Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Forward (+)

55259983 .. 55260919

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGTGGAAAGGTTTCTGCATAGTGGACCAAATTGGGTTTTGAGAAAATCTGCGGCAATGCTAGCAGGGTATGTTCTCATTGCTATTGGAGGCCCCAGACTGGCACCTGGTGTTCGGTTCTGCAAGGATCTTCCGCGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCTTGCTGACTATGAGCCATCCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

78

Amino Acids

8.39

Weight (kDa)

6.71

Isoelectric Point (pI)

19.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccII	CGCG	1 cut(s)	136
AciI	CCGC	2 cut(s)	53, 134
AclWI	GGATC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	100, 140
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	106
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	2 cut(s)	91, 189
ApeKI	GCWGC	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	26, 92, 190
AsuNHI	GCTAGC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	108
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	2 cut(s)	62, 235
BisI	GCNGC	2 cut(s)	54, 159
BlsI	GCNGC	2 cut(s)	55, 160
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	26, 92, 190
BmiI	GGNNCC	2 cut(s)	94, 105
BmrFI	CCNGG	1 cut(s)	108
BmtI	GCTAGC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 140
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	2 cut(s)	63, 78
BseBI	CCWGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	100, 140
BseMI	GCAATG	2 cut(s)	63, 78
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	93, 191
BshNI	GGYRCC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	100, 140
BsnI	GGCC	2 cut(s)	93, 191
Bsp143I	GATC	2 cut(s)	127, 168
BspACI	CCGC	2 cut(s)	53, 134
BspANI	GGCC	2 cut(s)	93, 191
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	94, 105
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	2 cut(s)	63, 78
BsrI	ACTGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	127, 168
Bst2UI	CCWGG	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	130, 171
BstMBI	GATC	2 cut(s)	127, 168
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 155
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	93, 191
BtsCI	GGATG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	63
Cfr13I	GGNCC	3 cut(s)	26, 92, 190
CsiI	ACCWGGT	1 cut(s)	106
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	3 cut(s)	93, 191, 208
CviKI_1	RGCY	3 cut(s)	93, 191, 208
DpnI	GATC	2 cut(s)	129, 170
DpnII	GATC	2 cut(s)	127, 168
DraIII	CACNNNGTG	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	26
EcoO109I	RGGNCCY	2 cut(s)	92, 190
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	182
FaiI	YATR	5 cut(s)	21, 72, 167, 180, 204
FatI	CATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	54, 159
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	54, 159
FspBI	CTAG	2 cut(s)	62, 235
GluI	GCNGC	2 cut(s)	54, 159
HaeIII	GGCC	2 cut(s)	93, 191
Hin1II	CATG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	19, 123, 161, 178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 155
Hsp92II	CATG	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	127, 168
LpnPI	CCDG	5 cut(s)	51, 86, 93, 109, 120
Lsp1109I	GCAGC	1 cut(s)	145
MabI	ACCWGGT	1 cut(s)	106
MaeI	CTAG	2 cut(s)	62, 235
MalI	GATC	2 cut(s)	129, 170
MboI	GATC	2 cut(s)	127, 168
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	3 cut(s)	83, 181, 224
MroXI	GAANNNNTTC	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	62, 155
NdeII	GATC	2 cut(s)	127, 168
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	2 cut(s)	94, 105
PdmI	GAANNNNTTC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	55, 160
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	94, 105
PspPI	GGNCC	3 cut(s)	26, 92, 190
PsuI	RGATCY	1 cut(s)	127
SatI	GCNGC	2 cut(s)	54, 159
Sau3AI	GATC	2 cut(s)	127, 168
Sau96I	GGNCC	3 cut(s)	26, 92, 190
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	2 cut(s)	14, 109
SexAI	ACCWGGT	1 cut(s)	106
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	53, 134
SspMI	CTAG	2 cut(s)	62, 235
StyD4I	CCNGG	1 cut(s)	106
TasI	AATT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	2 cut(s)	62, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.