Rorug02G0294600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017177
Physical Location & Seq
Reverse (-)
32579886 .. 32583026
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0294600.1

Sequence Viewer

Length: 1629 bp
ATGGGTTTGCTGCCTCATTCACCAAATCAAAAGCTAGTACGTTTCATTTTGATAGTGGAGATGAGAGATAGAGATATGAGGGCTGCTCGTACTTACAGACCAGTTTTTTCATTATCCTGGTTTCTAGTAGTGTTACTGGTAATACCTTTGCTGGTGTTGCTGTTAATCTTTCTGATACAGCCTCTGAGTTCAAGCTCTTCATCATCAACTGCAACTTGGATAGTTGATCATTCTAGTACTTCTGGAAATTTTAGCTACTCTCTAGCTTTAACTGCAGCTCAAGAATGGCCTCAACCTCCAGCTGAAGCTCCACTTACTAGTTTTTTATATGGTAGTCCAAGTCCTGCTCCTGCCCCTCAAATATCAACTGGGGCTATACAAGTTGGTGGTTCTAGAAGAGTAAAATCATGGTGGAGCATGAAGCTAGATAAGCTAGAAGCAAGTTTGGGCAAAGCAAGGTCTTCCATAAGAGAAGCAGCTGGTACATCACTAGTACGACTTAGGAACAAGATCAATTCGACATCAAAAACAGTACAACTAGTACATGACGACGACCCCGACTATGTTCCTCACGGCCGCATATATCGGAACGCCCACGCCTTTCATAGGAGCTACCTATTAATGGAGAAGCTGTTCAAGATATACGTATACGAAGAAGGAGAGGTCCCACTGTTTCATAATGGTCCATGCAAGAGCATATATTCCTCAGAAGGAAGGTTCATTCATGAAATGGAGATGGGCAAATTGTACAGAACAAAAGACCCAGATGAAGCTCACGTTTACTTCATTCCAGTAAGTGTGGTCAATCTGGTTCAGTACCTGTATGTCCCCGATTCAAAAGATCTAGATCCGATGAAGCGAGCCATCGTCGACTACGTTAAAGTCATTGCTGATAGGCATCCTTTCTGGAATAGAAGCCTTGGTGCTGATCATTTCATGCTTTCATGTCATGACTGGGGGCCAACCACGTCATCCTTTGTTCCAAATTTGTTCCACAGGTCCATTAGGGTTCTTTGCAATGCCAATACTTCCGAAGGATTTAATCCATCAAAAGATGCGTCGTTTCCCGAAATTAATCTTCTAACAGGTGAAATCTCAAGTCTAGGTGGTCAGCCTCCATCGACTCGAACTGTCCTCGCCTTTTTCGCCGGTCGTCTTCATGGCCACATTAGGTACCTCCTTTTAAACGAATGGAAAGGCAAAGACCAAGATGTCCAAGTCTATGATGCGCTCCCAAAGAAAGTGTCCTATGAAAAAAAGTTGAAAAGTAGCAAGTTTTGCTTGTGCCCAAGTGGGTATGAAGTGGCAAGTCCAAGAGTGGTGGAAGCAATCTATGCCGAGTGTGTTCCGGTGTTGATTTCAGATGCTTATGTCCCACCTTTCAGTGATGTTTTGAATTGGAAGTCATTTTCTGTTCAAATAGATGTGAAGAACATATCGGATATCAAGAACATATTGATGGGGATATCTCATAGGCAGTACCTAAGAATGCAAAGGAATGTGAAACAAGTGCAACGACATTTTGTGGTGAATGGACCTCCTAGGAGATATGATGTTTTCCACATGATTGTTCACTCTATTTGGCTTAGAAGGTTAAATATTCGCGTTCATGATTTTCGGAACCAATAA

Protein Analysis

542

Amino Acids

61.7

Weight (kDa)

9.43

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 209 - 487 1.3e-59 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41080
fragaria_vesca FvH4_6g27771
malus_domestica MD17G1263700.v1.1
prunus_persica Prupe.3G112800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131051
rosa_laevigata RLG00000019164
rosa_roxburghii Rroxscaffold_2G00113270
rosa_rugosa Rorug02G0294600
rosa_samantha Rh2BG354400 Rh2CG332900 Rh2DG372400
rosa_wichuraiana Rw2G028130 Rw2G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1211
Acc65I GGTACC 1 cut(s) 1173
AccB1I GGYRCC 1 cut(s) 1173
AccI GTMKAC 2 cut(s) 648, 870
AccII CGCG 1 cut(s) 1605
AciI CCGC 1 cut(s) 577
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 2 cut(s) 574, 1162
AcsI RAATTY 2 cut(s) 247, 985
AcuI CTGAAG 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 606, 622
AgsI TTSAA 6 cut(s) 192, 637, 837, 1264, 1396, 1418
AhlI ACTAGT 3 cut(s) 317, 490, 538
AjiI CACGTC 1 cut(s) 969
AjnI CCWGG 1 cut(s) 116
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AlwI GGATC 1 cut(s) 842
AlwNI CAGNNNCTG 2 cut(s) 184, 820
AoxI GGCC 4 cut(s) 287, 574, 959, 1162
ApeKI GCWGC 4 cut(s) 10, 83, 275, 476
ApoI RAATTY 2 cut(s) 247, 985
ArsI GACNNNNNNTTYG 4 cut(s) 1043, 1075, 1229, 1261
AseI ATTAAT 2 cut(s) 620, 1074
Asp700I GAANNNNTTC 1 cut(s) 632
Asp718I GGTACC 1 cut(s) 1173
AspA2I CCTAGG 1 cut(s) 1541
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 5 cut(s) 664, 683, 959, 999, 1535
AsuHPI GGTGA 3 cut(s) 12, 1100, 1540
AvaII GGWCC 4 cut(s) 664, 683, 999, 1535
AvrII CCTAGG 1 cut(s) 1541
BaeGI GKGCMC 1 cut(s) 1289
BalI TGGCCA 1 cut(s) 1164
BanI GGYRCC 1 cut(s) 1173
BbsI GAAGAC 2 cut(s) 453, 1148
BbvI GCAGC 3 cut(s) 70, 287, 488
BccI CCATC 5 cut(s) 730, 872, 1054, 1126, 1453
BceAI ACGGC 1 cut(s) 589
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 2 cut(s) 226, 928
BcuI ACTAGT 3 cut(s) 317, 490, 538
BfmI CTRYAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 841
BisI GCNGC 5 cut(s) 11, 84, 276, 477, 577
BlnI CCTAGG 1 cut(s) 1541
BlsI GCNGC 5 cut(s) 12, 85, 277, 478, 578
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 4 cut(s) 664, 683, 999, 1535
BmgBI CACGTC 1 cut(s) 969
BmgT120I GGNCC 5 cut(s) 664, 683, 959, 999, 1535
BmiI GGNNCC 4 cut(s) 666, 960, 1175, 1622
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 2 cut(s) 378, 964
BmsI GCATC 4 cut(s) 907, 1045, 1216, 1354
BmuI ACTGGG 2 cut(s) 378, 964
BpiI GAAGAC 2 cut(s) 453, 1148
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 264, 1081
BsaAI YACGTR 1 cut(s) 646
BsaBI GATNNNNATC 2 cut(s) 846, 897
BsaJI CCNNGG 2 cut(s) 919, 1541
BsaWI WCCGGW 1 cut(s) 1348
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 622
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 5 cut(s) 101, 141, 373, 791, 959
Bse3DI GCAATG 2 cut(s) 885, 1024
Bse8I GATNNNNATC 2 cut(s) 846, 897
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 919, 1541
BseGI GGATG 2 cut(s) 898, 971
BseJI GATNNNNATC 2 cut(s) 846, 897
BseLI CCNNNNNNNGG 2 cut(s) 606, 622
BseMI GCAATG 2 cut(s) 885, 1024
BseMII CTCAG 2 cut(s) 176, 720
BseNI ACTGG 5 cut(s) 101, 141, 373, 791, 959
BseSI GKGCMC 1 cut(s) 1289
BseX3I CGGCCG 1 cut(s) 574
BseXI GCAGC 3 cut(s) 70, 287, 488
Bsh1236I CGCG 1 cut(s) 1605
Bsh1285I CGRYCG 2 cut(s) 577, 1153
BshFI GGCC 4 cut(s) 289, 576, 961, 1164
BshNI GGYRCC 1 cut(s) 1173
BsiEI CGRYCG 2 cut(s) 577, 1153
BsiSI CCGG 2 cut(s) 1149, 1349
BslFI GGGAC 3 cut(s) 650, 812, 1358
BslI CCNNNNNNNGG 2 cut(s) 606, 622
BsmFI GGGAC 3 cut(s) 650, 812, 1358
BsmI GAATGC 1 cut(s) 1494
BsnI GGCC 4 cut(s) 289, 576, 961, 1164
Bsp1286I GDGCHC 1 cut(s) 1289
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 5 cut(s) 226, 510, 841, 847, 928
BspACI CCGC 1 cut(s) 577
BspANI GGCC 4 cut(s) 289, 576, 961, 1164
BspCNI CTCAG 2 cut(s) 177, 719
BspFNI CGCG 1 cut(s) 1605
BspHI TCATGA 3 cut(s) 724, 949, 1609
BspLI GGNNCC 4 cut(s) 666, 960, 1175, 1622
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 842
BspQI GCTCTTC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 1173
BsrDI GCAATG 2 cut(s) 885, 1024
BsrFI RCCGGY 1 cut(s) 1148
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 5 cut(s) 101, 141, 373, 791, 959
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 2 cut(s) 919, 1541
BssMI GATC 5 cut(s) 226, 510, 841, 847, 928
BssNAI GTATAC 1 cut(s) 649
BssT1I CCWWGG 2 cut(s) 919, 1541
Bst1107I GTATAC 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 532, 672, 1132
Bst6I CTCTTC 2 cut(s) 202, 391
BstAPI GCANNNNNTGC 2 cut(s) 1278, 1334
BstAUI TGTACA 1 cut(s) 747
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 5 cut(s) 185, 500, 706, 1484, 1586
BstENI CCTNNNNNAGG 1 cut(s) 604
BstF5I GGATG 2 cut(s) 898, 971
BstFNI CGCG 1 cut(s) 1605
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 5 cut(s) 229, 513, 844, 850, 931
BstMBI GATC 5 cut(s) 226, 510, 841, 847, 928
BstMCI CGRYCG 2 cut(s) 577, 1153
BstMWI GCNNNNNNNGC 6 cut(s) 157, 272, 430, 1145, 1278, 1334
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 1289
BstSNI TACGTA 1 cut(s) 646
BstUI CGCG 1 cut(s) 1605
BstV1I GCAGC 3 cut(s) 70, 287, 488
BstV2I GAAGAC 2 cut(s) 453, 1148
BstX2I RGATCY 2 cut(s) 841, 847
BstYI RGATCY 2 cut(s) 841, 847
BstZ17I GTATAC 1 cut(s) 649
BstZI CGGCCG 1 cut(s) 574
BsuRI GGCC 4 cut(s) 289, 576, 961, 1164
BtrI CACGTC 1 cut(s) 969
BtsCI GGATG 2 cut(s) 898, 971
BtsIMutI CAGTG 2 cut(s) 668, 1390
Cac8I GCNNGC 1 cut(s) 861
CaiI CAGNNNCTG 2 cut(s) 184, 820
CciI TCATGA 3 cut(s) 724, 949, 1609
CfoI GCGC 1 cut(s) 1231
Cfr10I RCCGGY 1 cut(s) 1148
Cfr13I GGNCC 5 cut(s) 664, 683, 959, 999, 1535
CseI GACGC 1 cut(s) 1047
CspCI CAANNNNNGTGG 2 cut(s) 1302, 1337
DdeI CTNAG 5 cut(s) 185, 500, 706, 1484, 1586
DpnI GATC 5 cut(s) 228, 512, 843, 849, 930
DpnII GATC 5 cut(s) 226, 510, 841, 847, 928
DraI TTTAAA 1 cut(s) 1185
DrdI GACNNNNNNGTC 1 cut(s) 1211
DseDI GACNNNNNNGTC 1 cut(s) 1211
EaeI YGGCCR 2 cut(s) 574, 1162
EagI CGGCCG 1 cut(s) 574
Eam1104I CTCTTC 2 cut(s) 202, 391
EarI CTCTTC 2 cut(s) 202, 391
EclXI CGGCCG 1 cut(s) 574
Eco105I TACGTA 1 cut(s) 646
Eco130I CCWWGG 2 cut(s) 919, 1541
Eco32I GATATC 2 cut(s) 1444, 1467
Eco47I GGWCC 4 cut(s) 664, 683, 999, 1535
Eco52I CGGCCG 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 2 cut(s) 1444, 1467
EcoT14I CCWWGG 2 cut(s) 919, 1541
ErhI CCWWGG 2 cut(s) 919, 1541
FalI AAGNNNNNCTT 4 cut(s) 297, 329, 1265, 1297
FaqI GGGAC 3 cut(s) 650, 812, 1358
FbaI TGATCA 2 cut(s) 226, 928
FblI GTMKAC 2 cut(s) 648, 870
Fnu4HI GCNGC 5 cut(s) 11, 84, 276, 477, 577
FokI GGATG 2 cut(s) 885, 958
Fsp4HI GCNGC 5 cut(s) 11, 84, 276, 477, 577
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 5 cut(s) 11, 84, 276, 477, 577
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 4 cut(s) 289, 576, 961, 1164
HapII CCGG 2 cut(s) 1149, 1349
HgaI GACGC 1 cut(s) 1047
HhaI GCGC 1 cut(s) 1231
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HinfI GANTC 2 cut(s) 833, 1123
HpaII CCGG 2 cut(s) 1149, 1349
HphI GGTGA 3 cut(s) 12, 1100, 1540
Hpy166II GTNNAC 4 cut(s) 649, 781, 871, 1573
Hpy188I TCNGA 9 cut(s) 174, 186, 588, 709, 852, 1033, 1363, 1441, 1620
Hpy8I GTNNAC 4 cut(s) 649, 781, 871, 1573
Hpy99I CGWCG 3 cut(s) 554, 872, 1063
HpyAV CCTTC 5 cut(s) 650, 704, 708, 1028, 1584
HpyCH4III ACNGT 3 cut(s) 532, 672, 1132
HpyCH4IV ACGT 5 cut(s) 40, 645, 777, 876, 968
HpyCH4V TGCA 6 cut(s) 212, 275, 690, 1017, 1492, 1513
HpyF10VI GCNNNNNNNGC 6 cut(s) 157, 272, 430, 1145, 1278, 1334
HpyF3I CTNAG 5 cut(s) 185, 500, 706, 1484, 1586
HpySE526I ACGT 5 cut(s) 40, 645, 777, 876, 968
HspAI GCGC 1 cut(s) 1229
KpnI GGTACC 1 cut(s) 1177
Ksp22I TGATCA 2 cut(s) 226, 928
Kzo9I GATC 5 cut(s) 226, 510, 841, 847, 928
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 5 cut(s) 313, 352, 414, 609, 1236
Lsp1109I GCAGC 3 cut(s) 70, 287, 488
LweI GCATC 4 cut(s) 907, 1045, 1216, 1354
MaeII ACGT 5 cut(s) 40, 645, 777, 876, 968
MaeIII GTNAC 1 cut(s) 132
MalI GATC 5 cut(s) 228, 512, 843, 849, 930
MboI GATC 5 cut(s) 226, 510, 841, 847, 928
MboII GAAGA 7 cut(s) 189, 408, 453, 665, 1070, 1148, 1441
MflI RGATCY 2 cut(s) 841, 847
MhlI GDGCHC 1 cut(s) 1289
MlsI TGGCCA 1 cut(s) 1164
MluCI AATT 6 cut(s) 247, 514, 743, 985, 1071, 1396
MluNI TGGCCA 1 cut(s) 1164
MlyI GAGTC 1 cut(s) 1117
Mox20I TGGCCA 1 cut(s) 1164
MroXI GAANNNNTTC 1 cut(s) 632
MscI TGGCCA 1 cut(s) 1164
MseI TTAA 8 cut(s) 164, 269, 620, 879, 1041, 1074, 1184, 1595
MslI CAYNNNNRTG 1 cut(s) 1457
Msp20I TGGCCA 1 cut(s) 1164
MspA1I CMGCKG 2 cut(s) 302, 479
MspI CCGG 2 cut(s) 1149, 1349
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 1494
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 1605
MwoI GCNNNNNNNGC 6 cut(s) 157, 272, 430, 1145, 1278, 1334
NdeII GATC 5 cut(s) 226, 510, 841, 847, 928
NlaIV GGNNCC 4 cut(s) 666, 960, 1175, 1622
NmeAIII GCCGAG 1 cut(s) 1363
PagI TCATGA 3 cut(s) 724, 949, 1609
PciSI GCTCTTC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 555, 873
PctI GAATGC 1 cut(s) 1494
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 833
PkrI GCNGC 5 cut(s) 12, 85, 277, 478, 578
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
Ppu21I YACGTR 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 664
PshBI ATTAAT 2 cut(s) 620, 1074
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 4 cut(s) 666, 960, 1175, 1622
PspPI GGNCC 5 cut(s) 664, 683, 959, 999, 1535
PspPPI RGGWCCY 1 cut(s) 664
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 184, 820
PsuI RGATCY 2 cut(s) 841, 847
PvuII CAGCTG 2 cut(s) 302, 479
RseI CAYNNNNRTG 1 cut(s) 1457
SalI GTCGAC 1 cut(s) 869
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 8 cut(s) 164, 269, 620, 879, 1041, 1074, 1184, 1595
SatI GCNGC 5 cut(s) 11, 84, 276, 477, 577
Sau3AI GATC 5 cut(s) 226, 510, 841, 847, 928
Sau96I GGNCC 5 cut(s) 664, 683, 959, 999, 1535
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 1289
SfaNI GCATC 4 cut(s) 907, 1045, 1216, 1354
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 4 cut(s) 664, 683, 999, 1535
SmiMI CAYNNNNRTG 1 cut(s) 1457
SmlI CTYRAG 2 cut(s) 279, 1096
SmoI CTYRAG 2 cut(s) 279, 1096
SnaBI TACGTA 1 cut(s) 646
SpeI ACTAGT 3 cut(s) 317, 490, 538
Sse9I AATT 6 cut(s) 247, 514, 743, 985, 1071, 1396
SsiI CCGC 1 cut(s) 577
SspI AATATT 1 cut(s) 1600
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 2 cut(s) 919, 1541
TaaI ACNGT 3 cut(s) 532, 672, 1132
TaiI ACGT 5 cut(s) 43, 648, 780, 879, 971
TaqI TCGA 4 cut(s) 518, 870, 1121, 1126
TasI AATT 6 cut(s) 247, 514, 743, 985, 1071, 1396
TatI WGTACW 4 cut(s) 236, 532, 541, 747
TauI GCSGC 1 cut(s) 579
TfiI GAWTC 1 cut(s) 833
Tru1I TTAA 8 cut(s) 164, 269, 620, 879, 1041, 1074, 1184, 1595
Tru9I TTAA 8 cut(s) 164, 269, 620, 879, 1041, 1074, 1184, 1595
TscAI CASTG 2 cut(s) 675, 1390
TseI GCWGC 4 cut(s) 10, 83, 275, 476
TspRI CASTG 2 cut(s) 675, 1390
VpaK11BI GGWCC 4 cut(s) 664, 683, 999, 1535
VspI ATTAAT 2 cut(s) 620, 1074
XagI CCTNNNNNAGG 1 cut(s) 604
XapI RAATTY 2 cut(s) 247, 985
XbaI TCTAGA 2 cut(s) 392, 844
XmaJI CCTAGG 1 cut(s) 1541
XmiI GTMKAC 2 cut(s) 648, 870
XmnI GAANNNNTTC 1 cut(s) 632
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.