AT1G09780

Phosphoglycerate mutase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
3165370 .. 3167924
2555 bp
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UTR
Exon/CDS
Intron
AT1G09780.1

Sequence Viewer

Length: 1674 bp
ATGGCTACCTCCTCCGCTTGGAAGCTCGATGACCACCCCAAGCTCCCCAAGGGTAAGACCATCGCCGTAATCGTCTTAGATGGTTGGGGTGAATCTGCCCCTGATCAGTACAACTGTATCCACAACGCTCCAACTCCAGCCATGGATTCTCTTAAACATGGAGCTCCTGATACTTGGACTTTGATCAAAGCTCACGGTACTGCTGTAGGACTTCCTAGTGAAGATGATATGGGAAACAGTGAGGTTGGTCATAATGCTCTTGGTGCTGGTCGTATCTTTGCTCAAGGTGCTAAGCTTTGTGACCAAGCTCTTGCTTCTGGCAAAATCTTTGAAGGTGAAGGTTTTAAATACGTTTCTGAATCTTTCGAGACGAATACTTTGCATCTTGTTGGACTTCTCAGTGACGGTGGAGTTCACTCTCGTCTCGATCAACTACAGTTGTTGATTAAAGGATCTGCTGAACGTGGTGCTAAGAGAATCAGAGTCCATATTCTTACTGATGGTCGTGATGTTTTGGATGGTTCTAGTGTTGGATTTGTGGAAACCCTTGAAGCCGACCTCGTTGCATTACGTGAGAATGGTGTGGATGCTCAGATTGCATCTGGTGGAGGACGTATGTATGTGACTTTGGACCGATATGAGAATGATTGGGAAGTTGTTAAAAGAGGTTGGGATGCTCAAGTTCTTGGAGAAGCTCCTCACAAATTCAAAAACGCTGTTGAAGCTGTGAAGACTTTGAGGAAAGAGCCTGGTGCTAATGACCAGTATTTGCCCCCGTTTGTGATTGTTGATGAATCAGGGAAAGCAGTTGGTCCGATTGTGGACGGTGATGCTGTTGTTACCTTCAACTTCAGGGCTGATCGTATGGTTATGCATGCTAAGGCACTTGAGTACGAAGATTTTGACAAATTTGACCGTGTGAGGTACCCAAAGATTCGTTATGCTGGTATGCTTCAGTATGATGGAGAGCTTAAGCTACCAAGCCGTTACCTTGTTTCTCCCCCGGAGATTGATAGAACATCTGGTGAATATTTGACTCACAATGGCGTCAGTACTTTTGCTTGCAGTGAGACCGTCAAGTTTGGGCATGTCACCTTCTTCTGGAATGGAAATCGATCTGGATATTTCAACGAGAAATTGGAGGAGTATGTTGAAATCCCAAGTGACAGTGGAATATCATTCAATGTCCAGCCAAAGATGAAAGCTCTGGAAATTGGTGAGAAGGCAAGGGATGCAATCCTTAGTGGCAAGTTTGATCAGGTGCGAGTTAACATTCCAAATGGAGATATGGTGGGTCATACAGGTGATATTGAAGCCACGGTTGTTGCATGCGAGGCTGCTGATCTTGCTGTGAAGATGATTTTTGATGCAATCGAACAAGTGAAAGGAATTTATGTTGTGACTGCTGATCACGGAAACGCAGAGGACATGGTGAAGAGGGATAAATCTGGCAAGCCTGCTTTGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCAGTGCCAATTGCTATTGGAGGTCCTGGTTTGGCTCAAGGAGTGAGATTCCGTAAAGATCTGGAAACACCGGGGCTTGCAAATGTAGCTGCAACAGTGATGAACCTCCATGGATTTGTGGCTCCCTCTGACTATGAGCCCACCCTGATTGAAGTAGTGGAGTAG

Protein Analysis

557

Amino Acids

60.58

Weight (kDa)

5.32

Isoelectric Point (pI)

29.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metalloenzyme PF01676 19 - 542 4.8e-87 Metalloenzyme superfamily
iPGM_N PF06415 101 - 321 2.1e-56 BPG-independent PGAM N-terminus (iPGM_N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 924
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 460
AcsI RAATTY 3 cut(s) 704, 908, 1389
AcuI CTGAAG 3 cut(s) 835, 938, 1466
AcyI GRCGYC 1 cut(s) 1047
AfaI GTAC 5 cut(s) 110, 199, 893, 926, 1054
AfiI CCNNNNNNNGG 2 cut(s) 18, 1101
AflII CTTAAG 1 cut(s) 971
AjnI CCWGG 2 cut(s) 748, 1534
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 3 cut(s) 362, 428, 1064
AlwI GGATC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 1337, 1598
ApoI RAATTY 3 cut(s) 704, 908, 1389
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
Asp718I GGTACC 1 cut(s) 924
AspS9I GGNCC 3 cut(s) 631, 812, 1532
AsuC2I CCSGG 2 cut(s) 1004, 1581
AsuHPI GGTGA 8 cut(s) 101, 347, 839, 1037, 1084, 1229, 1316, 1444
AvaII GGWCC 3 cut(s) 631, 812, 1532
BaeI ACNNNNGTAYC 4 cut(s) 100, 133, 189, 222
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 2 cut(s) 166, 1650
BbsI GAAGAC 1 cut(s) 737
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 1324, 1585
BccI CCATC 5 cut(s) 68, 74, 494, 512, 956
BceAI ACGGC 2 cut(s) 50, 969
BcgI CGANNNNNNTGC 4 cut(s) 361, 395, 545, 579
BciT130I CCWGG 2 cut(s) 750, 1536
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 4 cut(s) 103, 183, 1255, 1408
BcnI CCSGG 2 cut(s) 1004, 1581
BcoDI GTCTC 3 cut(s) 362, 428, 1064
BfaI CTAG 2 cut(s) 216, 525
BfmI CTRYAG 2 cut(s) 204, 434
BfrI CTTAAG 1 cut(s) 971
BfuI GTATCC 1 cut(s) 128
BglII AGATCT 1 cut(s) 1567
BisI GCNGC 2 cut(s) 1338, 1599
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 1339, 1600
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 4 cut(s) 750, 1004, 1536, 1581
Bme18I GGWCC 3 cut(s) 631, 812, 1532
BmgT120I GGNCC 3 cut(s) 631, 812, 1532
BmiI GGNNCC 2 cut(s) 926, 1632
BmrFI CCNGG 4 cut(s) 750, 1004, 1536, 1581
BmsI GCATC 7 cut(s) 391, 577, 608, 664, 820, 1222, 1357
BpiI GAAGAC 1 cut(s) 737
BpmI CTGGAG 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 5 cut(s) 267, 663, 908, 1490, 1530
BpuMI CCSGG 2 cut(s) 1004, 1581
Bsa29I ATCGAT 1 cut(s) 1114
BsaAI YACGTR 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 6 cut(s) 48, 141, 1002, 1317, 1580, 1618
BsaXI ACNNNNNCTCC 2 cut(s) 1275, 1305
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 1101
Bse1I ACTGG 2 cut(s) 763, 1511
BseBI CCWGG 2 cut(s) 750, 1536
BseCI ATCGAT 1 cut(s) 1114
BseDI CCNNGG 6 cut(s) 48, 141, 1002, 1317, 1580, 1618
BseGI GGATG 4 cut(s) 523, 592, 679, 1237
BseLI CCNNNNNNNGG 2 cut(s) 18, 1101
BseMII CTCAG 2 cut(s) 412, 605
BseNI ACTGG 2 cut(s) 763, 1511
BseRI GAGGAG 2 cut(s) 687, 1157
BseXI GCAGC 2 cut(s) 1324, 1585
BshNI GGYRCC 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 1114
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 2 cut(s) 1004, 1580
BslI CCNNNNNNNGG 2 cut(s) 18, 1101
BsmAI GTCTC 3 cut(s) 362, 428, 1064
BsmBI CGTCTC 2 cut(s) 362, 428
Bso31I GGTCTC 1 cut(s) 1064
Bsp1286I GDGCHC 2 cut(s) 166, 1650
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp19I CCATGG 2 cut(s) 141, 1618
BspACI CCGC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 411, 604
BspDI ATCGAT 1 cut(s) 1114
BspLI GGNNCC 2 cut(s) 926, 1632
BspPI GGATC 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 924
BspTI CTTAAG 1 cut(s) 971
BspTNI GGTCTC 1 cut(s) 1064
BsrI ACTGG 2 cut(s) 763, 1511
BssECI CCNNGG 6 cut(s) 48, 141, 1002, 1317, 1580, 1618
BssNI GRCGYC 1 cut(s) 1047
BssT1I CCWWGG 3 cut(s) 48, 141, 1618
Bst2UI CCWGG 2 cut(s) 750, 1536
Bst6I CTCTTC 1 cut(s) 1430
BstACI GRCGYC 1 cut(s) 1047
BstAFI CTTAAG 1 cut(s) 971
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 6 cut(s) 876, 1063, 1330, 1454, 1458, 1587
BstDEI CTNAG 7 cut(s) 76, 291, 398, 471, 591, 879, 1241
BstDSI CCRYGG 3 cut(s) 141, 1317, 1618
BstF5I GGATG 4 cut(s) 523, 592, 679, 1237
BstMAI GTCTC 3 cut(s) 362, 428, 1064
BstMWI GCNNNNNNNGC 8 cut(s) 263, 287, 596, 722, 1232, 1334, 1346, 1595
BstNI CCWGG 2 cut(s) 750, 1536
BstNSI RCATGY 3 cut(s) 878, 1091, 1332
BstSCI CCNGG 4 cut(s) 748, 1002, 1534, 1579
BstSFI CTRYAG 2 cut(s) 204, 434
BstV1I GCAGC 2 cut(s) 1324, 1585
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 2 cut(s) 452, 1567
BstYI RGATCY 2 cut(s) 452, 1567
Bsu15I ATCGAT 1 cut(s) 1114
BsuI GTATCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 1114
BtgI CCRYGG 3 cut(s) 141, 1317, 1618
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 4 cut(s) 523, 592, 679, 1237
BtsI GCAGTG 1 cut(s) 1072
BtsIMutI CAGTG 6 cut(s) 244, 406, 1072, 1174, 1518, 1611
Cac8I GCNNGC 6 cut(s) 876, 1063, 1330, 1454, 1458, 1587
Cfr13I GGNCC 3 cut(s) 631, 812, 1532
ClaI ATCGAT 1 cut(s) 1114
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 5 cut(s) 109, 198, 892, 925, 1053
CspCI CAANNNNNGTGG 4 cut(s) 1306, 1341, 1639, 1674
CviAII CATG 7 cut(s) 142, 158, 875, 1088, 1329, 1429, 1619
CviQI GTAC 5 cut(s) 109, 198, 892, 925, 1053
DdeI CTNAG 7 cut(s) 76, 291, 398, 471, 591, 879, 1241
DraI TTTAAA 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 1430
EarI CTCTTC 1 cut(s) 1430
Ecl136II GAGCTC 1 cut(s) 164
Eco130I CCWWGG 3 cut(s) 48, 141, 1618
Eco24I GRGCYC 2 cut(s) 166, 1650
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 3 cut(s) 631, 812, 1532
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 3 cut(s) 835, 938, 1466
EcoICRI GAGCTC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 1532
EcoRII CCWGG 2 cut(s) 748, 1534
EcoT14I CCWWGG 3 cut(s) 48, 141, 1618
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 2 cut(s) 166, 1650
ErhI CCWWGG 3 cut(s) 48, 141, 1618
Esp3I CGTCTC 2 cut(s) 362, 428
FaeI CATG 7 cut(s) 145, 161, 878, 1091, 1332, 1432, 1622
FalI AAGNNNNNCTT 2 cut(s) 1464, 1496
FatI CATG 7 cut(s) 141, 157, 874, 1087, 1328, 1428, 1618
FbaI TGATCA 4 cut(s) 103, 183, 1255, 1408
Fnu4HI GCNGC 2 cut(s) 1338, 1599
FokI GGATG 4 cut(s) 530, 599, 686, 1244
FriOI GRGCYC 2 cut(s) 166, 1650
Fsp4HI GCNGC 2 cut(s) 1338, 1599
FspBI CTAG 2 cut(s) 216, 525
GluI GCNGC 2 cut(s) 1338, 1599
GsuI CTGGAG 1 cut(s) 120
HapII CCGG 2 cut(s) 1004, 1580
HgaI GACGC 1 cut(s) 1036
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 7 cut(s) 145, 161, 878, 1091, 1332, 1432, 1622
HincII GTYRAC 1 cut(s) 1270
HindII GTYRAC 1 cut(s) 1270
HindIII AAGCTT 2 cut(s) 293, 1478
HpaI GTTAAC 1 cut(s) 1270
HpaII CCGG 2 cut(s) 1004, 1580
HphI GGTGA 8 cut(s) 101, 347, 839, 1037, 1084, 1229, 1316, 1444
Hpy166II GTNNAC 3 cut(s) 415, 823, 1270
Hpy188I TCNGA 6 cut(s) 358, 482, 594, 816, 1485, 1639
Hpy188III TCNNGA 8 cut(s) 167, 367, 425, 506, 1102, 1119, 1208, 1571
Hpy8I GTNNAC 3 cut(s) 415, 823, 1270
HpyAV CCTTC 6 cut(s) 326, 332, 853, 1105, 1216, 1466
HpyCH4IV ACGT 4 cut(s) 351, 463, 571, 613
HpyF10VI GCNNNNNNNGC 8 cut(s) 263, 287, 596, 722, 1232, 1334, 1346, 1595
HpyF3I CTNAG 7 cut(s) 76, 291, 398, 471, 591, 879, 1241
HpySE526I ACGT 4 cut(s) 351, 463, 571, 613
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 7 cut(s) 145, 161, 878, 1091, 1332, 1432, 1622
KpnI GGTACC 1 cut(s) 928
Ksp22I TGATCA 4 cut(s) 103, 183, 1255, 1408
KspAI GTTAAC 1 cut(s) 1270
LmnI GCTCC 6 cut(s) 48, 133, 161, 169, 700, 1636
Lsp1109I GCAGC 2 cut(s) 1324, 1585
LweI GCATC 7 cut(s) 391, 577, 608, 664, 820, 1222, 1357
MaeI CTAG 2 cut(s) 216, 525
MaeII ACGT 4 cut(s) 351, 463, 571, 613
MaeIII GTNAC 8 cut(s) 299, 401, 622, 838, 986, 1090, 1163, 1399
MboII GAAGA 6 cut(s) 233, 742, 908, 1090, 1366, 1447
MfeI CAATTG 1 cut(s) 1518
MflI RGATCY 2 cut(s) 452, 1567
MhlI GDGCHC 2 cut(s) 166, 1650
MluCI AATT 6 cut(s) 704, 908, 1136, 1212, 1389, 1518
MlyI GAGTC 2 cut(s) 492, 1030
MmeI TCCRAC 3 cut(s) 155, 370, 511
Mph1103I ATGCAT 1 cut(s) 876
MseI TTAA 6 cut(s) 153, 345, 447, 660, 972, 1269
MslI CAYNNNNRTG 1 cut(s) 1302
MspCI CTTAAG 1 cut(s) 971
MspI CCGG 2 cut(s) 1004, 1580
MspR9I CCNGG 4 cut(s) 750, 1004, 1536, 1581
MunI CAATTG 1 cut(s) 1518
MvaI CCWGG 2 cut(s) 750, 1536
MwoI GCNNNNNNNGC 8 cut(s) 263, 287, 596, 722, 1232, 1334, 1346, 1595
NciI CCSGG 2 cut(s) 1004, 1581
NcoI CCATGG 2 cut(s) 141, 1618
NlaIII CATG 7 cut(s) 145, 161, 878, 1091, 1332, 1432, 1622
NlaIV GGNNCC 2 cut(s) 926, 1632
NmuCI GTSAC 6 cut(s) 299, 401, 622, 1090, 1163, 1399
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 3 cut(s) 878, 1091, 1332
PaeI GCATGC 2 cut(s) 878, 1332
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 8 cut(s) 92, 146, 359, 477, 794, 934, 1486, 1557
PkrI GCNGC 2 cut(s) 1339, 1600
PleI GAGTC 2 cut(s) 491, 1030
PpsI GAGTC 2 cut(s) 491, 1030
Ppu21I YACGTR 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 1532
Psp124BI GAGCTC 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 1532
Psp6I CCWGG 2 cut(s) 748, 1534
PspGI CCWGG 2 cut(s) 748, 1534
PspN4I GGNNCC 2 cut(s) 926, 1632
PspPI GGNCC 3 cut(s) 631, 812, 1532
PspPPI RGGWCCY 1 cut(s) 1532
PsuI RGATCY 2 cut(s) 452, 1567
RsaI GTAC 5 cut(s) 110, 199, 893, 926, 1054
RsaNI GTAC 5 cut(s) 109, 198, 892, 925, 1053
RseI CAYNNNNRTG 1 cut(s) 1302
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 6 cut(s) 153, 345, 447, 660, 972, 1269
SatI GCNGC 2 cut(s) 1338, 1599
Sau96I GGNCC 3 cut(s) 631, 812, 1532
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 2 cut(s) 492, 1030
ScrFI CCNGG 4 cut(s) 750, 1004, 1536, 1581
SduI GDGCHC 2 cut(s) 166, 1650
SfaNI GCATC 7 cut(s) 391, 577, 608, 664, 820, 1222, 1357
SfcI CTRYAG 2 cut(s) 204, 434
SinI GGWCC 3 cut(s) 631, 812, 1532
SmiMI CAYNNNNRTG 1 cut(s) 1302
SmlI CTYRAG 6 cut(s) 282, 678, 887, 971, 1505, 1545
SmoI CTYRAG 6 cut(s) 282, 678, 887, 971, 1505, 1545
SphI GCATGC 2 cut(s) 878, 1332
Sse9I AATT 6 cut(s) 704, 908, 1136, 1212, 1389, 1518
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 1031
SspMI CTAG 2 cut(s) 216, 525
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 4 cut(s) 748, 1002, 1534, 1579
StyI CCWWGG 3 cut(s) 48, 141, 1618
TaiI ACGT 4 cut(s) 354, 466, 574, 616
TaqI TCGA 5 cut(s) 27, 366, 426, 1114, 1374
TaqII GACCGA 1 cut(s) 648
TasI AATT 6 cut(s) 704, 908, 1136, 1212, 1389, 1518
TatI WGTACW 2 cut(s) 108, 1052
TfiI GAWTC 8 cut(s) 92, 146, 359, 477, 794, 934, 1486, 1557
Tru1I TTAA 6 cut(s) 153, 345, 447, 660, 972, 1269
Tru9I TTAA 6 cut(s) 153, 345, 447, 660, 972, 1269
TscAI CASTG 6 cut(s) 244, 406, 1072, 1174, 1518, 1611
TseFI GTSAC 6 cut(s) 299, 401, 622, 1090, 1163, 1399
TseI GCWGC 2 cut(s) 1337, 1598
Tsp45I GTSAC 6 cut(s) 299, 401, 622, 1090, 1163, 1399
TspDTI ATGAA 3 cut(s) 807, 1214, 1625
TspGWI ACGGA 2 cut(s) 1428, 1550
TspRI CASTG 6 cut(s) 244, 406, 1072, 1174, 1518, 1611
Vha464I CTTAAG 1 cut(s) 971
VpaK11BI GGWCC 3 cut(s) 631, 812, 1532
XapI RAATTY 3 cut(s) 704, 908, 1389
XceI RCATGY 3 cut(s) 878, 1091, 1332
XspI CTAG 2 cut(s) 216, 525
ZrmI AGTACT 1 cut(s) 1054
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.