Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

13328962 .. 13331935

Gene Structure 2974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCTTTGTATTGTACAGAATGACTGGTCAGTTGTAAAACGAGGCTGGGATGCCCAAGTTCTCGGTGAAGCCCCCTATAAATTTAAGAATGTTGTTGAAGCTATCAAGACATTGAGAGCAGAACCAAATGCCAATGACCAGTATCTACCTCCTTTTGTTATTGTTGATGACAGTGGAAAGCCTGTGGGCCCAATAGTTGATGGTGATGCTGTTGTAACATTCAACTTCCGAGCAGATAGTATGGTCATGGCTGCTAAGGCATTTGAGTATGCAGATTTTGATAAATTCGATAGAGTTCGAGTTCCTAAAATCCACTATGCTGGTATGGTTCAGTATGATGGTGAGCTGAAGCTTCCAACCAGTTACCTTGTAGAACCCCCAGAGATTGATAGAACATCCGGGGAATATCTAACTTACAACGGTGTCCGTACTTTGCCTGCAGTTTGTGAGACTGTAAAATTTGGCCACGTTACTTTCTTCTGGAATGGGAATCACTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGCTTGCTGAAAATGCAAGGGATGCTATTCTAAGCAAGAAGTTTGAACAAGTACGTGTTAACCTACCCAATGGGGACATGGTGGGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGATGATTTTTGATGTGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATGTCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGAGAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCATTGCAATTGGAGGCCCCGGACTGGCACCTGGTGTTCGGTTCCGCAAGGATCTTCTGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCATCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

351

Amino Acids

38.48

Weight (kDa)

4.93

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	7 - 113	3.1e-21	BPG-independent PGAM N-terminus (iPGM_N)
Metalloenzyme	PF01676	123 - 336	1.3e-60	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	922
AciI	CCGC	1 cut(s)	940
AclWI	GGATC	1 cut(s)	954
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	5 cut(s)	80, 284, 458, 534, 768
AcuI	CTGAAG	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	3 cut(s)	15, 430, 642
AfiI	CCNNNNNNNGG	2 cut(s)	517, 919
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	6 cut(s)	98, 223, 562, 635, 887, 1040
AjnI	CCWGG	1 cut(s)	925
AluBI	AGCT	6 cut(s)	101, 346, 352, 592, 728, 785
AluI	AGCT	6 cut(s)	101, 346, 352, 592, 728, 785
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	954
AoxI	GGCC	5 cut(s)	187, 463, 693, 910, 1008
ApaI	GGGCCC	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	251, 716, 977
ApoI	RAATTY	5 cut(s)	80, 284, 458, 534, 768
AspS9I	GGNCC	4 cut(s)	187, 188, 911, 1009
AsuC2I	CCSGG	3 cut(s)	400, 829, 915
AsuHPI	GGTGA	5 cut(s)	77, 215, 353, 695, 823
BaeGI	GKGCMC	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	465
BanI	GGYRCC	1 cut(s)	922
BanII	GRGCYC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	238, 703, 964
BccI	CCATC	3 cut(s)	194, 332, 1036
BciT130I	CCWGG	1 cut(s)	927
BclI	TGATCA	3 cut(s)	721, 787, 987
BcnI	CCSGG	3 cut(s)	400, 829, 915
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	1054
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	3 cut(s)	252, 717, 978
BlsI	GCNGC	3 cut(s)	253, 718, 979
Bme1390I	CCNGG	4 cut(s)	400, 829, 915, 927
BmgT120I	GGNCC	4 cut(s)	187, 188, 911, 1009
BmiI	GGNNCC	5 cut(s)	189, 913, 924, 938, 1011
BmrFI	CCNGG	4 cut(s)	400, 829, 915, 927
BmsI	GCATC	4 cut(s)	40, 196, 491, 601
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	3 cut(s)	400, 829, 915
BsaAI	YACGTR	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	399, 913
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 919
Bse1I	ACTGG	6 cut(s)	29, 139, 360, 685, 890, 924
Bse3DI	GCAATG	1 cut(s)	897
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	2 cut(s)	399, 913
BseGI	GGATG	6 cut(s)	55, 395, 506, 616, 858, 1028
BseLI	CCNNNNNNNGG	2 cut(s)	517, 919
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	1 cut(s)	944
BseNI	ACTGG	6 cut(s)	29, 139, 360, 685, 890, 924
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	238, 703, 964
BseYI	CCCAGC	1 cut(s)	45
BshFI	GGCC	5 cut(s)	189, 465, 695, 912, 1010
BshNI	GGYRCC	1 cut(s)	922
BsiSI	CCGG	3 cut(s)	399, 828, 915
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	517, 919
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	5 cut(s)	189, 465, 695, 912, 1010
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	721, 787, 946, 987
BspACI	CCGC	1 cut(s)	940
BspANI	GGCC	5 cut(s)	189, 465, 695, 912, 1010
BspCNI	CTCAG	1 cut(s)	945
BspLI	GGNNCC	5 cut(s)	189, 913, 924, 938, 1011
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	954
BspT107I	GGYRCC	1 cut(s)	922
BsrDI	GCAATG	1 cut(s)	897
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	6 cut(s)	29, 139, 360, 685, 890, 924
BssECI	CCNNGG	2 cut(s)	399, 913
BssMI	GATC	4 cut(s)	721, 787, 946, 987
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	3 cut(s)	173, 422, 454
Bst6I	CTCTTC	4 cut(s)	809, 842, 843, 888
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	3 cut(s)	438, 594, 709
BstDEI	CTNAG	3 cut(s)	255, 620, 953
BstF5I	GGATG	6 cut(s)	55, 395, 506, 616, 858, 1028
BstKTI	GATC	4 cut(s)	724, 790, 949, 990
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	4 cut(s)	721, 787, 946, 987
BstMWI	GCNNNNNNNGC	6 cut(s)	257, 602, 611, 713, 725, 974
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	4 cut(s)	398, 827, 913, 925
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	238, 703, 964
BstX2I	RGATCY	1 cut(s)	946
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	946
BsuRI	GGCC	5 cut(s)	189, 465, 695, 912, 1010
BtsCI	GGATG	6 cut(s)	55, 395, 506, 616, 858, 1028
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	3 cut(s)	438, 594, 709
Cfr13I	GGNCC	4 cut(s)	187, 188, 911, 1009
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	3 cut(s)	14, 429, 641
CspCI	CAANNNNNGTGG	2 cut(s)	685, 720
CviAII	CATG	4 cut(s)	247, 667, 791, 998
CviQI	GTAC	3 cut(s)	14, 429, 641
DdeI	CTNAG	3 cut(s)	255, 620, 953
DpnI	GATC	4 cut(s)	723, 789, 948, 989
DpnII	GATC	4 cut(s)	721, 787, 946, 987
DraIII	CACNNNGTG	1 cut(s)	929
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	4 cut(s)	809, 842, 843, 888
EarI	CTCTTC	4 cut(s)	809, 842, 843, 888
Eco24I	GRGCYC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	368
EcoO109I	RGGNCCY	2 cut(s)	911, 1009
EcoRII	CCWGG	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	4 cut(s)	250, 670, 794, 1001
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	4 cut(s)	246, 666, 790, 997
FbaI	TGATCA	3 cut(s)	721, 787, 987
Fnu4HI	GCNGC	3 cut(s)	252, 717, 978
FokI	GGATG	6 cut(s)	62, 382, 513, 623, 845, 1015
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	252, 717, 978
FspBI	CTAG	1 cut(s)	1054
GluI	GCNGC	3 cut(s)	252, 717, 978
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	5 cut(s)	189, 465, 695, 912, 1010
HapII	CCGG	3 cut(s)	399, 828, 915
Hin1II	CATG	4 cut(s)	250, 670, 794, 1001
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	2 cut(s)	490, 552
HpaI	GTTAAC	1 cut(s)	649
HpaII	CCGG	3 cut(s)	399, 828, 915
HphI	GGTGA	5 cut(s)	77, 215, 353, 695, 823
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	2 cut(s)	230, 954
Hpy188III	TCNNGA	5 cut(s)	106, 481, 498, 733, 842
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	3 cut(s)	173, 422, 454
HpyCH4IV	ACGT	3 cut(s)	468, 564, 643
HpyCH4V	TGCA	7 cut(s)	272, 440, 605, 711, 902, 980, 997
HpyF10VI	GCNNNNNNNGC	6 cut(s)	257, 602, 611, 713, 725, 974
HpyF3I	CTNAG	3 cut(s)	255, 620, 953
HpySE526I	ACGT	3 cut(s)	468, 564, 643
Hsp92II	CATG	4 cut(s)	250, 670, 794, 1001
Ksp22I	TGATCA	3 cut(s)	721, 787, 987
KspAI	GTTAAC	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	721, 787, 946, 987
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	3 cut(s)	238, 703, 964
LweI	GCATC	4 cut(s)	40, 196, 491, 601
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	1 cut(s)	1054
MaeII	ACGT	3 cut(s)	468, 564, 643
MaeIII	GTNAC	5 cut(s)	214, 362, 469, 683, 778
MalI	GATC	4 cut(s)	723, 789, 948, 989
MboI	GATC	4 cut(s)	721, 787, 946, 987
MboII	GAAGA	6 cut(s)	469, 826, 830, 859, 875, 941
MfeI	CAATTG	2 cut(s)	699, 903
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	7 cut(s)	80, 284, 458, 534, 699, 768, 903
MluNI	TGGCCA	1 cut(s)	465
MmeI	TCCRAC	1 cut(s)	380
Mox20I	TGGCCA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	3 cut(s)	84, 507, 648
MslI	CAYNNNNRTG	2 cut(s)	681, 795
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	3 cut(s)	399, 828, 915
MspR9I	CCNGG	4 cut(s)	400, 829, 915, 927
MunI	CAATTG	2 cut(s)	699, 903
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	6 cut(s)	257, 602, 611, 713, 725, 974
NciI	CCSGG	3 cut(s)	400, 829, 915
NdeII	GATC	4 cut(s)	721, 787, 946, 987
NlaIII	CATG	4 cut(s)	250, 670, 794, 1001
NlaIV	GGNNCC	5 cut(s)	189, 913, 924, 938, 1011
NmuCI	GTSAC	1 cut(s)	683
PfeI	GAWTC	2 cut(s)	490, 552
PkrI	GCNGC	3 cut(s)	253, 718, 979
Ppu21I	YACGTR	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	925
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	5 cut(s)	189, 913, 924, 938, 1011
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	4 cut(s)	187, 188, 911, 1009
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	946
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	3 cut(s)	15, 430, 642
RsaNI	GTAC	3 cut(s)	14, 429, 641
RseI	CAYNNNNRTG	2 cut(s)	681, 795
SaqAI	TTAA	3 cut(s)	84, 507, 648
SatI	GCNGC	3 cut(s)	252, 717, 978
Sau3AI	GATC	4 cut(s)	721, 787, 946, 987
Sau96I	GGNCC	4 cut(s)	187, 188, 911, 1009
ScrFI	CCNGG	4 cut(s)	400, 829, 915, 927
SduI	GDGCHC	1 cut(s)	191
SexAI	ACCWGGT	1 cut(s)	925
SfaNI	GCATC	4 cut(s)	40, 196, 491, 601
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	681, 795
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	7 cut(s)	80, 284, 458, 534, 699, 768, 903
SsiI	CCGC	1 cut(s)	940
SspMI	CTAG	1 cut(s)	1054
StyD4I	CCNGG	4 cut(s)	398, 827, 913, 925
TaaI	ACNGT	3 cut(s)	173, 422, 454
TaiI	ACGT	3 cut(s)	471, 567, 646
TaqI	TCGA	3 cut(s)	288, 298, 801
TasI	AATT	7 cut(s)	80, 284, 458, 534, 699, 768, 903
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	490, 552
Tru1I	TTAA	3 cut(s)	84, 507, 648
Tru9I	TTAA	3 cut(s)	84, 507, 648
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	3 cut(s)	251, 716, 977
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	5 cut(s)	80, 284, 458, 534, 768
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XspI	CTAG	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.