Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Forward (+)

7695333 .. 7698869

Gene Structure 3537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGCAGCGCCGGAGGCTCATGGAAATTGGCGGATCACCCGAAGCTGCCGAAGGGGAAGGTCATTGCTCTGATCGTGTTGGACGGTTGGGGCGAGGCCAAGCCCGATCAGTATAACTGTATCCACGTGGCGGAGACTCCCACCATGGATTCGCTTAAGAATCTTCCAACCCGTTACCTTGTTGATCCCCCAGAGATTGATAGAACATCCGGGGAATATCTAACTTACAACGGTGTCCGTACTTTTGCCTGCAGTGAGACTGTAAAATTTGGCCATGTTACTTTCTTCTGGAATGGGAATCGCTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGTAAACCTACCCAATGGGGACATGGTGGGGCATACTGGTGACATTGAGGCCACAGTTGTTGCTTGCAAGGCTGCTGATGAAGCTGTCAAGATGATTCTTGATGCGGTAGATCAAGTGGGTGGAATTTATGTTGTTACAGCCGATCATGGTAACGCCGAGGATATGGTGAAGAGAAATAAGACTGGGCAACCTGCTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTGAACCAGTTCCAATTGCTATTGGAGGCCCCGGACTGACACCTGGTGTTCGGTTCCGCAAGGATCTTCCGAGAGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCGTCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

287

Amino Acids

31.03

Weight (kDa)

5.21

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	21 - 54	1.5e-08	Metalloenzyme superfamily
Metalloenzyme	PF01676	62 - 272	6.4e-66	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AciI	CCGC	4 cut(s)	32, 131, 557, 748
AclWI	GGATC	3 cut(s)	42, 179, 762
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	3 cut(s)	266, 342, 576
AcvI	CACGTG	1 cut(s)	127
AdeI	CACNNNGTG	1 cut(s)	737
AfaI	GTAC	2 cut(s)	241, 450
AfiI	CCNNNNNNNGG	3 cut(s)	130, 325, 767
AflII	CTTAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	370, 443, 695, 848
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	2 cut(s)	46, 536
AluI	AGCT	2 cut(s)	46, 536
Alw26I	GTCTC	2 cut(s)	128, 251
AlwI	GGATC	3 cut(s)	42, 179, 762
AoxI	GGCC	5 cut(s)	96, 271, 501, 718, 816
ApeKI	GCWGC	4 cut(s)	6, 46, 524, 785
ApoI	RAATTY	3 cut(s)	266, 342, 576
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	719, 817
AsuC2I	CCSGG	2 cut(s)	211, 723
AsuHPI	GGTGA	3 cut(s)	29, 503, 631
BalI	TGGCCA	1 cut(s)	273
BbrPI	CACGTG	1 cut(s)	127
BbvI	GCAGC	4 cut(s)	18, 33, 511, 772
BceAI	ACGGC	1 cut(s)	820
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	795
BcnI	CCSGG	2 cut(s)	211, 723
BcoDI	GTCTC	2 cut(s)	128, 251
BfaI	CTAG	1 cut(s)	862
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	7, 47, 525, 786
BlsI	GCNGC	4 cut(s)	8, 48, 526, 787
Bme1390I	CCNGG	3 cut(s)	211, 723, 735
BmgT120I	GGNCC	2 cut(s)	719, 817
BmiI	GGNNCC	3 cut(s)	721, 746, 819
BmrFI	CCNGG	3 cut(s)	211, 723, 735
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	299, 409, 544
BmuI	ACTGGG	1 cut(s)	645
BpuMI	CCSGG	2 cut(s)	211, 723
BsaAI	YACGTR	2 cut(s)	127, 452
BsaJI	CCNNGG	4 cut(s)	144, 210, 609, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 325, 767
Bse1I	ACTGG	3 cut(s)	493, 640, 698
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	4 cut(s)	144, 210, 609, 721
BseGI	GGATG	4 cut(s)	206, 314, 424, 666
BseLI	CCNNNNNNNGG	3 cut(s)	130, 325, 767
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	3 cut(s)	493, 640, 698
BseXI	GCAGC	4 cut(s)	18, 33, 511, 772
BshFI	GGCC	5 cut(s)	98, 273, 503, 720, 818
BsiSI	CCGG	3 cut(s)	12, 210, 723
BslFI	GGGAC	2 cut(s)	485, 823
BslI	CCNNNNNNNGG	3 cut(s)	130, 325, 767
BsmAI	GTCTC	2 cut(s)	128, 251
BsmFI	GGGAC	2 cut(s)	485, 823
BsnI	GGCC	5 cut(s)	98, 273, 503, 720, 818
Bsp143I	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	4 cut(s)	32, 131, 557, 748
BspANI	GGCC	5 cut(s)	98, 273, 503, 720, 818
BspCNI	CTCAG	1 cut(s)	420
BspLI	GGNNCC	3 cut(s)	721, 746, 819
BspMAI	CTGCAG	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	3 cut(s)	42, 179, 762
BspTI	CTTAAG	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	493, 640, 698
BssECI	CCNNGG	4 cut(s)	144, 210, 609, 721
BssMI	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	5 cut(s)	86, 119, 233, 262, 508
Bst6I	CTCTTC	1 cut(s)	617
BstAFI	CTTAAG	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	2 cut(s)	127, 452
BstC8I	GCNNGC	2 cut(s)	250, 517
BstDEI	CTNAG	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	4 cut(s)	206, 314, 424, 666
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	8 cut(s)	37, 75, 109, 187, 565, 598, 757, 798
BstMAI	GTCTC	2 cut(s)	128, 251
BstMBI	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 309, 410, 419, 521, 533, 782
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	3 cut(s)	209, 721, 733
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	4 cut(s)	18, 33, 511, 772
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	5 cut(s)	98, 273, 503, 720, 818
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	4 cut(s)	206, 314, 424, 666
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	2 cut(s)	250, 517
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	719, 817
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	240, 449
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	6 cut(s)	21, 145, 275, 475, 599, 806
CviQI	GTAC	2 cut(s)	240, 449
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	8 cut(s)	36, 74, 108, 186, 564, 597, 756, 797
DpnII	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
DraIII	CACNNNGTG	1 cut(s)	737
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
EciI	GGCGGA	2 cut(s)	47, 146
Eco130I	CCWWGG	1 cut(s)	144
Eco72I	CACGTG	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	719, 817
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	6 cut(s)	24, 148, 278, 478, 602, 809
FaqI	GGGAC	2 cut(s)	485, 823
FatI	CATG	6 cut(s)	20, 144, 274, 474, 598, 805
FbaI	TGATCA	1 cut(s)	795
Fnu4HI	GCNGC	4 cut(s)	7, 47, 525, 786
FokI	GGATG	4 cut(s)	193, 321, 431, 653
Fsp4HI	GCNGC	4 cut(s)	7, 47, 525, 786
FspBI	CTAG	1 cut(s)	862
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	4 cut(s)	7, 47, 525, 786
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	5 cut(s)	98, 273, 503, 720, 818
HapII	CCGG	3 cut(s)	12, 210, 723
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	6 cut(s)	24, 148, 278, 478, 602, 809
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	6 cut(s)	136, 149, 160, 298, 360, 547
HpaII	CCGG	3 cut(s)	12, 210, 723
HphI	GGTGA	3 cut(s)	29, 503, 631
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	72, 429, 762
Hpy188III	TCNNGA	6 cut(s)	289, 306, 541, 551, 650, 692
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	3 cut(s)	46, 52, 382
HpyCH4III	ACNGT	5 cut(s)	86, 119, 233, 262, 508
HpyCH4IV	ACGT	3 cut(s)	126, 372, 451
HpyCH4V	TGCA	4 cut(s)	252, 519, 788, 805
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 309, 410, 419, 521, 533, 782
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	3 cut(s)	126, 372, 451
Hsp92II	CATG	6 cut(s)	24, 148, 278, 478, 602, 809
HspAI	GCGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
Lsp1109I	GCAGC	4 cut(s)	18, 33, 511, 772
LweI	GCATC	3 cut(s)	299, 409, 544
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	1 cut(s)	862
MaeII	ACGT	3 cut(s)	126, 372, 451
MaeIII	GTNAC	5 cut(s)	173, 277, 491, 586, 602
MalI	GATC	8 cut(s)	36, 74, 108, 186, 564, 597, 756, 797
MboI	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
MboII	GAAGA	4 cut(s)	155, 277, 634, 749
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	1 cut(s)	754
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	5 cut(s)	26, 266, 342, 576, 705
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	60, 191
Mox20I	TGGCCA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	2 cut(s)	156, 315
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	3 cut(s)	12, 210, 723
MspR9I	CCNGG	3 cut(s)	211, 723, 735
MunI	CAATTG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	7 cut(s)	15, 309, 410, 419, 521, 533, 782
NciI	CCSGG	2 cut(s)	211, 723
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
NlaIII	CATG	6 cut(s)	24, 148, 278, 478, 602, 809
NlaIV	GGNNCC	3 cut(s)	721, 746, 819
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	5 cut(s)	149, 160, 298, 360, 547
PkrI	GCNGC	4 cut(s)	8, 48, 526, 787
PleI	GAGTC	1 cut(s)	130
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	130
Ppu21I	YACGTR	2 cut(s)	127, 452
Psp6I	CCWGG	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	3 cut(s)	721, 746, 819
PspPI	GGNCC	2 cut(s)	719, 817
PstI	CTGCAG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	2 cut(s)	241, 450
RsaNI	GTAC	2 cut(s)	240, 449
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	156, 315
SatI	GCNGC	4 cut(s)	7, 47, 525, 786
Sau3AI	GATC	8 cut(s)	34, 72, 106, 184, 562, 595, 754, 795
Sau96I	GGNCC	2 cut(s)	719, 817
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	3 cut(s)	211, 723, 735
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	3 cut(s)	299, 409, 544
SfcI	CTRYAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	5 cut(s)	26, 266, 342, 576, 705
SsiI	CCGC	4 cut(s)	32, 131, 557, 748
SspMI	CTAG	1 cut(s)	862
StyD4I	CCNGG	3 cut(s)	209, 721, 733
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	5 cut(s)	86, 119, 233, 262, 508
TaiI	ACGT	3 cut(s)	129, 375, 454
TasI	AATT	5 cut(s)	26, 266, 342, 576, 705
TfiI	GAWTC	5 cut(s)	149, 160, 298, 360, 547
Tru1I	TTAA	2 cut(s)	156, 315
Tru9I	TTAA	2 cut(s)	156, 315
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	4 cut(s)	6, 46, 524, 785
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	401, 546
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	259
Vha464I	CTTAAG	1 cut(s)	155
XapI	RAATTY	3 cut(s)	266, 342, 576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.