Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

47860936 .. 47861874

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCTAGCAGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCTATTACAGGCCCCGGACTGGCACCTAGTGTTCGGTTCCGCAAGGATCTTCTGAGTGCTGGTCTTGCCAATGTTGCTGCAACTATGATCACTCTGCATGGATTTGCCCCTGCTGACTATGAGCCGTCCCTCATTGAAGTTGTTGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

77

Amino Acids

8.05

Weight (kDa)

5.0

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	18 - 63	2e-08	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	68, 218
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	3 cut(s)	5, 108, 232
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	94, 105, 119
BmrFI	CCNGG	1 cut(s)	96
BmtI	GCTAGC	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	71, 105
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	71, 105
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	127, 168
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	94, 105, 119
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	71, 105
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	127, 168
Bst6I	CTCTTC	2 cut(s)	24, 69
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	130, 171
BstMBI	GATC	2 cut(s)	127, 168
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 146, 155
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	92
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	2 cut(s)	93, 205
CviKI_1	RGCY	2 cut(s)	93, 205
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	2 cut(s)	129, 170
DpnII	GATC	2 cut(s)	127, 168
DraIII	CACNNNGTG	1 cut(s)	110
Eam1104I	CTCTTC	2 cut(s)	24, 69
EarI	CTCTTC	2 cut(s)	24, 69
EcoO109I	RGGNCCY	1 cut(s)	92
FaeI	CATG	1 cut(s)	182
FaiI	YATR	3 cut(s)	167, 180, 201
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	3 cut(s)	5, 108, 232
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	1 cut(s)	182
HpaII	CCGG	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	161, 178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 146, 155
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	127, 168
LpnPI	CCDG	6 cut(s)	75, 84, 86, 109, 126, 204
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	3 cut(s)	5, 108, 232
MalI	GATC	2 cut(s)	129, 170
MboI	GATC	2 cut(s)	127, 168
MboII	GAAGA	3 cut(s)	11, 56, 122
MflI	RGATCY	1 cut(s)	127
MnlI	CCTC	3 cut(s)	27, 64, 221
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	10, 146, 155
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	127, 168
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	3 cut(s)	94, 105, 119
PkrI	GCNGC	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	94, 105, 119
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	127
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	127, 168
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	3 cut(s)	19, 56, 109
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	3 cut(s)	5, 108, 232
StyD4I	CCNGG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	158
XspI	CTAG	3 cut(s)	5, 108, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.