Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001304.1

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

58178 .. 62386

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001304.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atggctttcgcagcaatgaaacccacaaagcctggtctcgaggagacacaggagcagatccagaagatcaggatcactctctcttccaagaacgtcaagaacctggagaaaggttcgcggtgccaaggacaagaggatcagggtgacgggaccagtgaggatgcctaccaaggttctgcacattaccgccaggaagtcaccctgtggagaaggaatgtttcgcttcaatcaagcagacttggcagtttggatattcagaatgacaggtcagttgtaaaacgaggatgggatgcccaagttctcggggaagccccctataaatttaagaatgctgttgaagctatcaagacattgagagtagaaccaaatgccaatgaccagtatctacctccttttgttattgttggtgatagtggaaagcctgtgggcccaatagttgatggtgatgctgttgtaacattcaacttccgagcagatcgtatggtcatggctgctgaggcatttgagtatgcagattttgataaattcgatagacttcgagttcctaaaatccgttatgctggtatgcttcagtatgatggtgagctgaagcttccaacccgttaccttgtagaacccccagggataacatccggggaatatctaacttacaacggacttttctttccctccaatgtaaatgtgtgttttgtcatctatggaatggcggaatatgtggaaattccaagtgatagtggaatctcattcaacgtccagccaaagatgaaggcattggagattgctgaaaaggcaagggatgctattctgaccaagaagtttttacaggtacgtgttaacctacccaatggggacatggtggggcatactggtgacattgaggccacaattgttgcttgcaaggctgctgatcaagctgtcaagatgattcttgatgcggtagagcaagtgggtggaatttatgttattacagctgatcatgccatcatggttcccgttgctattggaagccccggactagcacctggtgttcggttccgcaaggatcttccaagtggtggtcttgccaatgttgctacaactatgatcaatctgcatggatttgaggcccctgctgactatgagccgtccctcattgaagttgttgataactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

383

Amino Acids

42.03

Weight (kDa)

5.26

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	1055
AccII	CGCG	1 cut(s)	118
AciI	CCGC	5 cut(s)	118, 187, 707, 935, 1036
AclWI	GGATC	4 cut(s)	52, 80, 144, 1050
AcsI	RAATTY	4 cut(s)	320, 524, 720, 954
AcuI	CTGAAG	2 cut(s)	554, 608
AdeI	CACNNNGTG	2 cut(s)	204, 1025
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	1 cut(s)	1055
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	5 cut(s)	227, 338, 463, 748, 1136
AjnI	CCWGG	5 cut(s)	31, 102, 189, 619, 1021
AluBI	AGCT	5 cut(s)	341, 586, 592, 914, 971
AluI	AGCT	5 cut(s)	341, 586, 592, 914, 971
Alw26I	GTCTC	2 cut(s)	38, 41
AlwI	GGATC	4 cut(s)	52, 80, 144, 1050
Ama87I	CYCGRG	2 cut(s)	38, 302
AoxI	GGCC	3 cut(s)	427, 879, 1104
ApaI	GGGCCC	1 cut(s)	431
ApeKI	GCWGC	3 cut(s)	11, 491, 902
ApoI	RAATTY	4 cut(s)	320, 524, 720, 954
AspS9I	GGNCC	4 cut(s)	150, 427, 428, 1105
AsuC2I	CCSGG	2 cut(s)	634, 1011
AsuHPI	GGTGA	6 cut(s)	155, 190, 419, 455, 593, 881
AvaI	CYCGRG	2 cut(s)	38, 302
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	431
BanI	GGYRCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	431
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	23, 478, 889
BccI	CCATC	4 cut(s)	279, 434, 572, 989
BceAI	ACGGC	1 cut(s)	1108
BciT130I	CCWGG	5 cut(s)	33, 104, 191, 621, 1023
BclI	TGATCA	3 cut(s)	907, 973, 1083
BcnI	CCSGG	2 cut(s)	634, 1011
BcoDI	GTCTC	2 cut(s)	38, 41
BfaI	CTAG	2 cut(s)	1016, 1150
BisI	GCNGC	3 cut(s)	12, 492, 903
BlsI	GCNGC	3 cut(s)	13, 493, 904
Bme1390I	CCNGG	7 cut(s)	33, 104, 191, 621, 634, 1011, 1023
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	2 cut(s)	38, 302
BmgT120I	GGNCC	4 cut(s)	150, 427, 428, 1105
BmiI	GGNNCC	6 cut(s)	122, 151, 429, 990, 1034, 1107
BmrFI	CCNGG	7 cut(s)	33, 104, 191, 621, 634, 1011, 1023
BmsI	GCATC	5 cut(s)	151, 280, 436, 787, 922
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	495
BpuMI	CCSGG	2 cut(s)	634, 1011
BsaAI	YACGTR	1 cut(s)	830
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	6 cut(s)	124, 169, 619, 620, 633, 1009
Bsc4I	CCNNNNNNNGG	1 cut(s)	1055
Bse1I	ACTGG	3 cut(s)	153, 379, 871
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	5 cut(s)	33, 104, 191, 621, 1023
BseDI	CCNNGG	6 cut(s)	124, 169, 619, 620, 633, 1009
BseGI	GGATG	5 cut(s)	166, 290, 295, 629, 802
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	1055
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	3 cut(s)	153, 379, 871
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	23, 478, 889
BsgI	GTGCAG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	3 cut(s)	429, 881, 1106
BshNI	GGYRCC	1 cut(s)	120
BsiHKCI	CYCGRG	2 cut(s)	38, 302
BsiSI	CCGG	2 cut(s)	633, 1011
BslFI	GGGAC	3 cut(s)	163, 863, 1111
BslI	CCNNNNNNNGG	1 cut(s)	1055
BsmAI	GTCTC	2 cut(s)	38, 41
BsmFI	GGGAC	3 cut(s)	163, 863, 1111
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	429, 881, 1106
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	38, 302
Bsp120I	GGGCCC	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
BspACI	CCGC	5 cut(s)	118, 187, 707, 935, 1036
BspANI	GGCC	3 cut(s)	429, 881, 1106
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	6 cut(s)	122, 151, 429, 990, 1034, 1107
BspPI	GGATC	4 cut(s)	52, 80, 144, 1050
BspT107I	GGYRCC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	3 cut(s)	153, 379, 871
BssECI	CCNNGG	6 cut(s)	124, 169, 619, 620, 633, 1009
BssMI	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
BssT1I	CCWWGG	2 cut(s)	124, 169
Bst2UI	CCWGG	5 cut(s)	33, 104, 191, 621, 1023
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	1 cut(s)	895
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	5 cut(s)	166, 290, 295, 629, 802
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	9 cut(s)	60, 69, 75, 139, 478, 910, 976, 1045, 1086
BstMAI	GTCTC	2 cut(s)	38, 41
BstMBI	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
BstNI	CCWGG	5 cut(s)	33, 104, 191, 621, 1023
BstSCI	CCNGG	7 cut(s)	31, 102, 189, 619, 632, 1009, 1021
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	23, 478, 889
BstX2I	RGATCY	2 cut(s)	57, 1042
BstYI	RGATCY	2 cut(s)	57, 1042
BsuRI	GGCC	3 cut(s)	429, 881, 1106
BtsCI	GGATG	5 cut(s)	166, 290, 295, 629, 802
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	895
Cfr13I	GGNCC	4 cut(s)	150, 427, 428, 1105
CsiI	ACCWGGT	1 cut(s)	1021
Csp6I	GTAC	1 cut(s)	827
CspCI	CAANNNNNGTGG	2 cut(s)	871, 906
CviAII	CATG	5 cut(s)	487, 853, 977, 985, 1094
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	9 cut(s)	59, 68, 74, 138, 477, 909, 975, 1044, 1085
DpnII	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
DraIII	CACNNNGTG	2 cut(s)	204, 1025
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	722
Eco130I	CCWWGG	2 cut(s)	124, 169
Eco24I	GRGCYC	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	150
Eco57I	CTGAAG	2 cut(s)	554, 608
Eco88I	CYCGRG	2 cut(s)	38, 302
EcoO109I	RGGNCCY	1 cut(s)	1105
EcoRII	CCWGG	5 cut(s)	31, 102, 189, 619, 1021
EcoT14I	CCWWGG	2 cut(s)	124, 169
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	2 cut(s)	124, 169
FaeI	CATG	5 cut(s)	490, 856, 980, 988, 1097
FaqI	GGGAC	3 cut(s)	163, 863, 1111
FatI	CATG	5 cut(s)	486, 852, 976, 984, 1093
FbaI	TGATCA	3 cut(s)	907, 973, 1083
Fnu4HI	GCNGC	3 cut(s)	12, 492, 903
FokI	GGATG	5 cut(s)	173, 297, 302, 616, 809
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	12, 492, 903
FspBI	CTAG	2 cut(s)	1016, 1150
GluI	GCNGC	3 cut(s)	12, 492, 903
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	429, 881, 1106
HapII	CCGG	2 cut(s)	633, 1011
Hin1II	CATG	5 cut(s)	490, 856, 980, 988, 1097
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	738, 925
HpaI	GTTAAC	1 cut(s)	835
HpaII	CCGG	2 cut(s)	633, 1011
HphI	GGTGA	6 cut(s)	155, 190, 419, 455, 593, 881
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	3 cut(s)	258, 470, 807
Hpy188III	TCNNGA	7 cut(s)	38, 61, 70, 97, 346, 919, 929
Hpy8I	GTNNAC	1 cut(s)	835
HpyAV	CCTTC	2 cut(s)	204, 760
HpyCH4IV	ACGT	3 cut(s)	93, 750, 829
HpyCH4V	TGCA	4 cut(s)	179, 512, 897, 1093
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	3 cut(s)	93, 750, 829
Hsp92II	CATG	5 cut(s)	490, 856, 980, 988, 1097
Ksp22I	TGATCA	3 cut(s)	907, 973, 1083
KspAI	GTTAAC	1 cut(s)	835
Kzo9I	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	23, 478, 889
LweI	GCATC	5 cut(s)	151, 280, 436, 787, 922
MabI	ACCWGGT	1 cut(s)	1021
MaeI	CTAG	2 cut(s)	1016, 1150
MaeII	ACGT	3 cut(s)	93, 750, 829
MaeIII	GTNAC	5 cut(s)	143, 196, 454, 602, 869
MalI	GATC	9 cut(s)	59, 68, 74, 138, 477, 909, 975, 1044, 1085
MboI	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
MboII	GAAGA	3 cut(s)	75, 76, 1037
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	2 cut(s)	57, 1042
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	5 cut(s)	320, 524, 720, 885, 954
MmeI	TCCRAC	1 cut(s)	620
MseI	TTAA	2 cut(s)	324, 834
MslI	CAYNNNNRTG	1 cut(s)	867
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	2 cut(s)	633, 1011
MspR9I	CCNGG	7 cut(s)	33, 104, 191, 621, 634, 1011, 1023
MunI	CAATTG	1 cut(s)	885
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	5 cut(s)	33, 104, 191, 621, 1023
MvnI	CGCG	1 cut(s)	118
NciI	CCSGG	2 cut(s)	634, 1011
NdeII	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
NlaIII	CATG	5 cut(s)	490, 856, 980, 988, 1097
NlaIV	GGNNCC	6 cut(s)	122, 151, 429, 990, 1034, 1107
NmuCI	GTSAC	3 cut(s)	143, 196, 869
PaeR7I	CTCGAG	1 cut(s)	38
PasI	CCCWGGG	1 cut(s)	620
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	738, 925
PflMI	CCANNNNNTGG	1 cut(s)	1055
PkrI	GCNGC	3 cut(s)	13, 493, 904
Ppu21I	YACGTR	1 cut(s)	830
Psp6I	CCWGG	5 cut(s)	31, 102, 189, 619, 1021
PspGI	CCWGG	5 cut(s)	31, 102, 189, 619, 1021
PspN4I	GGNNCC	6 cut(s)	122, 151, 429, 990, 1034, 1107
PspOMI	GGGCCC	1 cut(s)	427
PspPI	GGNCC	4 cut(s)	150, 427, 428, 1105
PsuI	RGATCY	2 cut(s)	57, 1042
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
RseI	CAYNNNNRTG	1 cut(s)	867
SaqAI	TTAA	2 cut(s)	324, 834
SatI	GCNGC	3 cut(s)	12, 492, 903
Sau3AI	GATC	9 cut(s)	57, 66, 72, 136, 475, 907, 973, 1042, 1083
Sau96I	GGNCC	4 cut(s)	150, 427, 428, 1105
ScrFI	CCNGG	7 cut(s)	33, 104, 191, 621, 634, 1011, 1023
SduI	GDGCHC	1 cut(s)	431
SexAI	ACCWGGT	1 cut(s)	1021
SfaNI	GCATC	5 cut(s)	151, 280, 436, 787, 922
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	150
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	867
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	5 cut(s)	320, 524, 720, 885, 954
SsiI	CCGC	5 cut(s)	118, 187, 707, 935, 1036
SspMI	CTAG	2 cut(s)	1016, 1150
StyD4I	CCNGG	7 cut(s)	31, 102, 189, 619, 632, 1009, 1021
StyI	CCWWGG	2 cut(s)	124, 169
TaiI	ACGT	3 cut(s)	96, 753, 832
TaqI	TCGA	3 cut(s)	39, 528, 538
TasI	AATT	5 cut(s)	320, 524, 720, 885, 954
TfiI	GAWTC	2 cut(s)	738, 925
Tru1I	TTAA	2 cut(s)	324, 834
Tru9I	TTAA	2 cut(s)	324, 834
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	3 cut(s)	143, 196, 869
TseI	GCWGC	3 cut(s)	11, 491, 902
Tsp45I	GTSAC	3 cut(s)	143, 196, 869
TspDTI	ATGAA	2 cut(s)	32, 779
TspGWI	ACGGA	2 cut(s)	542, 669
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	1055
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	4 cut(s)	320, 524, 720, 954
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	2 cut(s)	1016, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.