Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007705.1

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

42036 .. 45149

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007705.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggaggtcacgccaaagaagtcgtcgctcagccatagaatccgccgatctgctctccagccaaagccaaagccgccaccagaccagtcttctttggcgcgcgggagaataattggttttatagagatgaatcggttattgggtctggtattgaagcagaggaatgactggtcagttgtaaaacgaggatgggatgcccaagttctcggtgaagccccctataaatttaagaatgctgttgaagctatcaagacattgagagcagaaccaaatgccaatgaccagtatctacctccttttgttattgttgatgacagtggaaagcctgtgggcccaatagttgatggtgatgctgttttaacattcaacttccgagcagatcgtatggtcatggctgctgaggtatttgagtatgcagattttgataaattcgatagagttcaagttcctaaaatccgttacgctggtatgcttcagtatgatggtgagctgaagcttccaacccgttaccttgtagaacccccagagattgatagaacatccggggaatatctaacttacaacggaatatccgaatatgtggaaattccaagtgatagtggaatctcattcaacgtccagccaaagatgaaggcattggagattgctgaaacggcaagggatgctattctgaccaagaagtttgaacaggtacgtgttaacttacccaatggggccatggtggggcatactggtgacattgaggccacaattgttgcttgcaaggctgctgatcaagctgtcaagatgattcttgatgcggtagagcaagtgggtggaatttatgttgttacagctgatcagggtaatgccgaggatatggttcccgttgctattggaggccccggactggcacttggtgttcggttccgcaaggatcttccaagtggtggtcttgccaatgttgctgcaactatgatcaatctgcatggatttgaggcccctgctgactatgagccgtccctcattgaagttattgataactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

341

Amino Acids

37.4

Weight (kDa)

5.25

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	929
AccII	CGCG	2 cut(s)	100, 102
AciI	CCGC	5 cut(s)	43, 74, 102, 800, 910
AclWI	GGATC	1 cut(s)	924
AcsI	RAATTY	4 cut(s)	224, 428, 585, 819
AcuI	CTGAAG	2 cut(s)	458, 512
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	3 cut(s)	723, 889, 929
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	7 cut(s)	154, 242, 367, 443, 613, 686, 1010
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	5 cut(s)	245, 490, 496, 779, 836
AluI	AGCT	5 cut(s)	245, 490, 496, 779, 836
AlwI	GGATC	1 cut(s)	924
AoxI	GGCC	5 cut(s)	331, 714, 744, 880, 978
ApaI	GGGCCC	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	395, 767, 947
ApoI	RAATTY	4 cut(s)	224, 428, 585, 819
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	2 cut(s)	100, 102
AspS9I	GGNCC	5 cut(s)	331, 332, 714, 881, 979
AsuC2I	CCSGG	2 cut(s)	544, 885
AsuHPI	GGTGA	4 cut(s)	221, 359, 497, 746
BaeGI	GKGCMC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	382, 754, 934
BccI	CCATC	3 cut(s)	183, 338, 476
BceAI	ACGGC	2 cut(s)	669, 982
BclI	TGATCA	3 cut(s)	772, 838, 957
BcnI	CCSGG	2 cut(s)	544, 885
BfaI	CTAG	1 cut(s)	1024
BisI	GCNGC	4 cut(s)	74, 396, 768, 948
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	4 cut(s)	75, 397, 769, 949
Bme1390I	CCNGG	2 cut(s)	544, 885
BmgT120I	GGNCC	5 cut(s)	331, 332, 714, 881, 979
BmiI	GGNNCC	6 cut(s)	333, 715, 864, 883, 908, 981
BmrFI	CCNGG	2 cut(s)	544, 885
BmsI	GCATC	4 cut(s)	184, 340, 652, 787
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	544, 885
BsaAI	YACGTR	1 cut(s)	695
BsaJI	CCNNGG	4 cut(s)	543, 717, 852, 883
Bsc4I	CCNNNNNNNGG	3 cut(s)	723, 889, 929
Bse1I	ACTGG	5 cut(s)	85, 173, 283, 736, 894
BseDI	CCNNGG	4 cut(s)	543, 717, 852, 883
BseGI	GGATG	4 cut(s)	194, 199, 539, 667
BseLI	CCNNNNNNNGG	3 cut(s)	723, 889, 929
BseMII	CTCAG	2 cut(s)	43, 390
BseNI	ACTGG	5 cut(s)	85, 173, 283, 736, 894
BsePI	GCGCGC	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	382, 754, 934
Bsh1236I	CGCG	2 cut(s)	100, 102
BshFI	GGCC	5 cut(s)	333, 716, 746, 882, 980
BsiSI	CCGG	2 cut(s)	543, 885
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	3 cut(s)	723, 889, 929
BsmFI	GGGAC	1 cut(s)	985
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	5 cut(s)	333, 716, 746, 882, 980
Bsp120I	GGGCCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
Bsp1720I	GCTNAGC	1 cut(s)	29
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	5 cut(s)	43, 74, 102, 800, 910
BspANI	GGCC	5 cut(s)	333, 716, 746, 882, 980
BspCNI	CTCAG	2 cut(s)	42, 391
BspFNI	CGCG	2 cut(s)	100, 102
BspLI	GGNNCC	6 cut(s)	333, 715, 864, 883, 908, 981
BspPI	GGATC	1 cut(s)	924
BsrI	ACTGG	5 cut(s)	85, 173, 283, 736, 894
BssECI	CCNNGG	4 cut(s)	543, 717, 852, 883
BssHII	GCGCGC	1 cut(s)	98
BssMI	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
BssT1I	CCWWGG	1 cut(s)	717
Bst4CI	ACNGT	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	100, 760
BstDEI	CTNAG	2 cut(s)	29, 399
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	4 cut(s)	194, 199, 539, 667
BstFNI	CGCG	2 cut(s)	100, 102
BstHHI	GCGC	2 cut(s)	100, 102
BstKTI	GATC	6 cut(s)	50, 382, 775, 841, 919, 960
BstMBI	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
BstMWI	GCNNNNNNNGC	7 cut(s)	73, 242, 653, 662, 764, 776, 944
BstSCI	CCNGG	2 cut(s)	542, 883
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	2 cut(s)	100, 102
BstV1I	GCAGC	3 cut(s)	382, 754, 934
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BsuRI	GGCC	5 cut(s)	333, 716, 746, 882, 980
BtgI	CCRYGG	1 cut(s)	717
BtsCI	GGATG	4 cut(s)	194, 199, 539, 667
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	100, 760
CfoI	GCGC	2 cut(s)	100, 102
Cfr13I	GGNCC	5 cut(s)	331, 332, 714, 881, 979
Csp6I	GTAC	1 cut(s)	692
CspCI	CAANNNNNGTGG	2 cut(s)	736, 771
CviAII	CATG	3 cut(s)	391, 718, 968
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	2 cut(s)	29, 399
DpnI	GATC	6 cut(s)	49, 381, 774, 840, 918, 959
DpnII	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
DraIII	CACNNNGTG	1 cut(s)	899
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	1 cut(s)	335
Eco57I	CTGAAG	2 cut(s)	458, 512
EcoO109I	RGGNCCY	2 cut(s)	881, 979
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	3 cut(s)	394, 721, 971
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	3 cut(s)	390, 717, 967
FauI	CCCGC	1 cut(s)	95
FbaI	TGATCA	3 cut(s)	772, 838, 957
Fnu4HI	GCNGC	4 cut(s)	74, 396, 768, 948
FokI	GGATG	4 cut(s)	201, 206, 526, 674
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	74, 396, 768, 948
FspBI	CTAG	1 cut(s)	1024
GlaI	GCGC	2 cut(s)	99, 101
GluI	GCNGC	4 cut(s)	74, 396, 768, 948
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	5 cut(s)	333, 716, 746, 882, 980
HapII	CCGG	2 cut(s)	543, 885
HhaI	GCGC	2 cut(s)	100, 102
Hin1II	CATG	3 cut(s)	394, 721, 971
Hin6I	GCGC	2 cut(s)	98, 100
HinP1I	GCGC	2 cut(s)	98, 100
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	4 cut(s)	39, 130, 603, 790
HpaI	GTTAAC	1 cut(s)	700
HpaII	CCGG	2 cut(s)	543, 885
HphI	GGTGA	4 cut(s)	221, 359, 497, 746
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	3 cut(s)	374, 574, 672
Hpy188III	TCNNGA	3 cut(s)	250, 784, 794
Hpy8I	GTNNAC	1 cut(s)	700
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	625
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	615, 694
HpyCH4V	TGCA	4 cut(s)	416, 762, 950, 967
HpyF10VI	GCNNNNNNNGC	7 cut(s)	73, 242, 653, 662, 764, 776, 944
HpyF3I	CTNAG	2 cut(s)	29, 399
HpySE526I	ACGT	2 cut(s)	615, 694
Hsp92II	CATG	3 cut(s)	394, 721, 971
HspAI	GCGC	2 cut(s)	98, 100
Ksp22I	TGATCA	3 cut(s)	772, 838, 957
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
Lsp1109I	GCAGC	3 cut(s)	382, 754, 934
LweI	GCATC	4 cut(s)	184, 340, 652, 787
MaeI	CTAG	1 cut(s)	1024
MaeII	ACGT	2 cut(s)	615, 694
MaeIII	GTNAC	5 cut(s)	7, 458, 506, 734, 829
MalI	GATC	6 cut(s)	49, 381, 774, 840, 918, 959
MboI	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
MboII	GAAGA	2 cut(s)	81, 911
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	6 cut(s)	111, 224, 428, 585, 750, 819
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	9 cut(s)	153, 179, 303, 394, 736, 847, 872, 970, 1013
MseI	TTAA	3 cut(s)	228, 359, 699
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	2 cut(s)	543, 885
MspR9I	CCNGG	2 cut(s)	544, 885
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	2 cut(s)	100, 102
MwoI	GCNNNNNNNGC	7 cut(s)	73, 242, 653, 662, 764, 776, 944
NciI	CCSGG	2 cut(s)	544, 885
NcoI	CCATGG	1 cut(s)	717
NdeII	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
NlaIII	CATG	3 cut(s)	394, 721, 971
NlaIV	GGNNCC	6 cut(s)	333, 715, 864, 883, 908, 981
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	2 cut(s)	7, 734
PauI	GCGCGC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	4 cut(s)	39, 130, 603, 790
PflMI	CCANNNNNTGG	1 cut(s)	929
PkrI	GCNGC	4 cut(s)	75, 397, 769, 949
Ppu21I	YACGTR	1 cut(s)	695
PspN4I	GGNNCC	6 cut(s)	333, 715, 864, 883, 908, 981
PspOMI	GGGCCC	1 cut(s)	331
PspPI	GGNCC	5 cut(s)	331, 332, 714, 881, 979
PsuI	RGATCY	1 cut(s)	916
PteI	GCGCGC	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	3 cut(s)	228, 359, 699
SatI	GCNGC	4 cut(s)	74, 396, 768, 948
Sau3AI	GATC	6 cut(s)	47, 379, 772, 838, 916, 957
Sau96I	GGNCC	5 cut(s)	331, 332, 714, 881, 979
ScrFI	CCNGG	2 cut(s)	544, 885
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	4 cut(s)	184, 340, 652, 787
SmiMI	CAYNNNNRTG	1 cut(s)	732
Sse9I	AATT	6 cut(s)	111, 224, 428, 585, 750, 819
SsiI	CCGC	5 cut(s)	43, 74, 102, 800, 910
SspMI	CTAG	1 cut(s)	1024
StyD4I	CCNGG	2 cut(s)	542, 883
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	2 cut(s)	618, 697
TaqI	TCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	111, 224, 428, 585, 750, 819
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	4 cut(s)	39, 130, 603, 790
Tru1I	TTAA	3 cut(s)	228, 359, 699
Tru9I	TTAA	3 cut(s)	228, 359, 699
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	2 cut(s)	7, 734
TseI	GCWGC	3 cut(s)	395, 767, 947
Tsp45I	GTSAC	2 cut(s)	7, 734
TspDTI	ATGAA	2 cut(s)	143, 644
TspGWI	ACGGA	2 cut(s)	446, 579
TspRI	CASTG	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	929
XapI	RAATTY	4 cut(s)	224, 428, 585, 819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XspI	CTAG	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.