Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017177

Physical Location & Seq

Genomic Coordinates Forward (+)

17132602 .. 17134554

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGCGTTGCTCAGTTTCCTCTGTTGTTCGTCCACTATCAGTAGATCCTGCGACAGCCATAGCTACTTTGTGCTCAAAGGGTAACCTTCGAGAAGCTTTCCAGAGATTCCGACTCAACATCTTCACAAACACTTCTCTCTTCACCCCTTTTATTCAATCATGCACCACCAGACAATCTCTTCCGTCCGGAAAGCAGCTCCATTGTCTTCTCGTCGTCTCCGGATTCTCCTCCGACAAGTTCATATGCAATCATCTGATGAGCATGTACTCCAAGCTTGGAGATTTTCCTTCCGCTGTTGCAGTATATGGACGTATGCGTAAGAAGAATTATATGTCATCTAACATACTCATCAATGGGTATGTTCGTGCAGGCGATTTGGTAAATGCCCGGAAGGTGTTTGATGAAATGCCTGATAGAAAGCTCACAACTTGGAATGCTATGATTGCTGGTTTGATCCAGTTTGAGTTTAACGAAGAGGGTTTGAGTTTGTTTAGGGAAATGCACGGATTGGGGTTTTCGCCTGATGAATATACTCTTGGTAGTGTTTTTAGCGGATCTGCTGGGTTGAGGTCAGTGTCTATAGGGCAGCAGATTCATGGCTACACGATCAAATATGGGCTTGAGTTGGATTTAGTTGTTAATAGTTCGTTGGCTCATATGTATATGAGAAATGGGAAATTGCAAGATGGCGAGATTGTTATAAGATCAATGCCGGTTCGTAATTTGGTTGCATGGAATACACTCATCATGGGGAACGCGCAAAACGGATGTCCTGAAACCGTGCTTTATCTGTATAAGATGATGAAAATCTCAGGTTGTAGGCCGAACAAGATCACATTTGTAACTGTGCTCAGTTCTTGTTCTGACTTAGCGATAAGAGGTCAAGGTCAGCAGATTCATGCGGAAGCTATTAAAATTGGGGCTAGCTCTGTCGTAGCTGTAGTTAGTTCATTGATCAGTATGTATTCAAAATGTGGGTGTCTTGGAGATGCAGCTAAAGCTTTCTCGGAACGTGAAGATGAAGATGAAGTGATGTGGAGCTCAATGATTTCTGCTTATGGGTTTCATGGACAAGGCGATGAGGCAATCGAGCTGTTTAATACTATGGCAGAGCAGACGAACATGGAGATAAACGAGGTCGCGTTTCTGAATTTACTTTATGCGTGTAGTCATTCTGGCTTAAAAGACAAAGGGCTTGAGTTGTTTGACATGATGGTGGAAAAATACGGGTTCAAGCCAGGTTTAAAGCACTACACTTGTGTGGTGGATTTGCTCGGTCGAGCAGGCTGTTTGGATCAAGCCGAGGCAATAATAAGGTCTATGCCAATAAAAACAGACATTGTTATATGGAAAACATTGTTATCTGCGTGTAACATACACAAAAACGCAGAAATGGCACAGAGAGTCTTTAAAGAGATTCTTCAGATTGACCCTAATGACTCTGCTTGTTACGTCCTGCTTGCAAATGTTCACGCCTCAGCTAAGAGATGGCGCGATGTATCAGAGGTGAGAAAATCGATGAGAGATAAGAATGTGAAGAAAGAAGCGGGAATCAGCTGGTTTGAACACAAAGGTGAAGTTCATCAGTTTAAGATGGGAGATCGCTCTCAGTCTAAATCTAAAGAGATCTATTCATACCTGAAAGAACTGACTCTGGAGATGAAGCTGAAGGGATACAAGCCTGATACAGCGTCAGTATTGCATGATATGGATGAGGAGGAGAAAGAATCAGACTTGGTGCAGCACAGCGAGAAACTAGCGGTTGCATTTGCGCTCATGATATTACCTGAAGGTGCACCGATTAGAATAATCAAGAACTTGCGGGTTTGCAGTGATTGCCATGTTGCTTTCAAATATATATCGGTGATCAAGAACCGAGAGATCACGTTAAGAGATGGTAGTAGATTCCATCATTTCATTAACGGAAAGTGTTCTTGCGGCGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

650

Amino Acids

72.82

Weight (kDa)

8.37

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	142 - 185	2.2e-06	PPR repeat family
PPR_2	PF13041	241 - 288	9.7e-09	PPR repeat family
PPR_2	PF13041	342 - 390	8.7e-06	PPR repeat family
PPR	PF01535	344 - 370	1.3e-06	PPR repeat
E_motif	PF20431	460 - 522	1e-16	E motif
DYW_deaminase	PF14432	558 - 650	1.4e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41080
fragaria_vesca	FvH4_6g27771
malus_domestica	MD17G1263700.v1.1
prunus_persica	Prupe.3G112800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0131051
rosa_laevigata	RLG00000019164
rosa_roxburghii	Rroxscaffold_2G00113270
rosa_rugosa	Rorug02G0294600
rosa_samantha	Rh2BG354400 Rh2CG332900 Rh2DG372400
rosa_wichuraiana	Rw2G028130 Rw2G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccII	CGCG	3 cut(s)	758, 1142, 1494
AccIII	TCCGGA	2 cut(s)	185, 218
AciI	CCGC	7 cut(s)	291, 552, 902, 1547, 1760, 1822, 1938
AclWI	GGATC	4 cut(s)	38, 448, 562, 1302
AcsI	RAATTY	1 cut(s)	1150
AcuI	CTGAAG	3 cut(s)	1406, 1688, 1809
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	5 cut(s)	155, 969, 1234, 1565, 1852
AjnI	CCWGG	1 cut(s)	1237
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AleI	CACNNNNGTG	2 cut(s)	1259, 1572
Alw21I	GWGCWC	4 cut(s)	74, 852, 1043, 1798
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	1794
AlwI	GGATC	4 cut(s)	38, 448, 562, 1302
Aor13HI	TCCGGA	2 cut(s)	185, 218
AoxI	GGCC	1 cut(s)	821
ApaLI	GTGCAC	1 cut(s)	1794
ApeKI	GCWGC	4 cut(s)	193, 586, 992, 1741
ApoI	RAATTY	1 cut(s)	1150
ArsI	GACNNNNNNTTYG	2 cut(s)	754, 786
Asp700I	GAANNNNTTC	1 cut(s)	1930
AspLEI	GCGC	3 cut(s)	760, 1494, 1774
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	4 cut(s)	133, 1519, 1586, 1876
AsuNHI	GCTAGC	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	1798
BanII	GRGCYC	1 cut(s)	1043
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	4 cut(s)	74, 852, 1043, 1798
BbvCI	CCTCAGC	1 cut(s)	1477
BbvI	GCAGC	4 cut(s)	205, 598, 1004, 1753
BccI	CCATC	6 cut(s)	680, 1207, 1482, 1588, 1889, 1917
BciT130I	CCWGG	1 cut(s)	1239
BciVI	GTATCC	1 cut(s)	1667
BclI	TGATCA	2 cut(s)	954, 1866
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	924, 1757
BfmI	CTRYAG	2 cut(s)	579, 939
BfuI	GTATCC	1 cut(s)	1667
BglII	AGATCT	1 cut(s)	1626
BisI	GCNGC	5 cut(s)	194, 587, 993, 1742, 1939
BlsI	GCNGC	5 cut(s)	195, 588, 994, 1743, 1940
Bme1390I	CCNGG	2 cut(s)	388, 1239
BmrFI	CCNGG	2 cut(s)	388, 1239
BmsI	GCATC	1 cut(s)	979
BmtI	GCTAGC	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	1676
Bpu10I	CCTNAGC	1 cut(s)	1477
BpuEI	CTTGAG	2 cut(s)	641, 1217
BpuMI	CCSGG	1 cut(s)	388
Bsa29I	ATCGAT	1 cut(s)	1517
BsaBI	GATNNNNATC	1 cut(s)	806
BsaJI	CCNNGG	1 cut(s)	1302
BsaWI	WCCGGW	2 cut(s)	185, 218
Bse118I	RCCGGY	1 cut(s)	712
Bse1I	ACTGG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	806
BseAI	TCCGGA	2 cut(s)	185, 218
BseBI	CCWGG	1 cut(s)	1239
BseCI	ATCGAT	1 cut(s)	1517
BseDI	CCNNGG	1 cut(s)	1302
BseGI	GGATG	2 cut(s)	773, 1717
BseJI	GATNNNNATC	1 cut(s)	806
BseMII	CTCAG	5 cut(s)	24, 825, 865, 1491, 1622
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	3 cut(s)	217, 1730, 1733
BseSI	GKGCMC	1 cut(s)	1798
BseXI	GCAGC	4 cut(s)	205, 598, 1004, 1753
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	2 cut(s)	387, 1760
Bsh1236I	CGCG	3 cut(s)	758, 1142, 1494
Bsh1285I	CGRYCG	1 cut(s)	1279
BshFI	GGCC	1 cut(s)	823
BshVI	ATCGAT	1 cut(s)	1517
BsiEI	CGRYCG	1 cut(s)	1279
BsiHKAI	GWGCWC	4 cut(s)	74, 852, 1043, 1798
BsiSI	CCGG	4 cut(s)	186, 219, 388, 713
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	823
Bsp1286I	GDGCHC	4 cut(s)	74, 852, 1043, 1798
Bsp13I	TCCGGA	2 cut(s)	185, 218
BspACI	CCGC	7 cut(s)	291, 552, 902, 1547, 1760, 1822, 1938
BspANI	GGCC	1 cut(s)	823
BspCNI	CTCAG	5 cut(s)	23, 824, 864, 1490, 1621
BspDI	ATCGAT	1 cut(s)	1517
BspEI	TCCGGA	2 cut(s)	185, 218
BspFNI	CGCG	3 cut(s)	758, 1142, 1494
BspHI	TCATGA	1 cut(s)	1776
BspOI	GCTAGC	1 cut(s)	927
BspPI	GGATC	4 cut(s)	38, 448, 562, 1302
BsrFI	RCCGGY	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	1 cut(s)	1302
Bst2UI	CCWGG	1 cut(s)	1239
Bst4CI	ACNGT	2 cut(s)	781, 847
Bst6I	CTCTTC	3 cut(s)	143, 183, 468
BstAPI	GCANNNNNTGC	1 cut(s)	1836
BstC8I	GCNNGC	4 cut(s)	370, 925, 1285, 1461
BstDEI	CTNAG	7 cut(s)	10, 811, 851, 868, 1477, 1482, 1608
BstEII	GGTNACC	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	773, 1717
BstFNI	CGCG	3 cut(s)	758, 1142, 1494
BstHHI	GCGC	3 cut(s)	760, 1494, 1774
BstMAI	GTCTC	1 cut(s)	220
BstMCI	CGRYCG	1 cut(s)	1279
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 998, 1394, 1836
BstNI	CCWGG	1 cut(s)	1239
BstNSI	RCATGY	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	386, 1237
BstSFI	CTRYAG	2 cut(s)	579, 939
BstSLI	GKGCMC	1 cut(s)	1798
BstUI	CGCG	3 cut(s)	758, 1142, 1494
BstV1I	GCAGC	4 cut(s)	205, 598, 1004, 1753
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	3 cut(s)	43, 554, 1626
BstYI	RGATCY	3 cut(s)	43, 554, 1626
Bsu15I	ATCGAT	1 cut(s)	1517
BsuI	GTATCC	1 cut(s)	1667
BsuRI	GGCC	1 cut(s)	823
BsuTUI	ATCGAT	1 cut(s)	1517
BtgZI	GCGATG	2 cut(s)	1092, 1509
BtsCI	GGATG	2 cut(s)	773, 1717
BtsI	GCAGTG	1 cut(s)	1837
BtsIMutI	CAGTG	2 cut(s)	579, 1837
Cac8I	GCNNGC	4 cut(s)	370, 925, 1285, 1461
CciI	TCATGA	1 cut(s)	1776
CfoI	GCGC	3 cut(s)	760, 1494, 1774
Cfr10I	RCCGGY	1 cut(s)	712
ClaI	ATCGAT	1 cut(s)	1517
CseI	GACGC	1 cut(s)	1680
Csp6I	GTAC	1 cut(s)	265
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	7 cut(s)	10, 811, 851, 868, 1477, 1482, 1608
DraI	TTTAAA	2 cut(s)	1245, 1411
Eam1104I	CTCTTC	3 cut(s)	143, 183, 468
EarI	CTCTTC	3 cut(s)	143, 183, 468
Ecl136II	GAGCTC	1 cut(s)	1041
Eco24I	GRGCYC	1 cut(s)	1043
Eco53kI	GAGCTC	1 cut(s)	1041
Eco57I	CTGAAG	3 cut(s)	1406, 1688, 1809
Eco91I	GGTNACC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	1041
EcoO65I	GGTNACC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	1237
EcoT38I	GRGCYC	1 cut(s)	1043
Esp3I	CGTCTC	1 cut(s)	220
FalI	AAGNNNNNCTT	2 cut(s)	1404, 1436
FauI	CCCGC	2 cut(s)	1540, 1815
FauNDI	CATATG	2 cut(s)	242, 657
FbaI	TGATCA	2 cut(s)	954, 1866
Fnu4HI	GCNGC	5 cut(s)	194, 587, 993, 1742, 1939
FokI	GGATG	2 cut(s)	780, 1724
FriOI	GRGCYC	1 cut(s)	1043
Fsp4HI	GCNGC	5 cut(s)	194, 587, 993, 1742, 1939
FspBI	CTAG	2 cut(s)	924, 1757
GlaI	GCGC	3 cut(s)	759, 1493, 1773
GluI	GCNGC	5 cut(s)	194, 587, 993, 1742, 1939
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	1676
HaeIII	GGCC	1 cut(s)	823
HapII	CCGG	4 cut(s)	186, 219, 388, 713
HgaI	GACGC	1 cut(s)	1680
HhaI	GCGC	3 cut(s)	760, 1494, 1774
Hin6I	GCGC	3 cut(s)	758, 1492, 1772
HinP1I	GCGC	3 cut(s)	758, 1492, 1772
HindIII	AAGCTT	3 cut(s)	93, 272, 999
HpaII	CCGG	4 cut(s)	186, 219, 388, 713
HphI	GGTGA	4 cut(s)	133, 1519, 1586, 1876
Hpy166II	GTNNAC	3 cut(s)	32, 1471, 1796
Hpy188I	TCNGA	9 cut(s)	110, 232, 255, 865, 1009, 1149, 1425, 1504, 1732
Hpy188III	TCNNGA	9 cut(s)	89, 100, 186, 219, 773, 1655, 1777, 1813, 1870
Hpy8I	GTNNAC	3 cut(s)	32, 1471, 1796
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	5 cut(s)	95, 297, 385, 1663, 1784
HpyCH4III	ACNGT	2 cut(s)	781, 847
HpyCH4IV	ACGT	4 cut(s)	310, 1012, 1452, 1886
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 998, 1394, 1836
HpyF3I	CTNAG	7 cut(s)	10, 811, 851, 868, 1477, 1482, 1608
HpySE526I	ACGT	4 cut(s)	310, 1012, 1452, 1886
HspAI	GCGC	3 cut(s)	758, 1492, 1772
Kpn2I	TCCGGA	2 cut(s)	185, 218
Ksp22I	TGATCA	2 cut(s)	954, 1866
LmnI	GCTCC	2 cut(s)	201, 1038
Lsp1109I	GCAGC	4 cut(s)	205, 598, 1004, 1753
LweI	GCATC	1 cut(s)	979
MaeI	CTAG	2 cut(s)	924, 1757
MaeII	ACGT	4 cut(s)	310, 1012, 1452, 1886
MaeIII	GTNAC	4 cut(s)	80, 841, 1370, 1448
MflI	RGATCY	3 cut(s)	43, 554, 1626
MhlI	GDGCHC	4 cut(s)	74, 852, 1043, 1798
MluCI	AATT	5 cut(s)	325, 677, 721, 915, 1150
MlyI	GAGTC	4 cut(s)	105, 1413, 1433, 1645
MmeI	TCCRAC	3 cut(s)	133, 255, 606
MroI	TCCGGA	2 cut(s)	185, 218
MroXI	GAANNNNTTC	1 cut(s)	1930
MslI	CAYNNNNRTG	3 cut(s)	1214, 1259, 1572
MspA1I	CMGCKG	2 cut(s)	293, 1557
MspI	CCGG	4 cut(s)	186, 219, 388, 713
MspR9I	CCNGG	2 cut(s)	388, 1239
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	1239
MvnI	CGCG	3 cut(s)	758, 1142, 1494
MwoI	GCNNNNNNNGC	4 cut(s)	443, 998, 1394, 1836
NciI	CCSGG	1 cut(s)	388
NdeI	CATATG	2 cut(s)	242, 657
NheI	GCTAGC	1 cut(s)	923
NmeAIII	GCCGAG	1 cut(s)	1327
NspI	RCATGY	1 cut(s)	265
OliI	CACNNNNGTG	2 cut(s)	1259, 1572
PagI	TCATGA	1 cut(s)	1776
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	1930
PfeI	GAWTC	8 cut(s)	105, 222, 592, 895, 1417, 1551, 1727, 1905
PkrI	GCNGC	5 cut(s)	195, 588, 994, 1743, 1940
PleI	GAGTC	4 cut(s)	105, 1412, 1433, 1645
PpsI	GAGTC	4 cut(s)	105, 1412, 1433, 1645
PsiI	TTATAA	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	1043
Psp6I	CCWGG	1 cut(s)	1237
PspEI	GGTNACC	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	1237
PsuI	RGATCY	3 cut(s)	43, 554, 1626
PvuII	CAGCTG	1 cut(s)	1557
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	3 cut(s)	1214, 1259, 1572
SacI	GAGCTC	1 cut(s)	1043
SatI	GCNGC	5 cut(s)	194, 587, 993, 1742, 1939
SchI	GAGTC	4 cut(s)	105, 1413, 1433, 1645
ScrFI	CCNGG	2 cut(s)	388, 1239
SduI	GDGCHC	4 cut(s)	74, 852, 1043, 1798
SfaNI	GCATC	1 cut(s)	979
SfcI	CTRYAG	2 cut(s)	579, 939
SmiMI	CAYNNNNRTG	3 cut(s)	1214, 1259, 1572
SmlI	CTYRAG	2 cut(s)	620, 1196
SmoI	CTYRAG	2 cut(s)	620, 1196
Sse9I	AATT	5 cut(s)	325, 677, 721, 915, 1150
SsiI	CCGC	7 cut(s)	291, 552, 902, 1547, 1760, 1822, 1938
SspMI	CTAG	2 cut(s)	924, 1757
SstI	GAGCTC	1 cut(s)	1043
StyD4I	CCNGG	2 cut(s)	386, 1237
TaaI	ACNGT	2 cut(s)	781, 847
TaiI	ACGT	4 cut(s)	313, 1015, 1455, 1889
TaqI	TCGA	4 cut(s)	88, 1089, 1279, 1517
TaqII	GACCGA	1 cut(s)	1265
TasI	AATT	5 cut(s)	325, 677, 721, 915, 1150
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	1941
TfiI	GAWTC	8 cut(s)	105, 222, 592, 895, 1417, 1551, 1727, 1905
TscAI	CASTG	2 cut(s)	579, 1837
TseI	GCWGC	4 cut(s)	193, 586, 992, 1741
TspGWI	ACGGA	4 cut(s)	171, 519, 780, 1938
TspRI	CASTG	2 cut(s)	579, 1837
VneI	GTGCAC	1 cut(s)	1794
XapI	RAATTY	1 cut(s)	1150
XceI	RCATGY	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	1930
XspI	CTAG	2 cut(s)	924, 1757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.