Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023771

Physical Location & Seq

Genomic Coordinates Reverse (-)

16938705 .. 16939616

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGATGATGGAACAAATTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGCTCTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACTCCCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCTCAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCACTTACAAATCCAACCCTACGAATATTGCTACATCTATATGGAGTACGCCTCCAAAGGTAATCTCCATAGGTTTATATATGGTTTCCGTCGGAAAGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCTCTTCCCTTCCACAACTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCATCCAAAGAGCCTGACACCGATCATGATCCTACGTCCCTTGGTACTGTTGAGTACATGCCCCCGGACTCTTTTGTACCAAACGGACTGATCGATCCGGGACATATCGATCCAGCCCTTGATATATATTCTCTAGGGTGTGTGGTTAATGAGATGTTTGGAGCTATACCTATCCAGGAGTACTTTGACGAATTTTACGTATGGCATTTGCGTGACGTTATCTCTCCGCAGGCTCAAGATTTCTTAAGGCGATGCGATGACATGCGTTCACGCAGGCCCACCGCGACTGAGCTCTTGAAACATCCTTTTATTACACAAGGACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

303

Amino Acids

34.94

Weight (kDa)

5.78

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 274	3.8e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 231	1.6e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40500 AT2G40560 AT2G40580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	794
AciI	CCGC	2 cut(s)	737, 792
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	6 cut(s)	194, 376, 495, 533, 599, 614
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	15, 701
AfaI	GTAC	5 cut(s)	287, 556, 566, 588, 692
AflII	CTTAAG	1 cut(s)	754
AgsI	TTSAA	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	472, 684
AluBI	AGCT	7 cut(s)	64, 181, 238, 496, 674, 802, 898
AluI	AGCT	7 cut(s)	64, 181, 238, 496, 674, 802, 898
Alw21I	GWGCWC	2 cut(s)	183, 804
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	6 cut(s)	194, 376, 495, 533, 599, 614
Ama87I	CYCGRG	3 cut(s)	104, 170, 395
AoxI	GGCC	2 cut(s)	76, 785
ApoI	RAATTY	2 cut(s)	15, 701
AspS9I	GGNCC	1 cut(s)	786
AsuC2I	CCSGG	2 cut(s)	575, 609
AvaI	CYCGRG	3 cut(s)	104, 170, 395
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BanII	GRGCYC	2 cut(s)	183, 804
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
BbsI	GAAGAC	2 cut(s)	42, 858
Bbv12I	GWGCWC	2 cut(s)	183, 804
BccI	CCATC	2 cut(s)	448, 844
BceAI	ACGGC	2 cut(s)	387, 466
BciT130I	CCWGG	2 cut(s)	474, 686
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	575, 609
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	3 cut(s)	386, 644, 870
BfrI	CTTAAG	1 cut(s)	754
BmcAI	AGTACT	1 cut(s)	692
Bme1390I	CCNGG	4 cut(s)	474, 575, 609, 686
BmeT110I	CYCGRG	3 cut(s)	104, 170, 395
BmgT120I	GGNCC	1 cut(s)	786
BmrFI	CCNGG	4 cut(s)	474, 575, 609, 686
BmsI	GCATC	5 cut(s)	141, 163, 202, 225, 752
BpiI	GAAGAC	2 cut(s)	42, 858
BplI	GAGNNNNNCTC	4 cut(s)	98, 130, 275, 307
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	3 cut(s)	419, 476, 729
BpuMI	CCSGG	2 cut(s)	575, 609
Bsa29I	ATCGAT	2 cut(s)	603, 618
BsaAI	YACGTR	1 cut(s)	709
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	5 cut(s)	79, 412, 482, 550, 573
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	474, 686
BseCI	ATCGAT	2 cut(s)	603, 618
BseDI	CCNNGG	5 cut(s)	79, 412, 482, 550, 573
BseGI	GGATG	4 cut(s)	208, 440, 512, 811
BseJI	GATNNNNATC	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	196, 342, 789
BseRI	GAGGAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	794
BshFI	GGCC	2 cut(s)	78, 787
BshVI	ATCGAT	2 cut(s)	603, 618
BsiHKAI	GWGCWC	2 cut(s)	183, 804
BsiHKCI	CYCGRG	3 cut(s)	104, 170, 395
BsiSI	CCGG	2 cut(s)	575, 608
BslFI	GGGAC	2 cut(s)	532, 624
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	532, 624
BsnI	GGCC	2 cut(s)	78, 787
BsoBI	CYCGRG	3 cut(s)	104, 170, 395
Bsp1286I	GDGCHC	2 cut(s)	183, 804
Bsp143I	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	2 cut(s)	737, 792
BspANI	GGCC	2 cut(s)	78, 787
BspCNI	CTCAG	3 cut(s)	195, 343, 790
BspDI	ATCGAT	2 cut(s)	603, 618
BspFNI	CGCG	1 cut(s)	794
BspHI	TCATGA	1 cut(s)	535
BspPI	GGATC	6 cut(s)	194, 376, 495, 533, 599, 614
BspQI	GCTCTTC	2 cut(s)	333, 408
BspTI	CTTAAG	1 cut(s)	754
BssECI	CCNNGG	5 cut(s)	79, 412, 482, 550, 573
BssMI	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
BssT1I	CCWWGG	2 cut(s)	412, 550
Bst2UI	CCWGG	2 cut(s)	474, 686
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	4 cut(s)	73, 333, 408, 461
BstAFI	CTTAAG	1 cut(s)	754
BstBAI	YACGTR	1 cut(s)	709
BstC8I	GCNNGC	3 cut(s)	498, 741, 785
BstDEI	CTNAG	3 cut(s)	182, 351, 798
BstDSI	CCRYGG	2 cut(s)	412, 482
BstF5I	GGATG	4 cut(s)	208, 440, 512, 811
BstFNI	CGCG	1 cut(s)	794
BstKTI	GATC	9 cut(s)	189, 208, 384, 490, 535, 541, 603, 607, 622
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
BstNI	CCWGG	2 cut(s)	474, 686
BstNSI	RCATGY	2 cut(s)	571, 775
BstSCI	CCNGG	4 cut(s)	472, 573, 607, 684
BstSNI	TACGTA	1 cut(s)	709
BstUI	CGCG	1 cut(s)	794
BstV2I	GAAGAC	2 cut(s)	42, 858
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
Bsu15I	ATCGAT	2 cut(s)	603, 618
BsuRI	GGCC	2 cut(s)	78, 787
BsuTUI	ATCGAT	2 cut(s)	603, 618
BtgI	CCRYGG	2 cut(s)	412, 482
BtgZI	GCGATG	4 cut(s)	129, 775, 780, 822
BtsCI	GGATG	4 cut(s)	208, 440, 512, 811
Cac8I	GCNNGC	3 cut(s)	498, 741, 785
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	786
ClaI	ATCGAT	2 cut(s)	603, 618
Csp6I	GTAC	5 cut(s)	286, 555, 565, 587, 691
CviAII	CATG	5 cut(s)	190, 413, 536, 568, 772
CviQI	GTAC	5 cut(s)	286, 555, 565, 587, 691
DdeI	CTNAG	3 cut(s)	182, 351, 798
DpnI	GATC	9 cut(s)	188, 207, 383, 489, 534, 540, 602, 606, 621
DpnII	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	4 cut(s)	73, 333, 408, 461
EarI	CTCTTC	4 cut(s)	73, 333, 408, 461
Ecl136II	GAGCTC	2 cut(s)	181, 802
Eco105I	TACGTA	1 cut(s)	709
Eco130I	CCWWGG	2 cut(s)	412, 550
Eco24I	GRGCYC	2 cut(s)	183, 804
Eco32I	GATATC	1 cut(s)	867
Eco53kI	GAGCTC	2 cut(s)	181, 802
Eco88I	CYCGRG	3 cut(s)	104, 170, 395
EcoICRI	GAGCTC	2 cut(s)	181, 802
EcoRII	CCWGG	2 cut(s)	472, 684
EcoRV	GATATC	1 cut(s)	867
EcoT14I	CCWWGG	2 cut(s)	412, 550
EcoT22I	ATGCAT	2 cut(s)	156, 195
EcoT38I	GRGCYC	2 cut(s)	183, 804
ErhI	CCWWGG	2 cut(s)	412, 550
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	5 cut(s)	193, 416, 539, 571, 775
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	2 cut(s)	532, 624
FatI	CATG	5 cut(s)	189, 412, 535, 567, 771
FbaI	TGATCA	1 cut(s)	205
FokI	GGATG	4 cut(s)	195, 427, 499, 798
FriOI	GRGCYC	2 cut(s)	183, 804
FspBI	CTAG	3 cut(s)	386, 644, 870
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	78, 787
HapII	CCGG	2 cut(s)	575, 608
Hin1II	CATG	5 cut(s)	193, 416, 539, 571, 775
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	3 cut(s)	236, 494, 896
HinfI	GANTC	7 cut(s)	47, 113, 166, 353, 393, 578, 880
HpaII	CCGG	2 cut(s)	575, 608
Hpy166II	GTNNAC	4 cut(s)	43, 57, 424, 779
Hpy188I	TCNGA	1 cut(s)	333
Hpy8I	GTNNAC	4 cut(s)	43, 57, 424, 779
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	4 cut(s)	103, 169, 383, 471
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	6 cut(s)	96, 420, 447, 545, 708, 726
HpyCH4V	TGCA	3 cut(s)	21, 154, 193
HpyF3I	CTNAG	3 cut(s)	182, 351, 798
HpySE526I	ACGT	6 cut(s)	96, 420, 447, 545, 708, 726
Hsp92II	CATG	5 cut(s)	193, 416, 539, 571, 775
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
LguI	GCTCTTC	2 cut(s)	333, 408
LmnI	GCTCC	2 cut(s)	178, 671
LweI	GCATC	5 cut(s)	141, 163, 202, 225, 752
MaeI	CTAG	3 cut(s)	386, 644, 870
MaeII	ACGT	6 cut(s)	96, 420, 447, 545, 708, 726
MaeIII	GTNAC	3 cut(s)	92, 416, 722
MalI	GATC	9 cut(s)	188, 207, 383, 489, 534, 540, 602, 606, 621
MboI	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
MboII	GAAGA	6 cut(s)	42, 60, 350, 395, 448, 863
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	2 cut(s)	183, 804
MluCI	AATT	2 cut(s)	15, 701
MlyI	GAGTC	5 cut(s)	56, 107, 362, 387, 572
MmeI	TCCRAC	4 cut(s)	141, 277, 311, 468
MnlI	CCTC	7 cut(s)	74, 222, 238, 301, 391, 443, 464
Mph1103I	ATGCAT	2 cut(s)	156, 195
MseI	TTAA	2 cut(s)	657, 755
MslI	CAYNNNNRTG	3 cut(s)	278, 411, 720
MspCI	CTTAAG	1 cut(s)	754
MspI	CCGG	2 cut(s)	575, 608
MspR9I	CCNGG	4 cut(s)	474, 575, 609, 686
MvaI	CCWGG	2 cut(s)	474, 686
MvnI	CGCG	1 cut(s)	794
NciI	CCSGG	2 cut(s)	575, 609
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
NlaIII	CATG	5 cut(s)	193, 416, 539, 571, 775
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	722
NsiI	ATGCAT	2 cut(s)	156, 195
NspI	RCATGY	2 cut(s)	571, 775
PaeR7I	CTCGAG	3 cut(s)	104, 170, 395
PagI	TCATGA	1 cut(s)	535
PciSI	GCTCTTC	2 cut(s)	333, 408
PcsI	WCGNNNNNNNCGW	5 cut(s)	102, 373, 426, 600, 705
PfeI	GAWTC	2 cut(s)	166, 880
PfoI	TCCNGGA	3 cut(s)	472, 607, 684
PleI	GAGTC	5 cut(s)	55, 107, 361, 387, 572
PpsI	GAGTC	5 cut(s)	55, 107, 361, 387, 572
Ppu21I	YACGTR	1 cut(s)	709
Psp124BI	GAGCTC	2 cut(s)	183, 804
Psp1406I	AACGTT	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	472, 684
PspGI	CCWGG	2 cut(s)	472, 684
PspPI	GGNCC	1 cut(s)	786
PspXI	VCTCGAGB	1 cut(s)	395
PsrI	GAACNNNNNNTAC	2 cut(s)	77, 109
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	5 cut(s)	287, 556, 566, 588, 692
RsaNI	GTAC	5 cut(s)	286, 555, 565, 587, 691
RseI	CAYNNNNRTG	3 cut(s)	278, 411, 720
SacI	GAGCTC	2 cut(s)	183, 804
SapI	GCTCTTC	2 cut(s)	333, 408
SaqAI	TTAA	2 cut(s)	657, 755
Sau3AI	GATC	9 cut(s)	186, 205, 381, 487, 532, 538, 600, 604, 619
Sau96I	GGNCC	1 cut(s)	786
ScaI	AGTACT	1 cut(s)	692
SchI	GAGTC	5 cut(s)	56, 107, 362, 387, 572
ScrFI	CCNGG	4 cut(s)	474, 575, 609, 686
SduI	GDGCHC	2 cut(s)	183, 804
SfaNI	GCATC	5 cut(s)	141, 163, 202, 225, 752
Sfr274I	CTCGAG	3 cut(s)	104, 170, 395
SlaI	CTCGAG	3 cut(s)	104, 170, 395
SmiMI	CAYNNNNRTG	3 cut(s)	278, 411, 720
SmlI	CTYRAG	7 cut(s)	104, 170, 395, 434, 491, 744, 754
SmoI	CTYRAG	7 cut(s)	104, 170, 395, 434, 491, 744, 754
SnaBI	TACGTA	1 cut(s)	709
Sse9I	AATT	2 cut(s)	15, 701
SsiI	CCGC	2 cut(s)	737, 792
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	3 cut(s)	386, 644, 870
SstI	GAGCTC	2 cut(s)	183, 804
StyD4I	CCNGG	4 cut(s)	472, 573, 607, 684
StyI	CCWWGG	2 cut(s)	412, 550
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	6 cut(s)	99, 423, 450, 548, 711, 729
TaqI	TCGA	6 cut(s)	105, 171, 396, 603, 618, 893
TasI	AATT	2 cut(s)	15, 701
TatI	WGTACW	2 cut(s)	564, 690
TfiI	GAWTC	2 cut(s)	166, 880
Tru1I	TTAA	2 cut(s)	657, 755
Tru9I	TTAA	2 cut(s)	657, 755
TseFI	GTSAC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	3 cut(s)	191, 317, 609
Vha464I	CTTAAG	1 cut(s)	754
XapI	RAATTY	2 cut(s)	15, 701
XceI	RCATGY	2 cut(s)	571, 775
XhoI	CTCGAG	3 cut(s)	104, 170, 395
XspI	CTAG	3 cut(s)	386, 644, 870
ZrmI	AGTACT	1 cut(s)	692
Zsp2I	ATGCAT	2 cut(s)	156, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.