Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023771

Physical Location & Seq

Genomic Coordinates Forward (+)

16916330 .. 16917217

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGAAACTTGGCAGAGATGATGAATTGATTGTGGACGAGTCTTCGTTGAAATCCTTCTCTCTTCTTTGCCAAGGTAACTTCAGTTACGTCTGTCTCATGAAGGACTCCAAATCTCGACGTTGCGCAAAGAAGTCATCGCCGATGCAGCACAAACAGATTCTCGAGAAGGAACTCCGGATCATGCATCGTTTCCGTGACCATCATCGCATCGTCCAAGCCTCAAACAAGTTTCACATACAAATCAAACCCTCTGAATGCTACATCTATATGGAGTACGCGTCCGAAGGTAATCTCCATAAGTTTATATCTGGTTTGGAAGGAAAATCCGTACCAGAGTCTTTGGTCCAACGCACGGCTCGTATGATCCTAGAAGGACTTGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCAGGCCATCCAACGTTCTCCTCTTCCCGTCCAAGACTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGCTCATCCAAGGAACCTGATTCCGATTATGGTTGGATGTACTTTGGTACGGCGCCTAAGTACATGCCAATAGAGTCTTTTGGGCCTAAGGGAGTGATCATCGATCCGAGCCTTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCCAGGACTACTTTGACGAATATTACGAATGGAATCTGCGTCGTCATATCTCTCCGGAGGCTAGAGATTTCTTAAGCCGGTGCAGTAACATGCATCCACACAGGCCCACCGCGGCATATCTCTTGAACCATCCTTTCATTACTCAAATACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

295

Amino Acids

33.91

Weight (kDa)

6.89

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 266	3.1e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	38 - 225	9.9e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40500 AT2G40560 AT2G40580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	544
AccII	CGCG	2 cut(s)	281, 770
AccIII	TCCGGA	2 cut(s)	177, 712
AciI	CCGC	2 cut(s)	768, 770
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	4 cut(s)	188, 361, 480, 590
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	5 cut(s)	278, 333, 533, 541, 554
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflII	CTTAAG	1 cut(s)	730
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	52, 784
AjnI	CCWGG	2 cut(s)	457, 660
AjuI	GAANNNNNNNTTGG	1 cut(s)	863
AluBI	AGCT	3 cut(s)	481, 650, 874
AluI	AGCT	3 cut(s)	481, 650, 874
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	4 cut(s)	188, 361, 480, 590
Ama87I	CYCGRG	1 cut(s)	164
Aor13HI	TCCGGA	2 cut(s)	177, 712
AoxI	GGCC	4 cut(s)	422, 575, 761, 882
ApeKI	GCWGC	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	128, 547
AspS9I	GGNCC	3 cut(s)	346, 575, 762
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	544
BbsI	GAAGAC	2 cut(s)	36, 834
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	4 cut(s)	210, 433, 795, 820
BceAI	ACGGC	3 cut(s)	372, 451, 558
BciT130I	CCWGG	2 cut(s)	459, 662
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	4 cut(s)	371, 620, 720, 846
BfoI	RGCGCY	1 cut(s)	548
BfrI	CTTAAG	1 cut(s)	730
BisI	GCNGC	2 cut(s)	149, 771
BlsI	GCNGC	2 cut(s)	150, 772
Bme1390I	CCNGG	2 cut(s)	459, 662
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	3 cut(s)	346, 575, 762
BmiI	GGNNCC	2 cut(s)	507, 546
BmrFI	CCNGG	2 cut(s)	459, 662
BmsI	GCATC	5 cut(s)	135, 196, 219, 630, 760
BpiI	GAAGAC	2 cut(s)	36, 834
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	401, 461
Bsa29I	ATCGAT	1 cut(s)	594
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	5 cut(s)	73, 397, 467, 501, 768
BsaWI	WCCGGW	2 cut(s)	177, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	735
Bse21I	CCTNAGG	1 cut(s)	579
BseAI	TCCGGA	2 cut(s)	177, 712
BseBI	CCWGG	2 cut(s)	459, 662
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	5 cut(s)	73, 397, 467, 501, 768
BseGI	GGATG	5 cut(s)	425, 497, 534, 751, 787
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	760
Bsh1236I	CGCG	2 cut(s)	281, 770
BshFI	GGCC	4 cut(s)	424, 577, 763, 884
BshNI	GGYRCC	1 cut(s)	544
BshVI	ATCGAT	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	3 cut(s)	178, 713, 736
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	424, 577, 763, 884
BsoBI	CYCGRG	1 cut(s)	164
Bsp13I	TCCGGA	2 cut(s)	177, 712
Bsp143I	GATC	5 cut(s)	180, 366, 472, 588, 595
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	2 cut(s)	768, 770
BspANI	GGCC	4 cut(s)	424, 577, 763, 884
BspCNI	CTCAG	1 cut(s)	432
BspDI	ATCGAT	1 cut(s)	594
BspEI	TCCGGA	2 cut(s)	177, 712
BspFNI	CGCG	2 cut(s)	281, 770
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	507, 546
BspPI	GGATC	4 cut(s)	188, 361, 480, 590
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	544
BspTI	CTTAAG	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	735
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	5 cut(s)	73, 397, 467, 501, 768
BssMI	GATC	5 cut(s)	180, 366, 472, 588, 595
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	3 cut(s)	73, 397, 501
Bst2UI	CCWGG	2 cut(s)	459, 662
Bst6I	CTCTTC	3 cut(s)	69, 393, 446
BstACI	GRCGYC	1 cut(s)	545
BstAFI	CTTAAG	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	419, 549, 579
BstDSI	CCRYGG	3 cut(s)	397, 467, 768
BstF5I	GGATG	5 cut(s)	425, 497, 534, 751, 787
BstFNI	CGCG	2 cut(s)	281, 770
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	128, 547
BstKTI	GATC	5 cut(s)	183, 369, 475, 591, 598
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	5 cut(s)	180, 366, 472, 588, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	2 cut(s)	459, 662
BstNSI	RCATGY	2 cut(s)	559, 751
BstSCI	CCNGG	2 cut(s)	457, 660
BstUI	CGCG	2 cut(s)	281, 770
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	36, 834
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	594
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	4 cut(s)	424, 577, 763, 884
BsuTUI	ATCGAT	1 cut(s)	594
BtgI	CCRYGG	3 cut(s)	397, 467, 768
BtgZI	GCGATG	3 cut(s)	123, 191, 798
BtsCI	GGATG	5 cut(s)	425, 497, 534, 751, 787
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	483
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	2 cut(s)	128, 547
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	3 cut(s)	346, 575, 762
Cfr42I	CCGCGG	1 cut(s)	771
ClaI	ATCGAT	1 cut(s)	594
CseI	GACGC	2 cut(s)	270, 686
Csp6I	GTAC	5 cut(s)	277, 332, 532, 540, 553
CviAII	CATG	5 cut(s)	100, 184, 398, 556, 748
CviQI	GTAC	5 cut(s)	277, 332, 532, 540, 553
DdeI	CTNAG	3 cut(s)	419, 549, 579
DinI	GGCGCC	1 cut(s)	546
DpnI	GATC	5 cut(s)	182, 368, 474, 590, 597
DpnII	GATC	5 cut(s)	180, 366, 472, 588, 595
Eam1104I	CTCTTC	3 cut(s)	69, 393, 446
EarI	CTCTTC	3 cut(s)	69, 393, 446
Eco130I	CCWWGG	3 cut(s)	73, 397, 501
Eco32I	GATATC	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	457, 660
EcoRV	GATATC	1 cut(s)	843
EcoT14I	CCWWGG	3 cut(s)	73, 397, 501
EcoT22I	ATGCAT	2 cut(s)	189, 753
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
ErhI	CCWWGG	3 cut(s)	73, 397, 501
FaeI	CATG	5 cut(s)	103, 187, 401, 559, 751
FatI	CATG	5 cut(s)	99, 183, 397, 555, 747
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	2 cut(s)	149, 771
FokI	GGATG	5 cut(s)	412, 484, 541, 738, 774
Fsp4HI	GCNGC	2 cut(s)	149, 771
FspBI	CTAG	4 cut(s)	371, 620, 720, 846
FspI	TGCGCA	1 cut(s)	127
GlaI	GCGC	2 cut(s)	127, 546
GluI	GCNGC	2 cut(s)	149, 771
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	4 cut(s)	424, 577, 763, 884
HapII	CCGG	3 cut(s)	178, 713, 736
HgaI	GACGC	2 cut(s)	270, 686
HhaI	GCGC	2 cut(s)	128, 547
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	5 cut(s)	103, 187, 401, 559, 751
Hin6I	GCGC	2 cut(s)	126, 545
HinP1I	GCGC	2 cut(s)	126, 545
HindIII	AAGCTT	2 cut(s)	479, 872
HinfI	GANTC	9 cut(s)	41, 107, 160, 338, 454, 512, 566, 691, 856
HpaII	CCGG	3 cut(s)	178, 713, 736
Hpy166II	GTNNAC	2 cut(s)	37, 409
Hpy188I	TCNGA	4 cut(s)	256, 286, 517, 600
Hpy188III	TCNNGA	8 cut(s)	100, 117, 164, 166, 178, 713, 781, 868
Hpy8I	GTNNAC	2 cut(s)	37, 409
Hpy99I	CGWCG	2 cut(s)	123, 702
HpyAV	CCTTC	6 cut(s)	67, 97, 163, 281, 314, 368
HpyCH4IV	ACGT	4 cut(s)	90, 121, 405, 432
HpyCH4V	TGCA	5 cut(s)	148, 187, 414, 741, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	3 cut(s)	419, 549, 579
HpySE526I	ACGT	4 cut(s)	90, 121, 405, 432
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	5 cut(s)	103, 187, 401, 559, 751
HspAI	GCGC	2 cut(s)	126, 545
KasI	GGCGCC	1 cut(s)	544
Kpn2I	TCCGGA	2 cut(s)	177, 712
Ksp22I	TGATCA	1 cut(s)	588
KspI	CCGCGG	1 cut(s)	771
Kzo9I	GATC	5 cut(s)	180, 366, 472, 588, 595
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	5 cut(s)	135, 196, 219, 630, 760
MaeI	CTAG	4 cut(s)	371, 620, 720, 846
MaeII	ACGT	4 cut(s)	90, 121, 405, 432
MaeIII	GTNAC	5 cut(s)	77, 86, 197, 401, 743
MalI	GATC	5 cut(s)	182, 368, 474, 590, 597
MboI	GATC	5 cut(s)	180, 366, 472, 588, 595
MboII	GAAGA	5 cut(s)	36, 56, 380, 433, 839
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	1 cut(s)	26
MluI	ACGCGT	1 cut(s)	279
Mly113I	GGCGCC	1 cut(s)	545
MlyI	GAGTC	5 cut(s)	50, 101, 347, 448, 575
MmeI	TCCRAC	3 cut(s)	373, 453, 506
MnlI	CCTC	5 cut(s)	232, 262, 376, 449, 709
Mph1103I	ATGCAT	2 cut(s)	189, 753
MroI	TCCGGA	2 cut(s)	177, 712
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	731
MslI	CAYNNNNRTG	2 cut(s)	269, 396
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	730
MspI	CCGG	3 cut(s)	178, 713, 736
MspR9I	CCNGG	2 cut(s)	459, 662
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	2 cut(s)	459, 662
MvnI	CGCG	2 cut(s)	281, 770
MwoI	GCNNNNNNNGC	1 cut(s)	148
NarI	GGCGCC	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	5 cut(s)	180, 366, 472, 588, 595
NlaIII	CATG	5 cut(s)	103, 187, 401, 559, 751
NlaIV	GGNNCC	2 cut(s)	507, 546
NmuCI	GTSAC	1 cut(s)	197
NsbI	TGCGCA	1 cut(s)	127
NsiI	ATGCAT	2 cut(s)	189, 753
NspI	RCATGY	2 cut(s)	559, 751
PaeR7I	CTCGAG	1 cut(s)	164
PagI	TCATGA	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	2 cut(s)	358, 681
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	160, 512, 691, 856
PfoI	TCCNGGA	2 cut(s)	457, 660
PkrI	GCNGC	2 cut(s)	150, 772
PleI	GAGTC	5 cut(s)	49, 101, 346, 448, 574
PluTI	GGCGCC	1 cut(s)	548
PpsI	GAGTC	5 cut(s)	49, 101, 346, 448, 574
Psp1406I	AACGTT	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	457, 660
PspGI	CCWGG	2 cut(s)	457, 660
PspN4I	GGNNCC	2 cut(s)	507, 546
PspPI	GGNCC	3 cut(s)	346, 575, 762
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	5 cut(s)	278, 333, 533, 541, 554
RsaNI	GTAC	5 cut(s)	277, 332, 532, 540, 553
RseI	CAYNNNNRTG	2 cut(s)	269, 396
SacII	CCGCGG	1 cut(s)	771
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	731
SatI	GCNGC	2 cut(s)	149, 771
Sau3AI	GATC	5 cut(s)	180, 366, 472, 588, 595
Sau96I	GGNCC	3 cut(s)	346, 575, 762
SchI	GAGTC	5 cut(s)	50, 101, 347, 448, 575
ScrFI	CCNGG	2 cut(s)	459, 662
SfaNI	GCATC	5 cut(s)	135, 196, 219, 630, 760
SfoI	GGCGCC	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	164
Sfr303I	CCGCGG	1 cut(s)	771
SgrBI	CCGCGG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	269, 396
SmlI	CTYRAG	4 cut(s)	164, 380, 476, 730
SmoI	CTYRAG	4 cut(s)	164, 380, 476, 730
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	768, 770
SspDI	GGCGCC	1 cut(s)	544
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	4 cut(s)	371, 620, 720, 846
StyD4I	CCNGG	2 cut(s)	457, 660
StyI	CCWWGG	3 cut(s)	73, 397, 501
TaiI	ACGT	4 cut(s)	93, 124, 408, 435
TaqI	TCGA	4 cut(s)	118, 165, 594, 869
TasI	AATT	1 cut(s)	26
TatI	WGTACW	2 cut(s)	531, 552
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	4 cut(s)	160, 512, 691, 856
Tru1I	TTAA	1 cut(s)	731
Tru9I	TTAA	1 cut(s)	731
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	39, 116, 784
TspGWI	ACGGA	2 cut(s)	185, 319
TspRI	CASTG	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	346
XceI	RCATGY	2 cut(s)	559, 751
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	4 cut(s)	371, 620, 720, 846
Zsp2I	ATGCAT	2 cut(s)	189, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.