AT2G42690

phospholipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012940
Physical Location & Seq
Reverse (-)
17776241 .. 17777717
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42690.1

Sequence Viewer

Length: 1239 bp
ATGGCTACAACAACCACATCATGGGAAGAACTCTTAGGCTCAAAGAATTGGGACACTATCTTAGACCCATTAGACCAATCACTTAGGGAACTCATCTTACGTTGTGGCGACTTTTGTCAAGCCACCTACGATGCCTTCGTCAACGACCAAAACTCCAAGTACTGTGGAGCCAGCCGCTACGGCAAATCTTCTTTCTTCGACAAGGTCATGCTCGAAAACGCTTCCGACTACGAGGTTGTAAACTTCCTCTACGCCACAGCTCGTGTTTCTCTCCCCGAAGGTTTGCTTCTCCAATCACAATCAAGAGATTCTTGGGACCGTGAGTCTAACTGGTTTGGCTACATTGCTGTCACGTCTGATGAACGGTCTAAGGCTTTAGGACGCCGTGAGATCTATATAGCTTTGAGAGGAACGAGCAGGAACTATGAGTGGGTCAATGTTTTGGGTGCTAGGCCAACTTCAGCTGACCCCTTGCTGCACGGACCCGAGCAGGATGGTTCTGGTGGTGTAGTTGAAGGTACGACTTTTGATAGTGACAGTGAAGATGAAGAAGGGTGTAAGGTGATGCTCGGGTGGCTCACAATCTATACTTCTAATCACCCCGAATCGAAATTCACTAAGCTGAGTCTACGGTCACAGTTGTTAGCCAAGATCAAGGAGCTTCTGTTGAAGTATAAGGACGAGAAACCGAGCATTGTGTTGACTGGACATAGCTTGGGAGCTACAGAGGCTGTTCTGGCCGCCTATGATATAGCTGAGAACGGTTCCAGTGATGATGTTCCGGTCACTGCTATAGTCTTTGGTTGTCCACAGGTAGGAAACAAGGAGTTCAGAGACGAAGTAATGAGTCACAAGAACTTAAAGATCCTCCATGTAAGGAACACGATTGATCTCTTAACTCGATACCCAGGGGGACTTTTAGGGTATGTGGACATAGGAATAAACTTTGTGATCGATACAAAGAAGTCACCGTTCCTAAGCGATTCAAGGAATCCAGGGGATTGGCATAATCTTCAGGCGATGTTACATGTTGTAGCTGGATGGAATGGGAAGAAAGGAGAGTTTAAACTGATGGTTAAGAGAAGTATTGCATTAGTGAACAAGTCATGCGAGTTCTTGAAAGCTGAGTGTTTGGTGCCAGGATCTTGGTGGGTAGAGAAGAACAAAGGACTGATCAAGAACGAAGATGGTGAATGGGTTCTTGCTCCCGTTGAAGAAGAACCTGTACCTGAATTCTAA

Protein Analysis

412

Amino Acids

46.06

Weight (kDa)

5.12

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 132 - 304 4.2e-31 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42690
fragaria_vesca FvH4_6g27580
malus_domestica MD00G1191600.v1.1 MD11G1004600.v1.1 MD17G1265700.v1.1
prunus_persica Prupe.3G116300_v2.0.a1
pyrus_communis pycom09g15480 pycom17g26540
rosa_laevigata RLG00000019119
rosa_multiflora Rmu_sc0005625.1_g000015 Rmu_sc0009900.1_g000007
rosa_roxburghii Rroxscaffold_2G00114140
rosa_rugosa Rorug02G0291000
rosa_samantha Rh2AG342400 Rh2BG350300 Rh2CG329500 Rh2DG368500
rosa_wichuraiana Rw2G027700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1135
AccB7I CCANNNNNTGG 1 cut(s) 21
AccI GTMKAC 1 cut(s) 628
AciI CCGC 2 cut(s) 175, 741
AclWI GGATC 2 cut(s) 859, 1150
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 2 cut(s) 611, 1232
AcuI CTGAAG 2 cut(s) 444, 998
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 3 cut(s) 161, 520, 1227
AfiI CCNNNNNNNGG 2 cut(s) 21, 815
AflIII ACRYGT 1 cut(s) 1027
AgsI TTSAA 5 cut(s) 515, 670, 987, 1120, 1214
AhdI GACNNNNNGTC 1 cut(s) 322
AjiI CACGTC 1 cut(s) 354
AjnI CCWGG 3 cut(s) 907, 994, 1138
Alw26I GTCTC 1 cut(s) 828
AlwI GGATC 2 cut(s) 859, 1150
AlwNI CAGNNNCTG 1 cut(s) 731
Ama87I CYCGRG 2 cut(s) 485, 569
AoxI GGCC 2 cut(s) 452, 738
ApeKI GCWGC 1 cut(s) 475
ApoI RAATTY 2 cut(s) 611, 1232
Asp700I GAANNNNTTC 1 cut(s) 1197
AspS9I GGNCC 2 cut(s) 316, 482
AsuHPI GGTGA 4 cut(s) 574, 590, 960, 1202
AvaI CYCGRG 2 cut(s) 485, 569
AvaII GGWCC 2 cut(s) 316, 482
BanI GGYRCC 1 cut(s) 1135
BarI GAAGNNNNNNTAC 1 cut(s) 1209
BauI CACGAG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 462
BccI CCATC 4 cut(s) 488, 1035, 1066, 1181
BceAI ACGGC 2 cut(s) 196, 369
BciT130I CCWGG 3 cut(s) 909, 996, 1140
BclI TGATCA 1 cut(s) 1173
BcoDI GTCTC 1 cut(s) 828
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 2 cut(s) 723, 792
BglI GCCNNNNNGGC 1 cut(s) 180
BglII AGATCT 1 cut(s) 390
BisI GCNGC 3 cut(s) 175, 476, 741
BlsI GCNGC 3 cut(s) 176, 477, 742
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 3 cut(s) 909, 996, 1140
Bme18I GGWCC 2 cut(s) 316, 482
BmeRI GACNNNNNGTC 1 cut(s) 322
BmeT110I CYCGRG 2 cut(s) 485, 569
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 316, 482
BmiI GGNNCC 5 cut(s) 169, 317, 484, 766, 1137
BmrFI CCNGG 3 cut(s) 909, 996, 1140
BmsI GCATC 2 cut(s) 121, 555
BoxI GACNNNNGTC 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 977
Bsa29I ATCGAT 1 cut(s) 954
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 907, 908, 995
BsaWI WCCGGW 1 cut(s) 781
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 650, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 815
Bse1I ACTGG 3 cut(s) 335, 709, 768
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 3 cut(s) 909, 996, 1140
BseCI ATCGAT 1 cut(s) 954
BseDI CCNNGG 3 cut(s) 907, 908, 995
BseGI GGATG 2 cut(s) 499, 1046
BseLI CCNNNNNNNGG 2 cut(s) 21, 815
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 3 cut(s) 614, 747, 1116
BseNI ACTGG 3 cut(s) 335, 709, 768
BseXI GCAGC 1 cut(s) 462
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 2 cut(s) 454, 740
BshNI GGYRCC 1 cut(s) 1135
BshVI ATCGAT 1 cut(s) 954
BsiHKCI CYCGRG 2 cut(s) 485, 569
BsiSI CCGG 1 cut(s) 782
BslFI GGGAC 3 cut(s) 65, 329, 927
BslI CCNNNNNNNGG 2 cut(s) 21, 815
BsmAI GTCTC 1 cut(s) 828
BsmBI CGTCTC 1 cut(s) 828
BsmFI GGGAC 3 cut(s) 65, 329, 927
BsnI GGCC 2 cut(s) 454, 740
BsoBI CYCGRG 2 cut(s) 485, 569
Bsp143I GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
BspACI CCGC 2 cut(s) 175, 741
BspANI GGCC 2 cut(s) 454, 740
BspCNI CTCAG 3 cut(s) 615, 748, 1117
BspDI ATCGAT 1 cut(s) 954
BspLI GGNNCC 5 cut(s) 169, 317, 484, 766, 1137
BspPI GGATC 2 cut(s) 859, 1150
BspT107I GGYRCC 1 cut(s) 1135
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 3 cut(s) 335, 709, 768
BssECI CCNNGG 3 cut(s) 907, 908, 995
BssMI GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
BssNI GRCGYC 1 cut(s) 382
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 909, 996, 1140
Bst4CI ACNGT 8 cut(s) 164, 320, 366, 539, 633, 639, 764, 972
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 9 cut(s) 34, 61, 83, 369, 618, 623, 756, 977, 1125
BstF5I GGATG 2 cut(s) 499, 1046
BstKTI GATC 7 cut(s) 393, 654, 867, 892, 954, 1145, 1176
BstMAI GTCTC 1 cut(s) 828
BstMBI GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
BstMWI GCNNNNNNNGC 4 cut(s) 180, 574, 728, 737
BstNI CCWGG 3 cut(s) 909, 996, 1140
BstNSI RCATGY 1 cut(s) 1031
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 3 cut(s) 907, 994, 1138
BstSFI CTRYAG 2 cut(s) 723, 792
BstV1I GCAGC 1 cut(s) 462
BstX2I RGATCY 3 cut(s) 390, 864, 1142
BstXI CCANNNNNNTGG 2 cut(s) 1002, 1146
BstYI RGATCY 3 cut(s) 390, 864, 1142
Bsu15I ATCGAT 1 cut(s) 954
BsuRI GGCC 2 cut(s) 454, 740
BsuTUI ATCGAT 1 cut(s) 954
BtgZI GCGATG 1 cut(s) 1034
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 499, 1046
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 3 cut(s) 544, 775, 786
Cac8I GCNNGC 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 731
Cfr13I GGNCC 2 cut(s) 316, 482
ClaI ATCGAT 1 cut(s) 954
CseI GACGC 1 cut(s) 390
Csp6I GTAC 3 cut(s) 160, 519, 1226
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 5 cut(s) 21, 208, 872, 1028, 1107
CviQI GTAC 3 cut(s) 160, 519, 1226
DdeI CTNAG 9 cut(s) 34, 61, 83, 369, 618, 623, 756, 977, 1125
DpnI GATC 7 cut(s) 392, 653, 866, 891, 953, 1144, 1175
DpnII GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
DraI TTTAAA 1 cut(s) 1066
DriI GACNNNNNGTC 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 738
Eam1105I GACNNNNNGTC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 316, 482
Eco57I CTGAAG 2 cut(s) 444, 998
Eco88I CYCGRG 2 cut(s) 485, 569
EcoRI GAATTC 1 cut(s) 1232
EcoRII CCWGG 3 cut(s) 907, 994, 1138
Esp3I CGTCTC 1 cut(s) 828
FaeI CATG 5 cut(s) 24, 211, 875, 1031, 1110
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 295, 327
FaqI GGGAC 3 cut(s) 65, 329, 927
FatI CATG 5 cut(s) 20, 207, 871, 1027, 1106
FbaI TGATCA 1 cut(s) 1173
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 3 cut(s) 175, 476, 741
FokI GGATG 2 cut(s) 506, 1053
Fsp4HI GCNGC 3 cut(s) 175, 476, 741
FspBI CTAG 1 cut(s) 450
GluI GCNGC 3 cut(s) 175, 476, 741
HaeIII GGCC 2 cut(s) 454, 740
HapII CCGG 1 cut(s) 782
HgaI GACGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 5 cut(s) 24, 211, 875, 1031, 1110
HincII GTYRAC 2 cut(s) 142, 702
HindII GTYRAC 2 cut(s) 142, 702
HinfI GANTC 7 cut(s) 308, 323, 605, 625, 847, 983, 991
HpaII CCGG 1 cut(s) 782
HphI GGTGA 4 cut(s) 574, 590, 960, 1202
Hpy166II GTNNAC 7 cut(s) 142, 241, 629, 702, 809, 931, 1099
Hpy188I TCNGA 3 cut(s) 226, 358, 833
Hpy188III TCNNGA 3 cut(s) 303, 1117, 1177
Hpy8I GTNNAC 7 cut(s) 142, 241, 629, 702, 809, 931, 1099
HpyAV CCTTC 4 cut(s) 145, 272, 509, 545
HpyCH4III ACNGT 8 cut(s) 164, 320, 366, 539, 633, 639, 764, 972
HpyCH4IV ACGT 2 cut(s) 100, 353
HpyCH4V TGCA 2 cut(s) 478, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 574, 728, 737
HpyF3I CTNAG 9 cut(s) 34, 61, 83, 369, 618, 623, 756, 977, 1125
HpySE526I ACGT 2 cut(s) 100, 353
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 5 cut(s) 24, 211, 875, 1031, 1110
Ksp22I TGATCA 1 cut(s) 1173
Kzo9I GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
LmnI GCTCC 4 cut(s) 167, 658, 719, 1210
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 2 cut(s) 121, 555
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 100, 353
MaeIII GTNAC 7 cut(s) 349, 533, 633, 784, 848, 966, 1023
MalI GATC 7 cut(s) 392, 653, 866, 891, 953, 1144, 1175
MboI GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
MflI RGATCY 3 cut(s) 390, 864, 1142
MluCI AATT 3 cut(s) 46, 611, 1232
MlyI GAGTC 3 cut(s) 332, 634, 856
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 226, 257, 401, 721, 878
MroXI GAANNNNTTC 1 cut(s) 1197
MseI TTAA 4 cut(s) 860, 896, 1065, 1077
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 782
MspR9I CCNGG 3 cut(s) 909, 996, 1140
MssI GTTTAAAC 1 cut(s) 1066
MvaI CCWGG 3 cut(s) 909, 996, 1140
MwoI GCNNNNNNNGC 4 cut(s) 180, 574, 728, 737
NdeII GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
NlaIII CATG 5 cut(s) 24, 211, 875, 1031, 1110
NlaIV GGNNCC 5 cut(s) 169, 317, 484, 766, 1137
NmuCI GTSAC 6 cut(s) 349, 533, 633, 784, 848, 966
NspI RCATGY 1 cut(s) 1031
PasI CCCWGGG 1 cut(s) 908
PciI ACATGT 1 cut(s) 1027
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 1197
PfeI GAWTC 4 cut(s) 308, 605, 983, 991
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 3 cut(s) 176, 477, 742
PleI GAGTC 3 cut(s) 331, 633, 855
PmeI GTTTAAAC 1 cut(s) 1066
PpsI GAGTC 3 cut(s) 331, 633, 855
PscI ACATGT 1 cut(s) 1027
PshAI GACNNNNGTC 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 907, 994, 1138
PspGI CCWGG 3 cut(s) 907, 994, 1138
PspN4I GGNNCC 5 cut(s) 169, 317, 484, 766, 1137
PspPI GGNCC 2 cut(s) 316, 482
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 3 cut(s) 390, 864, 1142
PsyI GACNNNGTC 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 3 cut(s) 161, 520, 1227
RsaNI GTAC 3 cut(s) 160, 519, 1226
SaqAI TTAA 4 cut(s) 860, 896, 1065, 1077
SatI GCNGC 3 cut(s) 175, 476, 741
Sau3AI GATC 7 cut(s) 390, 651, 864, 889, 951, 1142, 1173
Sau96I GGNCC 2 cut(s) 316, 482
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 3 cut(s) 332, 634, 856
ScrFI CCNGG 3 cut(s) 909, 996, 1140
SfaNI GCATC 2 cut(s) 121, 555
SfcI CTRYAG 2 cut(s) 723, 792
SinI GGWCC 2 cut(s) 316, 482
Sse9I AATT 3 cut(s) 46, 611, 1232
SsiI CCGC 2 cut(s) 175, 741
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 907, 994, 1138
TaaI ACNGT 8 cut(s) 164, 320, 366, 539, 633, 639, 764, 972
TaiI ACGT 2 cut(s) 103, 356
TaqI TCGA 5 cut(s) 198, 213, 608, 901, 954
TasI AATT 3 cut(s) 46, 611, 1232
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 177, 743
TfiI GAWTC 4 cut(s) 308, 605, 983, 991
Tru1I TTAA 4 cut(s) 860, 896, 1065, 1077
Tru9I TTAA 4 cut(s) 860, 896, 1065, 1077
TscAI CASTG 3 cut(s) 544, 775, 793
TseFI GTSAC 6 cut(s) 349, 533, 633, 784, 848, 966
TseI GCWGC 1 cut(s) 475
Tsp45I GTSAC 6 cut(s) 349, 533, 633, 784, 848, 966
TspDTI ATGAA 2 cut(s) 375, 561
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 3 cut(s) 544, 775, 793
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 316, 482
XapI RAATTY 2 cut(s) 611, 1232
XceI RCATGY 1 cut(s) 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 1146
XmiI GTMKAC 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 1197
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.