Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

61211461 .. 61212551

Gene Structure 1091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG431600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGCTGCTGATCAAGCTGTCAAGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATACCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCTATTGGAGGCCCTGGACTAGCACCTGGTGTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACCATAGCCGTCCCTCATTGAAGTTGTTGATAACTAGGAAATACAAGGCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

162

Amino Acids

17.48

Weight (kDa)

8.83

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	2 - 43	3.7e-06	Metalloenzyme superfamily
Metalloenzyme	PF01676	38 - 141	7.9e-24	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	164, 355
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	18, 183
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	46, 119, 302, 454
AjnI	CCWGG	2 cut(s)	328, 340
AluBI	AGCT	2 cut(s)	143, 200
AluI	AGCT	2 cut(s)	143, 200
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	325, 423
ApeKI	GCWGC	2 cut(s)	131, 392
ApoI	RAATTY	2 cut(s)	18, 183
AspS9I	GGNCC	2 cut(s)	326, 424
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	118, 379
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	2 cut(s)	330, 342
BclI	TGATCA	3 cut(s)	136, 202, 402
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	2 cut(s)	335, 468
BisI	GCNGC	2 cut(s)	132, 393
BlsI	GCNGC	2 cut(s)	133, 394
Bme1390I	CCNGG	3 cut(s)	244, 330, 342
BmgT120I	GGNCC	2 cut(s)	326, 424
BmiI	GGNNCC	2 cut(s)	353, 426
BmrFI	CCNGG	3 cut(s)	244, 330, 342
BmsI	GCATC	2 cut(s)	85, 151
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	216, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	330, 342
BseDI	CCNNGG	2 cut(s)	216, 328
BseGI	GGATG	2 cut(s)	100, 273
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	118, 379
BshFI	GGCC	2 cut(s)	327, 425
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	327, 425
Bsp143I	GATC	4 cut(s)	136, 202, 361, 402
BspACI	CCGC	2 cut(s)	164, 355
BspANI	GGCC	2 cut(s)	327, 425
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	353, 426
BspPI	GGATC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	216, 328
BssMI	GATC	4 cut(s)	136, 202, 361, 402
Bst2UI	CCWGG	2 cut(s)	330, 342
Bst6I	CTCTTC	3 cut(s)	224, 258, 303
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	100, 273
BstKTI	GATC	4 cut(s)	139, 205, 364, 405
BstMBI	GATC	4 cut(s)	136, 202, 361, 402
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 140, 389
BstNI	CCWGG	2 cut(s)	330, 342
BstSCI	CCNGG	3 cut(s)	242, 328, 340
BstV1I	GCAGC	2 cut(s)	118, 379
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	327, 425
BtsCI	GGATG	2 cut(s)	100, 273
Cfr13I	GGNCC	2 cut(s)	326, 424
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	206, 413
CviJI	RGCY	6 cut(s)	55, 143, 200, 327, 425, 441
CviKI_1	RGCY	6 cut(s)	55, 143, 200, 327, 425, 441
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	4 cut(s)	138, 204, 363, 404
DpnII	GATC	4 cut(s)	136, 202, 361, 402
DraIII	CACNNNGTG	1 cut(s)	344
Eam1104I	CTCTTC	3 cut(s)	224, 258, 303
EarI	CTCTTC	3 cut(s)	224, 258, 303
EcoO109I	RGGNCCY	2 cut(s)	326, 424
EcoRII	CCWGG	2 cut(s)	328, 340
FaeI	CATG	2 cut(s)	209, 416
FaiI	YATR	8 cut(s)	12, 189, 207, 224, 401, 414, 438, 487
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	2 cut(s)	205, 412
FbaI	TGATCA	3 cut(s)	136, 202, 402
Fnu4HI	GCNGC	2 cut(s)	132, 393
FokI	GGATG	2 cut(s)	107, 260
Fsp4HI	GCNGC	2 cut(s)	132, 393
FspBI	CTAG	2 cut(s)	335, 468
GluI	GCNGC	2 cut(s)	132, 393
HaeIII	GGCC	2 cut(s)	327, 425
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	2 cut(s)	209, 416
HinfI	GANTC	2 cut(s)	36, 154
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	105, 369
Hpy188III	TCNNGA	3 cut(s)	148, 158, 257
HpyAV	CCTTC	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	48, 127
HpyCH4V	TGCA	2 cut(s)	395, 412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 140, 389
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	2 cut(s)	48, 127
Hsp92II	CATG	2 cut(s)	209, 416
Ksp22I	TGATCA	3 cut(s)	136, 202, 402
Kzo9I	GATC	4 cut(s)	136, 202, 361, 402
LpnPI	CCDG	9 cut(s)	65, 107, 256, 315, 318, 327, 342, 354, 441
Lsp1109I	GCAGC	2 cut(s)	118, 379
LweI	GCATC	2 cut(s)	85, 151
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	2 cut(s)	335, 468
MaeII	ACGT	2 cut(s)	48, 127
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	4 cut(s)	138, 204, 363, 404
MboI	GATC	4 cut(s)	136, 202, 361, 402
MboII	GAAGA	4 cut(s)	241, 245, 290, 356
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	2 cut(s)	18, 183
MnlI	CCTC	6 cut(s)	211, 261, 298, 317, 415, 457
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	3 cut(s)	244, 330, 342
MvaI	CCWGG	2 cut(s)	330, 342
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 140, 389
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	4 cut(s)	136, 202, 361, 402
NlaIII	CATG	2 cut(s)	209, 416
NlaIV	GGNNCC	2 cut(s)	353, 426
PfeI	GAWTC	2 cut(s)	36, 154
PkrI	GCNGC	2 cut(s)	133, 394
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	328, 340
PspGI	CCWGG	2 cut(s)	328, 340
PspN4I	GGNNCC	2 cut(s)	353, 426
PspPI	GGNCC	2 cut(s)	326, 424
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	132, 393
Sau3AI	GATC	4 cut(s)	136, 202, 361, 402
Sau96I	GGNCC	2 cut(s)	326, 424
ScrFI	CCNGG	3 cut(s)	244, 330, 342
SetI	ASST	8 cut(s)	51, 126, 130, 145, 202, 253, 290, 343
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	85, 151
Sse9I	AATT	2 cut(s)	18, 183
SsiI	CCGC	2 cut(s)	164, 355
SspMI	CTAG	2 cut(s)	335, 468
StyD4I	CCNGG	3 cut(s)	242, 328, 340
TaiI	ACGT	2 cut(s)	51, 130
TasI	AATT	2 cut(s)	18, 183
TfiI	GAWTC	2 cut(s)	36, 154
TseI	GCWGC	2 cut(s)	131, 392
TspDTI	ATGAA	1 cut(s)	77
XapI	RAATTY	2 cut(s)	18, 183
XspI	CTAG	2 cut(s)	335, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.