	CATG	3 cut(s)	115, 239, 446
CviQI	GTAC	3 cut(s)	4, 13, 89
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	5 cut(s)	45, 171, 237, 396, 437
DpnII	GATC	5 cut(s)	43, 169, 235, 394, 435
DraIII	CACNNNGTG	1 cut(s)	377
Eam1104I	CTCTTC	3 cut(s)	257, 291, 336
EarI	CTCTTC	3 cut(s)	257, 291, 336
EcoO109I	RGGNCCY	2 cut(s)	359, 457
EcoRII	CCWGG	2 cut(s)	361, 373
FaeI	CATG	3 cut(s)	118, 242, 449
FaiI	YATR	8 cut(s)	116, 126, 222, 240, 257, 434, 447, 471
FaqI	GGGAC	2 cut(s)	125, 463
FatI	CATG	3 cut(s)	114, 238, 445
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	3 cut(s)	169, 235, 435
Fnu4HI	GCNGC	2 cut(s)	165, 426
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	165, 426
FspBI	CTAG	1 cut(s)	502
GluI	GCNGC	2 cut(s)	165, 426
HaeIII	GGCC	3 cut(s)	143, 360, 458
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	3 cut(s)	118, 242, 449
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	187
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	143, 271
Hpy166II	GTNNAC	2 cut(s)	54, 97
Hpy188I	TCNGA	2 cut(s)	30, 48
Hpy188III	TCNNGA	3 cut(s)	181, 191, 290
Hpy8I	GTNNAC	2 cut(s)	54, 97
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	54, 159, 428, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 173, 422
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	118, 242, 449
Ksp22I	TGATCA	3 cut(s)	169, 235, 435
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	43, 169, 235, 394, 435
LpnPI	CCDG	8 cut(s)	114, 289, 348, 351, 353, 360, 375, 387
Lsp1109I	GCAGC	2 cut(s)	151, 412
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	1 cut(s)	502
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	3 cut(s)	17, 131, 226
MalI	GATC	5 cut(s)	45, 171, 237, 396, 437
MboI	GATC	5 cut(s)	43, 169, 235, 394, 435
MboII	GAAGA	4 cut(s)	274, 278, 323, 389
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	147, 216
MnlI	CCTC	7 cut(s)	133, 244, 294, 331, 350, 448, 491
MseI	TTAA	2 cut(s)	68, 96
MslI	CAYNNNNRTG	2 cut(s)	59, 129
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	277, 363, 375
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	2 cut(s)	363, 375
MwoI	GCNNNNNNNGC	3 cut(s)	161, 173, 422
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	5 cut(s)	43, 169, 235, 394, 435
NlaIII	CATG	3 cut(s)	118, 242, 449
NlaIV	GGNNCC	2 cut(s)	372, 386
NmuCI	GTSAC	2 cut(s)	17, 131
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	166, 427
Ppu21I	YACGTR	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	361, 373
PspGI	CCWGG	2 cut(s)	361, 373
PspN4I	GGNNCC	2 cut(s)	372, 386
PspPI	GGNCC	2 cut(s)	359, 457
PsuI	RGATCY	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	3 cut(s)	5, 14, 90
RsaNI	GTAC	3 cut(s)	4, 13, 89
RseI	CAYNNNNRTG	2 cut(s)	59, 129
SaqAI	TTAA	2 cut(s)	68, 96
SatI	GCNGC	2 cut(s)	165, 426
Sau3AI	GATC	5 cut(s)	43, 169, 235, 394, 435
Sau96I	GGNCC	2 cut(s)	359, 457
ScrFI	CCNGG	3 cut(s)	277, 363, 375
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	8 cut(s)	94, 102, 157, 178, 235, 286, 323, 376
SexAI	ACCWGGT	1 cut(s)	373
SmiMI	CAYNNNNRTG	2 cut(s)	59, 129
Sse9I	AATT	2 cut(s)	147, 216
SsiI	CCGC	2 cut(s)	325, 388
SspMI	CTAG	1 cut(s)	502
StyD4I	CCNGG	3 cut(s)	275, 361, 373
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	94
TasI	AATT	2 cut(s)	147, 216
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	68, 96
Tru9I	TTAA	2 cut(s)	68, 96
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	17, 131
TseI	GCWGC	2 cut(s)	164, 425
Tsp45I	GTSAC	2 cut(s)	17, 131
TspRI	CASTG	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.