Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001570

Physical Location & Seq

Genomic Coordinates Forward (+)

28014789 .. 28020886

Gene Structure 6098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG235100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTGTAGCTCAAGTATAATTGTAGCCGCTATCTTTGTTTTCTTTTTTGGTCCCCCATTTGCAGTAGCACCTGGATTAGAATTCCAGAATGACTGGTCAGTTGTAAAACGAGGATGGGATACCCAAGTTCTCGGTGAAGCCCCCTATAAATTTAAGAATGCTGTTGAAGCTATCAAGACATTGAGAGCAGAACCAAATGCCAATGACCATGGAAAGCCTGTGGGCCCAATAGTTGATGGTGATGCTGTTGTAACATTCAACTTCCGAGCAGATCGTATGGTCATGGCTGCTGAGGCATTTGAGTATGCAGATTTTGATAAATTCGATAGAGTTCAAGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGACCAAGAAGGTTGAACAGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCAGGGTAATGCCGAGGATATGGTTCTCGTTGCTATTGGAGGCCCCGGACTGGCACTTGGTGTTCGGTTCTGCAAGGATCTTCCAAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTGCTGACTATGAGCCGTCCCTCATTGAAGTTATTGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

230

Amino Acids

24.89

Weight (kDa)

4.5

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	30 - 111	2e-12	BPG-independent PGAM N-terminus (iPGM_N)
Metalloenzyme	PF01676	151 - 215	2.8e-08	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09780 AT3G08590 AT3G08590
fragaria_vesca	FvH4_6g09180 FvH4_6g09180 FvH4_6g09180
malus_domestica	MD04G1180100.v1.1 MD12G1195300.v1.1
prunus_persica	Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1 Prupe.6G300000_v2.0.a1
pyrus_communis	pycom04g15930 pycom12g18160
rosa_chinensis	RchiOBHm_Chr2g0154971 RchiOBHm_Chr2g0154981 RchiOBHm_Chr3g0459381 RchiOBHm_Chr3g0467071 RchiOBHm_Chr5g0071081 RchiOBHm_Chr6g0301401
rosa_laevigata	RLG00000020806 RLG00000025085 RLG00000033543
rosa_multiflora	Rmu_sc0000240.1_g000005 Rmu_sc0001304.1_g000020 Rmu_sc0004018.1_g000005 Rmu_sc0007705.1_g000010 Rmu_sc0014417.1_g000008 Rmu_ssc0000065.1_g000007
rosa_roxburghii	Rroxscaffold_2G00122270 Rroxscaffold_3G00253790 Rroxscaffold_6G00420200
rosa_rugosa	Rorug03G0036100 Rorug03G0036200 Rorug03G0036200 Rorug05G0003600 Rorug05G0003600 Rorug05G0003700
rosa_samantha	Rh3AG094000 Rh3AG133200 Rh3BG154300 Rh3CG098200 Rh3CG308400 Rh3DG097700 Rh4CG280400 Rh5BG093900 Rh5BG235100 Rh6AG418000 Rh6CG431600
rosa_wichuraiana	Rw3G008090 Rw6G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AciI	CCGC	2 cut(s)	27, 467
AclWI	GGATC	1 cut(s)	591
AcsI	RAATTY	5 cut(s)	80, 149, 320, 348, 486
AdeI	CACNNNGTG	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	556, 596
AgsI	TTSAA	6 cut(s)	167, 259, 335, 376, 449, 677
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	3 cut(s)	9, 170, 503
AluI	AGCT	3 cut(s)	9, 170, 503
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	3 cut(s)	223, 547, 645
ApaI	GGGCCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	287, 614
ApoI	RAATTY	5 cut(s)	80, 149, 320, 348, 486
AspS9I	GGNCC	5 cut(s)	50, 223, 224, 548, 646
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	146, 251
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	227
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BanII	GRGCYC	1 cut(s)	227
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	274, 601
BccI	CCATC	2 cut(s)	108, 230
BceAI	ACGGC	1 cut(s)	649
BciT130I	CCWGG	1 cut(s)	72
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	2 cut(s)	505, 624
BcnI	CCSGG	1 cut(s)	552
BfaI	CTAG	1 cut(s)	691
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	27, 288, 615
BlsI	GCNGC	3 cut(s)	28, 289, 616
Bme1390I	CCNGG	2 cut(s)	72, 552
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	5 cut(s)	50, 223, 224, 548, 646
BmiI	GGNNCC	4 cut(s)	52, 225, 550, 648
BmrFI	CCNGG	2 cut(s)	72, 552
BmsI	GCATC	3 cut(s)	232, 415, 454
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	208, 519, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 596
Bse1I	ACTGG	2 cut(s)	98, 561
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	208, 519, 550
BseGI	GGATG	2 cut(s)	119, 430
BseLI	CCNNNNNNNGG	2 cut(s)	556, 596
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	98, 561
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	274, 601
BshFI	GGCC	3 cut(s)	225, 549, 647
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	2 cut(s)	36, 652
BslI	CCNNNNNNNGG	2 cut(s)	556, 596
BsmFI	GGGAC	2 cut(s)	36, 652
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	225, 549, 647
Bsp120I	GGGCCC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	4 cut(s)	271, 505, 583, 624
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	2 cut(s)	27, 467
BspANI	GGCC	3 cut(s)	225, 549, 647
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	4 cut(s)	52, 225, 550, 648
BspPI	GGATC	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	98, 561
BssECI	CCNNGG	3 cut(s)	208, 519, 550
BssMI	GATC	4 cut(s)	271, 505, 583, 624
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	119, 430
BstKTI	GATC	4 cut(s)	274, 508, 586, 627
BstMBI	GATC	4 cut(s)	271, 505, 583, 624
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 293, 416, 425, 611
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	70, 550
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	274, 601
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	225, 549, 647
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	119, 430
Cfr13I	GGNCC	5 cut(s)	50, 223, 224, 548, 646
CviAII	CATG	3 cut(s)	209, 283, 635
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	273, 507, 585, 626
DpnII	GATC	4 cut(s)	271, 505, 583, 624
DraIII	CACNNNGTG	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	2 cut(s)	548, 646
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	212, 286, 638
FaqI	GGGAC	2 cut(s)	36, 652
FatI	CATG	3 cut(s)	208, 282, 634
FbaI	TGATCA	2 cut(s)	505, 624
Fnu4HI	GCNGC	3 cut(s)	27, 288, 615
FokI	GGATG	2 cut(s)	126, 437
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	27, 288, 615
FspBI	CTAG	1 cut(s)	691
GluI	GCNGC	3 cut(s)	27, 288, 615
HaeIII	GGCC	3 cut(s)	225, 549, 647
HapII	CCGG	1 cut(s)	552
Hin1II	CATG	3 cut(s)	212, 286, 638
HinfI	GANTC	2 cut(s)	366, 457
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	2 cut(s)	146, 251
Hpy188I	TCNGA	2 cut(s)	266, 435
Hpy188III	TCNNGA	4 cut(s)	85, 175, 335, 461
HpyAV	CCTTC	2 cut(s)	388, 436
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	62, 308, 579, 617, 634
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 293, 416, 425, 611
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	212, 286, 638
Ksp22I	TGATCA	2 cut(s)	505, 624
Kzo9I	GATC	4 cut(s)	271, 505, 583, 624
Lsp1109I	GCAGC	2 cut(s)	274, 601
LweI	GCATC	3 cut(s)	232, 415, 454
MaeI	CTAG	1 cut(s)	691
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	250, 496
MalI	GATC	4 cut(s)	273, 507, 585, 626
MboI	GATC	4 cut(s)	271, 505, 583, 624
MboII	GAAGA	1 cut(s)	578
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	6 cut(s)	18, 80, 149, 320, 348, 486
MnlI	CCTC	6 cut(s)	104, 286, 514, 539, 637, 680
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	72, 552
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	5 cut(s)	167, 293, 416, 425, 611
NciI	CCSGG	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	4 cut(s)	271, 505, 583, 624
NlaIII	CATG	3 cut(s)	212, 286, 638
NlaIV	GGNNCC	4 cut(s)	52, 225, 550, 648
NmeAIII	GCCGAG	1 cut(s)	544
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	366, 457
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	3 cut(s)	28, 289, 616
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	4 cut(s)	52, 225, 550, 648
PspOMI	GGGCCC	1 cut(s)	223
PspPI	GGNCC	5 cut(s)	50, 223, 224, 548, 646
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	27, 288, 615
Sau3AI	GATC	4 cut(s)	271, 505, 583, 624
Sau96I	GGNCC	5 cut(s)	50, 223, 224, 548, 646
ScrFI	CCNGG	2 cut(s)	72, 552
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	6 cut(s)	11, 73, 172, 381, 447, 505
SfaNI	GCATC	3 cut(s)	232, 415, 454
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	6 cut(s)	18, 80, 149, 320, 348, 486
SsiI	CCGC	2 cut(s)	27, 467
SspMI	CTAG	1 cut(s)	691
StyD4I	CCNGG	2 cut(s)	70, 550
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	324
TasI	AATT	6 cut(s)	18, 80, 149, 320, 348, 486
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	366, 457
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	2 cut(s)	287, 614
TspDTI	ATGAA	1 cut(s)	407
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	5 cut(s)	80, 149, 320, 348, 486
XspI	CTAG	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.