Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Reverse (-)

77041407 .. 77042795

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTCATGGCTGCTAAGGCATTTGAGTATGCAGATTTTGATAAATTCGATAGAGTTCGAGTTCCTAAAATCTGTTATGCTGGTATGCTTCAGTATGATGGTGAGCTGAAGCTTCCAACCCGTTACCTTGTAGAACCCCCAGAGATTGATAGAACATCCGGGGAATATCTAACTTACAACGGTGTCCATACTTTTGCTTGCAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTAACCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGGGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTATTACAGCTGATCATGGTAATGCCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCGCACTCTTCAACCAGTTCCCGTTGCTATTGGAGGCCCCGGACTAGCACCTGGTGTTCGGTTCCGCAAGGATCTTCCAAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGACCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCGTTCCTCATTGAAGTTGTTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

236

Amino Acids

25.67

Weight (kDa)

5.44

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	68 - 221	2.6e-43	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	3 cut(s)	404, 532, 595
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	2 cut(s)	44, 423
AcuI	CTGAAG	2 cut(s)	74, 128
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	217, 290, 542, 695
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	4 cut(s)	106, 112, 383, 440
AluI	AGCT	4 cut(s)	106, 112, 383, 440
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	3 cut(s)	348, 565, 663
ApeKI	GCWGC	3 cut(s)	11, 371, 632
ApoI	RAATTY	2 cut(s)	44, 423
AspS9I	GGNCC	2 cut(s)	566, 664
AsuC2I	CCSGG	3 cut(s)	160, 484, 570
AsuHPI	GGTGA	3 cut(s)	113, 350, 478
BbvI	GCAGC	2 cut(s)	358, 619
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	667
BciT130I	CCWGG	1 cut(s)	582
BclI	TGATCA	2 cut(s)	376, 442
BcnI	CCSGG	3 cut(s)	160, 484, 570
BfaI	CTAG	2 cut(s)	575, 709
BisI	GCNGC	3 cut(s)	12, 372, 633
BlsI	GCNGC	3 cut(s)	13, 373, 634
Bme1390I	CCNGG	4 cut(s)	160, 484, 570, 582
BmgT120I	GGNCC	2 cut(s)	566, 664
BmiI	GGNNCC	3 cut(s)	568, 593, 666
BmrFI	CCNGG	4 cut(s)	160, 484, 570, 582
BmsI	GCATC	2 cut(s)	256, 391
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	3 cut(s)	160, 484, 570
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	159, 456, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	340, 545
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	3 cut(s)	159, 456, 568
BseGI	GGATG	3 cut(s)	155, 271, 513
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	340, 545
BseXI	GCAGC	2 cut(s)	358, 619
BshFI	GGCC	3 cut(s)	350, 567, 665
BsiSI	CCGG	3 cut(s)	159, 483, 570
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	3 cut(s)	350, 567, 665
Bsp143I	GATC	3 cut(s)	376, 442, 601
BspACI	CCGC	3 cut(s)	404, 532, 595
BspANI	GGCC	3 cut(s)	350, 567, 665
BspLI	GGNNCC	3 cut(s)	568, 593, 666
BspPI	GGATC	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	340, 545
BssECI	CCNNGG	3 cut(s)	159, 456, 568
BssMI	GATC	3 cut(s)	376, 442, 601
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	3 cut(s)	464, 498, 543
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	199, 364
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	155, 271, 513
BstKTI	GATC	3 cut(s)	379, 445, 604
BstMBI	GATC	3 cut(s)	376, 442, 601
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 257, 266, 368, 380, 629
BstNI	CCWGG	1 cut(s)	582
BstSCI	CCNGG	4 cut(s)	158, 482, 568, 580
BstV1I	GCAGC	2 cut(s)	358, 619
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	3 cut(s)	350, 567, 665
BtsCI	GGATG	3 cut(s)	155, 271, 513
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	199, 364
Cfr13I	GGNCC	2 cut(s)	566, 664
CsiI	ACCWGGT	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	296
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	4 cut(s)	7, 322, 446, 653
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	378, 444, 603
DpnII	GATC	3 cut(s)	376, 442, 601
DraIII	CACNNNGTG	1 cut(s)	584
Eam1104I	CTCTTC	3 cut(s)	464, 498, 543
EarI	CTCTTC	3 cut(s)	464, 498, 543
Eco57I	CTGAAG	2 cut(s)	74, 128
EcoO109I	RGGNCCY	2 cut(s)	566, 664
EcoRII	CCWGG	1 cut(s)	580
FaeI	CATG	4 cut(s)	10, 325, 449, 656
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	4 cut(s)	6, 321, 445, 652
FauI	CCCGC	1 cut(s)	539
FbaI	TGATCA	2 cut(s)	376, 442
Fnu4HI	GCNGC	3 cut(s)	12, 372, 633
FokI	GGATG	3 cut(s)	142, 278, 500
Fsp4HI	GCNGC	3 cut(s)	12, 372, 633
FspBI	CTAG	2 cut(s)	575, 709
GluI	GCNGC	3 cut(s)	12, 372, 633
HaeIII	GGCC	3 cut(s)	350, 567, 665
HapII	CCGG	3 cut(s)	159, 483, 570
Hin1II	CATG	4 cut(s)	10, 325, 449, 656
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	207, 394
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	3 cut(s)	159, 483, 570
HphI	GGTGA	3 cut(s)	113, 350, 478
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188III	TCNNGA	3 cut(s)	388, 398, 497
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	219, 298
HpyCH4V	TGCA	5 cut(s)	32, 201, 366, 635, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 257, 266, 368, 380, 629
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	2 cut(s)	219, 298
Hsp92II	CATG	4 cut(s)	10, 325, 449, 656
Ksp22I	TGATCA	2 cut(s)	376, 442
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	376, 442, 601
Lsp1109I	GCAGC	2 cut(s)	358, 619
LweI	GCATC	2 cut(s)	256, 391
MabI	ACCWGGT	1 cut(s)	580
MaeI	CTAG	2 cut(s)	575, 709
MaeII	ACGT	2 cut(s)	219, 298
MaeIII	GTNAC	2 cut(s)	122, 338
MalI	GATC	3 cut(s)	378, 444, 603
MboI	GATC	3 cut(s)	376, 442, 601
MboII	GAAGA	4 cut(s)	481, 485, 530, 596
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	3 cut(s)	44, 354, 423
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	340, 451, 501, 538, 557, 655, 698
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	336, 450
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	3 cut(s)	159, 483, 570
MspR9I	CCNGG	4 cut(s)	160, 484, 570, 582
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	6 cut(s)	17, 257, 266, 368, 380, 629
NciI	CCSGG	3 cut(s)	160, 484, 570
NdeII	GATC	3 cut(s)	376, 442, 601
NlaIII	CATG	4 cut(s)	10, 325, 449, 656
NlaIV	GGNNCC	3 cut(s)	568, 593, 666
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	207, 394
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	13, 373, 634
Ppu21I	YACGTR	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	3 cut(s)	568, 593, 666
PspPI	GGNCC	2 cut(s)	566, 664
PsuI	RGATCY	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	2 cut(s)	336, 450
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	12, 372, 633
Sau3AI	GATC	3 cut(s)	376, 442, 601
Sau96I	GGNCC	2 cut(s)	566, 664
ScrFI	CCNGG	4 cut(s)	160, 484, 570, 582
SexAI	ACCWGGT	1 cut(s)	580
SfaNI	GCATC	2 cut(s)	256, 391
SmiMI	CAYNNNNRTG	2 cut(s)	336, 450
Sse9I	AATT	3 cut(s)	44, 354, 423
SsiI	CCGC	3 cut(s)	404, 532, 595
SspMI	CTAG	2 cut(s)	575, 709
StyD4I	CCNGG	4 cut(s)	158, 482, 568, 580
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	222, 301
TaqI	TCGA	2 cut(s)	48, 58
TasI	AATT	3 cut(s)	44, 354, 423
TfiI	GAWTC	2 cut(s)	207, 394
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	11, 371, 632
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	614
XapI	RAATTY	2 cut(s)	44, 423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XspI	CTAG	2 cut(s)	575, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.