Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Forward (+)

8468108 .. 8468942

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTGGGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATGCCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCTATTGGAGGCCCCGGACTGGCACCTGGTGTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCATCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

129

Amino Acids

13.44

Weight (kDa)

4.98

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	1 - 114	3.7e-32	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AciI	CCGC	2 cut(s)	83, 274
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	253, 293
AgsI	TTSAA	2 cut(s)	221, 374
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	62, 119
AluI	AGCT	2 cut(s)	62, 119
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	3 cut(s)	27, 244, 342
ApeKI	GCWGC	2 cut(s)	50, 311
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	245, 343
AsuC2I	CCSGG	2 cut(s)	163, 249
AsuHPI	GGTGA	2 cut(s)	29, 157
BanI	GGYRCC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	37, 298
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	3 cut(s)	55, 121, 321
BcnI	CCSGG	2 cut(s)	163, 249
BfaI	CTAG	1 cut(s)	388
BisI	GCNGC	2 cut(s)	51, 312
BlsI	GCNGC	2 cut(s)	52, 313
Bme1390I	CCNGG	3 cut(s)	163, 249, 261
BmgT120I	GGNCC	2 cut(s)	245, 343
BmiI	GGNNCC	4 cut(s)	247, 258, 272, 345
BmrFI	CCNGG	3 cut(s)	163, 249, 261
BmsI	GCATC	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	163, 249
BsaJI	CCNNGG	2 cut(s)	135, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 293
Bse1I	ACTGG	3 cut(s)	19, 224, 258
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	135, 247
BseGI	GGATG	2 cut(s)	192, 362
BseLI	CCNNNNNNNGG	2 cut(s)	253, 293
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	19, 224, 258
BseXI	GCAGC	2 cut(s)	37, 298
BshFI	GGCC	3 cut(s)	29, 246, 344
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	162, 249
BslI	CCNNNNNNNGG	2 cut(s)	253, 293
BsnI	GGCC	3 cut(s)	29, 246, 344
Bsp143I	GATC	4 cut(s)	55, 121, 280, 321
BspACI	CCGC	2 cut(s)	83, 274
BspANI	GGCC	3 cut(s)	29, 246, 344
BspLI	GGNNCC	4 cut(s)	247, 258, 272, 345
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	19, 224, 258
BssECI	CCNNGG	2 cut(s)	135, 247
BssMI	GATC	4 cut(s)	55, 121, 280, 321
Bst2UI	CCWGG	1 cut(s)	261
Bst6I	CTCTTC	3 cut(s)	143, 177, 222
BstC8I	GCNNGC	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	192, 362
BstKTI	GATC	4 cut(s)	58, 124, 283, 324
BstMBI	GATC	4 cut(s)	55, 121, 280, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 59, 308
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	3 cut(s)	161, 247, 259
BstV1I	GCAGC	2 cut(s)	37, 298
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	29, 246, 344
BtsCI	GGATG	2 cut(s)	192, 362
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	245, 343
CsiI	ACCWGGT	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	2 cut(s)	125, 332
CviJI	RGCY	7 cut(s)	29, 50, 62, 119, 246, 344, 361
CviKI_1	RGCY	7 cut(s)	29, 50, 62, 119, 246, 344, 361
DpnI	GATC	4 cut(s)	57, 123, 282, 323
DpnII	GATC	4 cut(s)	55, 121, 280, 321
DraIII	CACNNNGTG	1 cut(s)	263
Eam1104I	CTCTTC	3 cut(s)	143, 177, 222
EarI	CTCTTC	3 cut(s)	143, 177, 222
EcoO109I	RGGNCCY	2 cut(s)	245, 343
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	128, 335
FaiI	YATR	7 cut(s)	12, 108, 126, 143, 320, 333, 357
FatI	CATG	2 cut(s)	124, 331
FbaI	TGATCA	3 cut(s)	55, 121, 321
Fnu4HI	GCNGC	2 cut(s)	51, 312
FokI	GGATG	2 cut(s)	179, 349
Fsp4HI	GCNGC	2 cut(s)	51, 312
FspBI	CTAG	1 cut(s)	388
GluI	GCNGC	2 cut(s)	51, 312
HaeIII	GGCC	3 cut(s)	29, 246, 344
HapII	CCGG	2 cut(s)	162, 249
Hin1II	CATG	2 cut(s)	128, 335
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	162, 249
HphI	GGTGA	2 cut(s)	29, 157
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	67, 77, 176
HpyCH4V	TGCA	3 cut(s)	45, 314, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 59, 308
Hsp92II	CATG	2 cut(s)	128, 335
Ksp22I	TGATCA	3 cut(s)	55, 121, 321
Kzo9I	GATC	4 cut(s)	55, 121, 280, 321
LpnPI	CCDG	7 cut(s)	175, 237, 239, 246, 262, 273, 360
Lsp1109I	GCAGC	2 cut(s)	37, 298
LweI	GCATC	1 cut(s)	70
MabI	ACCWGGT	1 cut(s)	259
MaeI	CTAG	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	17, 112
MalI	GATC	4 cut(s)	57, 123, 282, 323
MboI	GATC	4 cut(s)	55, 121, 280, 321
MboII	GAAGA	4 cut(s)	160, 164, 209, 275
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	33, 102
MnlI	CCTC	7 cut(s)	19, 130, 180, 217, 236, 334, 377
MslI	CAYNNNNRTG	2 cut(s)	15, 129
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	2 cut(s)	162, 249
MspR9I	CCNGG	3 cut(s)	163, 249, 261
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	47, 59, 308
NciI	CCSGG	2 cut(s)	163, 249
NdeII	GATC	4 cut(s)	55, 121, 280, 321
NlaIII	CATG	2 cut(s)	128, 335
NlaIV	GGNNCC	4 cut(s)	247, 258, 272, 345
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	52, 313
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	4 cut(s)	247, 258, 272, 345
PspPI	GGNCC	2 cut(s)	245, 343
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	15, 129
SatI	GCNGC	2 cut(s)	51, 312
Sau3AI	GATC	4 cut(s)	55, 121, 280, 321
Sau96I	GGNCC	2 cut(s)	245, 343
ScrFI	CCNGG	3 cut(s)	163, 249, 261
SetI	ASST	5 cut(s)	64, 121, 172, 209, 262
SexAI	ACCWGGT	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	15, 129
Sse9I	AATT	2 cut(s)	33, 102
SsiI	CCGC	2 cut(s)	83, 274
SspMI	CTAG	1 cut(s)	388
StyD4I	CCNGG	3 cut(s)	161, 247, 259
TasI	AATT	2 cut(s)	33, 102
TfiI	GAWTC	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	50, 311
Tsp45I	GTSAC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.