Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

32257770 .. 32258753

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG308400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCTCAATATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATGCCGTGGATATGGTGAAGAGAAATAAGACAGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCTCGCACTCTTCAACCAGTTCCCGTTGCTATTGGAGGCCCCGGACTGGCACCTAGTGTTTGGTTCCGCAAGGATCTTCCAAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCGTCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

109

Amino Acids

11.52

Weight (kDa)

4.85

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	1 - 94	6.1e-18	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	233
AciI	CCGC	2 cut(s)	23, 214
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	193, 233
AgsI	TTSAA	2 cut(s)	161, 314
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	2 cut(s)	184, 282
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	185, 283
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	238
BceAI	ACGGC	2 cut(s)	59, 286
BclI	TGATCA	2 cut(s)	61, 261
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	2 cut(s)	201, 328
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	185, 283
BmiI	GGNNCC	4 cut(s)	187, 198, 212, 285
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	75, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 233
Bse1I	ACTGG	2 cut(s)	164, 198
BseDI	CCNNGG	2 cut(s)	75, 187
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	193, 233
BseNI	ACTGG	2 cut(s)	164, 198
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	186, 284
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	193, 233
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	186, 284
Bsp143I	GATC	3 cut(s)	61, 220, 261
BspACI	CCGC	2 cut(s)	23, 214
BspANI	GGCC	2 cut(s)	186, 284
BspLI	GGNNCC	4 cut(s)	187, 198, 212, 285
BspPI	GGATC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	164, 198
BssECI	CCNNGG	2 cut(s)	75, 187
BssMI	GATC	3 cut(s)	61, 220, 261
Bst6I	CTCTTC	3 cut(s)	83, 117, 162
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	64, 223, 264
BstMBI	GATC	3 cut(s)	61, 220, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	186, 284
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	185, 283
CviAII	CATG	2 cut(s)	65, 272
CviJI	RGCY	4 cut(s)	59, 186, 284, 301
CviKI_1	RGCY	4 cut(s)	59, 186, 284, 301
DpnI	GATC	3 cut(s)	63, 222, 263
DpnII	GATC	3 cut(s)	61, 220, 261
DraIII	CACNNNGTG	1 cut(s)	203
Eam1104I	CTCTTC	3 cut(s)	83, 117, 162
EarI	CTCTTC	3 cut(s)	83, 117, 162
EcoO109I	RGGNCCY	2 cut(s)	185, 283
FaeI	CATG	2 cut(s)	68, 275
FaiI	YATR	7 cut(s)	11, 48, 66, 83, 260, 273, 297
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	2 cut(s)	64, 271
FbaI	TGATCA	2 cut(s)	61, 261
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	2 cut(s)	201, 328
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	186, 284
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	2 cut(s)	68, 275
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	17, 116
HpyCH4V	TGCA	2 cut(s)	254, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	68, 275
Ksp22I	TGATCA	2 cut(s)	61, 261
Kzo9I	GATC	3 cut(s)	61, 220, 261
LpnPI	CCDG	5 cut(s)	87, 177, 179, 202, 300
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	201, 328
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	63, 222, 263
MboI	GATC	3 cut(s)	61, 220, 261
MboII	GAAGA	4 cut(s)	100, 104, 149, 215
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	5 cut(s)	120, 157, 176, 274, 317
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	3 cut(s)	61, 220, 261
NlaIII	CATG	2 cut(s)	68, 275
NlaIV	GGNNCC	4 cut(s)	187, 198, 212, 285
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	253
PspN4I	GGNNCC	4 cut(s)	187, 198, 212, 285
PspPI	GGNCC	2 cut(s)	185, 283
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	69
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	61, 220, 261
Sau96I	GGNCC	2 cut(s)	185, 283
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	4 cut(s)	61, 112, 149, 202
SfaNI	GCATC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	23, 214
SspMI	CTAG	2 cut(s)	201, 328
StyD4I	CCNGG	1 cut(s)	187
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	42
XspI	CTAG	2 cut(s)	201, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.