Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

60709526 .. 60712707

Gene Structure 3182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCGCATAAGTCTCTCGATCTCCCTCTAACGCAGCCTCACTTGCCTCTCATCACGAGTGACTGGTCAGTTGTAAAACGAGGATGGGATGCCCAAGTTCTCGGTGAAGCCCCCTATAAATTTAAGAATGCTGTTGAAGCTATCAAGACATTGAGAGCAGAACCAAATGCCAATGACCAGCATCTACCTCCTTTTGTTATTGTTGATGACAGTGGAAAGCCTGTGGGCCCAATAATTGATGGTGATGCTGTTGTAACATTCAACTTCCGAGCAGATCGTACGGTCATGGCTGCTAAGGCATTTGAGTATGCAGATTTTGATAAATTCGATAGAAACCCCCAGAGATTGATAGAACATCTGGGGAATGGGAATCGCTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTGGAAATTCCTAGTGATAGTGGAATCTCATTCAATGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGGGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATACCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCTATTGGAGGCCCCGGACTGGCACCTGGTGTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCGTCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

311

Amino Acids

33.79

Weight (kDa)

5.22

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	21 - 115	1.8e-18	BPG-independent PGAM N-terminus (iPGM_N)
Metalloenzyme	PF01676	117 - 296	5.7e-52	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	802
AciI	CCGC	3 cut(s)	5, 629, 820
AclWI	GGATC	1 cut(s)	834
AcsI	RAATTY	4 cut(s)	119, 323, 414, 648
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	2 cut(s)	280, 522
AfiI	CCNNNNNNNGG	3 cut(s)	397, 799, 839
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	6 cut(s)	137, 262, 442, 515, 767, 920
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	3 cut(s)	140, 608, 665
AluI	AGCT	3 cut(s)	140, 608, 665
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	4 cut(s)	226, 573, 790, 888
ApaI	GGGCCC	1 cut(s)	230
ApeKI	GCWGC	4 cut(s)	34, 290, 596, 857
ApoI	RAATTY	4 cut(s)	119, 323, 414, 648
AspS9I	GGNCC	4 cut(s)	226, 227, 791, 889
AsuC2I	CCSGG	2 cut(s)	709, 795
AsuHPI	GGTGA	4 cut(s)	116, 254, 575, 703
BaeGI	GKGCMC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	55
BbvI	GCAGC	4 cut(s)	46, 277, 583, 844
BccI	CCATC	2 cut(s)	78, 233
BceAI	ACGGC	1 cut(s)	892
BciT130I	CCWGG	1 cut(s)	807
BclI	TGATCA	3 cut(s)	601, 667, 867
BcnI	CCSGG	2 cut(s)	709, 795
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	420, 934
BisI	GCNGC	5 cut(s)	5, 35, 291, 597, 858
BlsI	GCNGC	5 cut(s)	6, 36, 292, 598, 859
Bme1390I	CCNGG	3 cut(s)	709, 795, 807
BmgT120I	GGNCC	4 cut(s)	226, 227, 791, 889
BmiI	GGNNCC	5 cut(s)	228, 793, 804, 818, 891
BmrFI	CCNGG	3 cut(s)	709, 795, 807
BmsI	GCATC	6 cut(s)	79, 190, 235, 371, 481, 616
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	709, 795
BsaAI	YACGTR	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	681, 793
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 799, 839
Bse1I	ACTGG	4 cut(s)	68, 565, 770, 804
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	681, 793
BseGI	GGATG	5 cut(s)	89, 94, 386, 496, 738
BseLI	CCNNNNNNNGG	3 cut(s)	397, 799, 839
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	4 cut(s)	68, 565, 770, 804
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	4 cut(s)	46, 277, 583, 844
BshFI	GGCC	4 cut(s)	228, 575, 792, 890
BshNI	GGYRCC	1 cut(s)	802
BsiSI	CCGG	2 cut(s)	708, 795
BsiWI	CGTACG	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	557, 895
BslI	CCNNNNNNNGG	3 cut(s)	397, 799, 839
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	2 cut(s)	557, 895
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	4 cut(s)	228, 575, 792, 890
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
BspACI	CCGC	3 cut(s)	5, 629, 820
BspANI	GGCC	4 cut(s)	228, 575, 792, 890
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	5 cut(s)	228, 793, 804, 818, 891
BspPI	GGATC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	802
BsrDI	GCAATG	1 cut(s)	777
BsrI	ACTGG	4 cut(s)	68, 565, 770, 804
BssECI	CCNNGG	2 cut(s)	681, 793
BssMI	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
BssSI	CACGAG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	2 cut(s)	212, 283
Bst6I	CTCTTC	3 cut(s)	689, 723, 768
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	2 cut(s)	294, 500
BstF5I	GGATG	5 cut(s)	89, 94, 386, 496, 738
BstKTI	GATC	6 cut(s)	22, 277, 604, 670, 829, 870
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 137, 296, 381, 482, 491, 593, 605, 854
BstNI	CCWGG	1 cut(s)	807
BstSCI	CCNGG	3 cut(s)	707, 793, 805
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	4 cut(s)	46, 277, 583, 844
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BsuRI	GGCC	4 cut(s)	228, 575, 792, 890
BtsCI	GGATG	5 cut(s)	89, 94, 386, 496, 738
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	589
Cfr13I	GGNCC	4 cut(s)	226, 227, 791, 889
CsiI	ACCWGGT	1 cut(s)	805
Csp6I	GTAC	2 cut(s)	279, 521
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	4 cut(s)	286, 547, 671, 878
CviQI	GTAC	2 cut(s)	279, 521
DdeI	CTNAG	2 cut(s)	294, 500
DpnI	GATC	6 cut(s)	21, 276, 603, 669, 828, 869
DpnII	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
DraIII	CACNNNGTG	1 cut(s)	809
Eam1104I	CTCTTC	3 cut(s)	689, 723, 768
EarI	CTCTTC	3 cut(s)	689, 723, 768
Eco24I	GRGCYC	1 cut(s)	230
EcoO109I	RGGNCCY	2 cut(s)	791, 889
EcoRII	CCWGG	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	4 cut(s)	289, 550, 674, 881
FaqI	GGGAC	2 cut(s)	557, 895
FatI	CATG	4 cut(s)	285, 546, 670, 877
FbaI	TGATCA	3 cut(s)	601, 667, 867
Fnu4HI	GCNGC	5 cut(s)	5, 35, 291, 597, 858
FokI	GGATG	5 cut(s)	96, 101, 393, 503, 725
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	5 cut(s)	5, 35, 291, 597, 858
FspBI	CTAG	2 cut(s)	420, 934
GluI	GCNGC	5 cut(s)	5, 35, 291, 597, 858
HaeIII	GGCC	4 cut(s)	228, 575, 792, 890
HapII	CCGG	2 cut(s)	708, 795
Hin1II	CATG	4 cut(s)	289, 550, 674, 881
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	370, 432, 619
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	2 cut(s)	708, 795
HphI	GGTGA	4 cut(s)	116, 254, 575, 703
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	3 cut(s)	269, 501, 834
Hpy188III	TCNNGA	7 cut(s)	17, 55, 145, 378, 613, 623, 722
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	2 cut(s)	212, 283
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	4 cut(s)	311, 591, 860, 877
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 137, 296, 381, 482, 491, 593, 605, 854
HpyF3I	CTNAG	2 cut(s)	294, 500
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	4 cut(s)	289, 550, 674, 881
Ksp22I	TGATCA	3 cut(s)	601, 667, 867
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
Lsp1109I	GCAGC	4 cut(s)	46, 277, 583, 844
LweI	GCATC	6 cut(s)	79, 190, 235, 371, 481, 616
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	2 cut(s)	420, 934
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	4 cut(s)	59, 253, 563, 658
MalI	GATC	6 cut(s)	21, 276, 603, 669, 828, 869
MboI	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
MboII	GAAGA	4 cut(s)	706, 710, 755, 821
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	6 cut(s)	119, 234, 323, 414, 579, 648
MseI	TTAA	3 cut(s)	123, 387, 528
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	2 cut(s)	708, 795
MspR9I	CCNGG	3 cut(s)	709, 795, 807
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	9 cut(s)	43, 137, 296, 381, 482, 491, 593, 605, 854
NciI	CCSGG	2 cut(s)	709, 795
NdeII	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
NlaIII	CATG	4 cut(s)	289, 550, 674, 881
NlaIV	GGNNCC	5 cut(s)	228, 793, 804, 818, 891
NmuCI	GTSAC	2 cut(s)	59, 563
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	370, 432, 619
Pfl23II	CGTACG	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	6, 36, 292, 598, 859
Ppu21I	YACGTR	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspLI	CGTACG	1 cut(s)	278
PspN4I	GGNNCC	5 cut(s)	228, 793, 804, 818, 891
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	4 cut(s)	226, 227, 791, 889
PsuI	RGATCY	1 cut(s)	826
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	2 cut(s)	280, 522
RsaNI	GTAC	2 cut(s)	279, 521
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	3 cut(s)	123, 387, 528
SatI	GCNGC	5 cut(s)	5, 35, 291, 597, 858
Sau3AI	GATC	6 cut(s)	19, 274, 601, 667, 826, 867
Sau96I	GGNCC	4 cut(s)	226, 227, 791, 889
ScrFI	CCNGG	3 cut(s)	709, 795, 807
SduI	GDGCHC	1 cut(s)	230
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	6 cut(s)	79, 190, 235, 371, 481, 616
SmiMI	CAYNNNNRTG	1 cut(s)	561
Sse9I	AATT	6 cut(s)	119, 234, 323, 414, 579, 648
SsiI	CCGC	3 cut(s)	5, 629, 820
SspMI	CTAG	2 cut(s)	420, 934
StyD4I	CCNGG	3 cut(s)	707, 793, 805
TaaI	ACNGT	2 cut(s)	212, 283
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	2 cut(s)	18, 327
TasI	AATT	6 cut(s)	119, 234, 323, 414, 579, 648
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	370, 432, 619
Tru1I	TTAA	3 cut(s)	123, 387, 528
Tru9I	TTAA	3 cut(s)	123, 387, 528
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	59, 563
TseI	GCWGC	4 cut(s)	34, 290, 596, 857
Tsp45I	GTSAC	2 cut(s)	59, 563
TspDTI	ATGAA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	217
XapI	RAATTY	4 cut(s)	119, 323, 414, 648
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	2 cut(s)	420, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.