defense response to oomycetes
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Lectin_legB | PF00139 | 14 - 223 | 3.1e-58 | Legume lectin domain |
| Lectin_L-type_dom | PF18483 | 14 - 218 | 5e-06 | Legume lectin beta-barrel domain |
| PK_Tyr_Ser-Thr | PF07714 | 312 - 581 | 1.8e-47 | Protein tyrosine and serine/threonine kinase |
| Pkinase | PF00069 | 313 - 519 | 5e-48 | Protein kinase domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 173, 1634 |
| AatII | GACGTC | 1 cut(s) | 1557 |
| Acc65I | GGTACC | 1 cut(s) | 1934 |
| AccB1I | GGYRCC | 2 cut(s) | 311, 1934 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1813 |
| AccI | GTMKAC | 1 cut(s) | 541 |
| AciI | CCGC | 5 cut(s) | 96, 318, 753, 1530, 1593 |
| AclI | AACGTT | 1 cut(s) | 1300 |
| AclWI | GGATC | 5 cut(s) | 31, 87, 100, 943, 1463 |
| AcoI | YGGCCR | 1 cut(s) | 192 |
| AcsI | RAATTY | 5 cut(s) | 187, 413, 473, 1092, 1124 |
| AcuI | CTGAAG | 1 cut(s) | 1166 |
| AcyI | GRCGYC | 1 cut(s) | 1554 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 299, 705, 778, 1813 |
| AflIII | ACRYGT | 3 cut(s) | 678, 729, 1791 |
| AgsI | TTSAA | 6 cut(s) | 184, 646, 1009, 1107, 1306, 1744 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1149 |
| AjnI | CCWGG | 3 cut(s) | 771, 1060, 1767 |
| Alw21I | GWGCWC | 3 cut(s) | 134, 393, 1521 |
| Alw26I | GTCTC | 5 cut(s) | 9, 904, 1371, 1591, 1880 |
| AlwI | GGATC | 5 cut(s) | 31, 87, 100, 943, 1463 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1067 |
| Ama87I | CYCGRG | 4 cut(s) | 1427, 1682, 1730, 1965 |
| AoxI | GGCC | 4 cut(s) | 192, 276, 959, 1784 |
| ApeKI | GCWGC | 1 cut(s) | 1828 |
| ApoI | RAATTY | 5 cut(s) | 187, 413, 473, 1092, 1124 |
| Asp718I | GGTACC | 1 cut(s) | 1934 |
| AspLEI | GCGC | 2 cut(s) | 266, 874 |
| AspS9I | GGNCC | 3 cut(s) | 959, 1804, 1926 |
| AsuC2I | CCSGG | 2 cut(s) | 1966, 1967 |
| AsuHPI | GGTGA | 5 cut(s) | 583, 594, 651, 853, 1832 |
| AvaI | CYCGRG | 4 cut(s) | 1427, 1682, 1730, 1965 |
| AvaII | GGWCC | 2 cut(s) | 1804, 1926 |
| AxyI | CCTNAGG | 1 cut(s) | 246 |
| BamHI | GGATCC | 1 cut(s) | 92 |
| BanI | GGYRCC | 2 cut(s) | 311, 1934 |
| BanII | GRGCYC | 2 cut(s) | 393, 1521 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 674, 706 |
| BbsI | GAAGAC | 1 cut(s) | 1719 |
| Bbv12I | GWGCWC | 3 cut(s) | 134, 393, 1521 |
| BbvI | GCAGC | 1 cut(s) | 1840 |
| BccI | CCATC | 2 cut(s) | 565, 1691 |
| BceAI | ACGGC | 1 cut(s) | 1067 |
| BciT130I | CCWGG | 3 cut(s) | 773, 1062, 1769 |
| BclI | TGATCA | 2 cut(s) | 322, 496 |
| BcnI | CCSGG | 2 cut(s) | 1966, 1967 |
| BcoDI | GTCTC | 5 cut(s) | 9, 904, 1371, 1591, 1880 |
| BfaI | CTAG | 6 cut(s) | 935, 1019, 1172, 1482, 1580, 1640 |
| BfmI | CTRYAG | 3 cut(s) | 904, 1773, 1826 |
| BfoI | RGCGCY | 1 cut(s) | 267 |
| BglII | AGATCT | 3 cut(s) | 517, 652, 1809 |
| BisI | GCNGC | 2 cut(s) | 754, 1829 |
| BlsI | GCNGC | 2 cut(s) | 755, 1830 |
| Bme1390I | CCNGG | 5 cut(s) | 773, 1062, 1769, 1966, 1967 |
| Bme18I | GGWCC | 2 cut(s) | 1804, 1926 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1149 |
| BmeT110I | CYCGRG | 4 cut(s) | 1427, 1682, 1730, 1965 |
| BmgT120I | GGNCC | 3 cut(s) | 959, 1804, 1926 |
| BmiI | GGNNCC | 5 cut(s) | 94, 313, 1927, 1936, 1953 |
| BmrFI | CCNGG | 5 cut(s) | 773, 1062, 1769, 1966, 1967 |
| BmsI | GCATC | 3 cut(s) | 890, 1060, 1354 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1553 |
| BpiI | GAAGAC | 1 cut(s) | 1719 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1665, 1697, 1713, 1745 |
| BpuMI | CCSGG | 2 cut(s) | 1966, 1967 |
| BsaHI | GRCGYC | 1 cut(s) | 1554 |
| BsaJI | CCNNGG | 5 cut(s) | 70, 331, 807, 1965, 1966 |
| BsaWI | WCCGGW | 1 cut(s) | 1513 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 665, 695, 781, 811 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 299, 705, 778, 1813 |
| Bse118I | RCCGGY | 1 cut(s) | 1387 |
| Bse1I | ACTGG | 2 cut(s) | 84, 313 |
| Bse21I | CCTNAGG | 1 cut(s) | 246 |
| Bse3DI | GCAATG | 2 cut(s) | 726, 1506 |
| BseBI | CCWGG | 3 cut(s) | 773, 1062, 1769 |
| BseDI | CCNNGG | 5 cut(s) | 70, 331, 807, 1965, 1966 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 299, 705, 778, 1813 |
| BseMI | GCAATG | 2 cut(s) | 726, 1506 |
| BseMII | CTCAG | 6 cut(s) | 237, 708, 1125, 1487, 1875, 1884 |
| BseNI | ACTGG | 2 cut(s) | 84, 313 |
| BseRI | GAGGAG | 1 cut(s) | 623 |
| BseXI | GCAGC | 1 cut(s) | 1840 |
| BseYI | CCCAGC | 2 cut(s) | 1490, 1662 |
| BsgI | GTGCAG | 1 cut(s) | 1314 |
| BshFI | GGCC | 4 cut(s) | 194, 278, 961, 1786 |
| BshNI | GGYRCC | 2 cut(s) | 311, 1934 |
| BsiHKAI | GWGCWC | 3 cut(s) | 134, 393, 1521 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1427, 1682, 1730, 1965 |
| BsiSI | CCGG | 3 cut(s) | 1388, 1514, 1966 |
| BslFI | GGGAC | 3 cut(s) | 161, 1507, 1561 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 299, 705, 778, 1813 |
| BsmAI | GTCTC | 5 cut(s) | 9, 904, 1371, 1591, 1880 |
| BsmFI | GGGAC | 3 cut(s) | 161, 1507, 1561 |
| BsmI | GAATGC | 2 cut(s) | 1122, 1423 |
| BsnI | GGCC | 4 cut(s) | 194, 278, 961, 1786 |
| BsoBI | CYCGRG | 4 cut(s) | 1427, 1682, 1730, 1965 |
| Bsp1286I | GDGCHC | 3 cut(s) | 134, 393, 1521 |
| Bsp1407I | TGTACA | 1 cut(s) | 745 |
| BspACI | CCGC | 5 cut(s) | 96, 318, 753, 1530, 1593 |
| BspANI | GGCC | 4 cut(s) | 194, 278, 961, 1786 |
| BspCNI | CTCAG | 6 cut(s) | 238, 707, 1126, 1486, 1876, 1885 |
| BspHI | TCATGA | 1 cut(s) | 1348 |
| BspLI | GGNNCC | 5 cut(s) | 94, 313, 1927, 1936, 1953 |
| BspMAI | CTGCAG | 1 cut(s) | 1830 |
| BspPI | GGATC | 5 cut(s) | 31, 87, 100, 943, 1463 |
| BspQI | GCTCTTC | 1 cut(s) | 1528 |
| BspT107I | GGYRCC | 2 cut(s) | 311, 1934 |
| BsrDI | GCAATG | 2 cut(s) | 726, 1506 |
| BsrFI | RCCGGY | 1 cut(s) | 1387 |
| BsrGI | TGTACA | 1 cut(s) | 745 |
| BsrI | ACTGG | 2 cut(s) | 84, 313 |
| BssAI | RCCGGY | 1 cut(s) | 1387 |
| BssECI | CCNNGG | 5 cut(s) | 70, 331, 807, 1965, 1966 |
| BssNI | GRCGYC | 1 cut(s) | 1554 |
| BssT1I | CCWWGG | 2 cut(s) | 331, 807 |
| Bst2UI | CCWGG | 3 cut(s) | 773, 1062, 1769 |
| Bst4CI | ACNGT | 1 cut(s) | 205 |
| Bst6I | CTCTTC | 3 cut(s) | 53, 639, 1528 |
| BstACI | GRCGYC | 1 cut(s) | 1554 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1079 |
| BstAUI | TGTACA | 1 cut(s) | 745 |
| BstC8I | GCNNGC | 2 cut(s) | 144, 1389 |
| BstDEI | CTNAG | 9 cut(s) | 246, 694, 1134, 1157, 1446, 1473, 1797, 1884, 1893 |
| BstDSI | CCRYGG | 1 cut(s) | 70 |
| BstEII | GGTNACC | 1 cut(s) | 841 |
| BstH2I | RGCGCY | 1 cut(s) | 267 |
| BstHHI | GCGC | 2 cut(s) | 266, 874 |
| BstMAI | GTCTC | 5 cut(s) | 9, 904, 1371, 1591, 1880 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 878, 1079, 1576, 1609 |
| BstNI | CCWGG | 3 cut(s) | 773, 1062, 1769 |
| BstNSI | RCATGY | 3 cut(s) | 682, 733, 1795 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1553 |
| BstPI | GGTNACC | 1 cut(s) | 841 |
| BstSCI | CCNGG | 5 cut(s) | 771, 1060, 1767, 1964, 1965 |
| BstSFI | CTRYAG | 3 cut(s) | 904, 1773, 1826 |
| BstV1I | GCAGC | 1 cut(s) | 1840 |
| BstV2I | GAAGAC | 1 cut(s) | 1719 |
| BstX2I | RGATCY | 5 cut(s) | 92, 517, 652, 948, 1809 |
| BstYI | RGATCY | 5 cut(s) | 92, 517, 652, 948, 1809 |
| Bsu36I | CCTNAGG | 1 cut(s) | 246 |
| BsuRI | GGCC | 4 cut(s) | 194, 278, 961, 1786 |
| BtgI | CCRYGG | 1 cut(s) | 70 |
| BtgZI | GCGATG | 1 cut(s) | 364 |
| Cac8I | GCNNGC | 2 cut(s) | 144, 1389 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1067 |
| CciI | TCATGA | 1 cut(s) | 1348 |
| CfoI | GCGC | 2 cut(s) | 266, 874 |
| Cfr10I | RCCGGY | 1 cut(s) | 1387 |
| Cfr13I | GGNCC | 3 cut(s) | 959, 1804, 1926 |
| Cfr9I | CCCGGG | 1 cut(s) | 1965 |
| CviAII | CATG | 9 cut(s) | 269, 374, 437, 679, 730, 749, 1100, 1349, 1792 |
| DdeI | CTNAG | 9 cut(s) | 246, 694, 1134, 1157, 1446, 1473, 1797, 1884, 1893 |
| DraI | TTTAAA | 3 cut(s) | 109, 514, 991 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 173, 1634 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1149 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 173, 1634 |
| EaeI | YGGCCR | 1 cut(s) | 192 |
| Eam1104I | CTCTTC | 3 cut(s) | 53, 639, 1528 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1149 |
| EarI | CTCTTC | 3 cut(s) | 53, 639, 1528 |
| Ecl136II | GAGCTC | 2 cut(s) | 391, 1519 |
| Eco130I | CCWWGG | 2 cut(s) | 331, 807 |
| Eco24I | GRGCYC | 2 cut(s) | 393, 1521 |
| Eco32I | GATATC | 1 cut(s) | 1140 |
| Eco47I | GGWCC | 2 cut(s) | 1804, 1926 |
| Eco53kI | GAGCTC | 2 cut(s) | 391, 1519 |
| Eco57I | CTGAAG | 1 cut(s) | 1166 |
| Eco81I | CCTNAGG | 1 cut(s) | 246 |
| Eco88I | CYCGRG | 4 cut(s) | 1427, 1682, 1730, 1965 |
| Eco91I | GGTNACC | 1 cut(s) | 841 |
| EcoICRI | GAGCTC | 2 cut(s) | 391, 1519 |
| EcoO65I | GGTNACC | 1 cut(s) | 841 |
| EcoRI | GAATTC | 2 cut(s) | 187, 1124 |
| EcoRII | CCWGG | 3 cut(s) | 771, 1060, 1767 |
| EcoRV | GATATC | 1 cut(s) | 1140 |
| EcoT14I | CCWWGG | 2 cut(s) | 331, 807 |
| EcoT22I | ATGCAT | 1 cut(s) | 726 |
| EcoT38I | GRGCYC | 2 cut(s) | 393, 1521 |
| ErhI | CCWWGG | 2 cut(s) | 331, 807 |
| FaeI | CATG | 9 cut(s) | 272, 377, 440, 682, 733, 752, 1103, 1352, 1795 |
| FaqI | GGGAC | 3 cut(s) | 161, 1507, 1561 |
| FatI | CATG | 9 cut(s) | 268, 373, 436, 678, 729, 748, 1099, 1348, 1791 |
| FauNDI | CATATG | 1 cut(s) | 148 |
| FbaI | TGATCA | 2 cut(s) | 322, 496 |
| FblI | GTMKAC | 1 cut(s) | 541 |
| Fnu4HI | GCNGC | 2 cut(s) | 754, 1829 |
| FriOI | GRGCYC | 2 cut(s) | 393, 1521 |
| Fsp4HI | GCNGC | 2 cut(s) | 754, 1829 |
| FspBI | CTAG | 6 cut(s) | 935, 1019, 1172, 1482, 1580, 1640 |
| GlaI | GCGC | 2 cut(s) | 265, 873 |
| GluI | GCNGC | 2 cut(s) | 754, 1829 |
| GsaI | CCCAGC | 2 cut(s) | 1494, 1666 |
| HaeII | RGCGCY | 1 cut(s) | 267 |
| HaeIII | GGCC | 4 cut(s) | 194, 278, 961, 1786 |
| HapII | CCGG | 3 cut(s) | 1388, 1514, 1966 |
| HhaI | GCGC | 2 cut(s) | 266, 874 |
| Hin1I | GRCGYC | 1 cut(s) | 1554 |
| Hin1II | CATG | 9 cut(s) | 272, 377, 440, 682, 733, 752, 1103, 1352, 1795 |
| Hin6I | GCGC | 2 cut(s) | 264, 872 |
| HinP1I | GCGC | 2 cut(s) | 264, 872 |
| HincII | GTYRAC | 2 cut(s) | 126, 1947 |
| HindII | GTYRAC | 2 cut(s) | 126, 1947 |
| HinfI | GANTC | 6 cut(s) | 336, 549, 1103, 1273, 1294, 1701 |
| HpaI | GTTAAC | 1 cut(s) | 1947 |
| HpaII | CCGG | 3 cut(s) | 1388, 1514, 1966 |
| HphI | GGTGA | 5 cut(s) | 583, 594, 651, 853, 1832 |
| Hpy166II | GTNNAC | 5 cut(s) | 126, 542, 1055, 1901, 1947 |
| Hpy188I | TCNGA | 8 cut(s) | 548, 831, 1069, 1476, 1627, 1874, 1885, 1894 |
| Hpy8I | GTNNAC | 5 cut(s) | 126, 542, 1055, 1901, 1947 |
| Hpy99I | CGWCG | 1 cut(s) | 1631 |
| HpyAV | CCTTC | 5 cut(s) | 169, 289, 497, 1573, 1861 |
| HpyCH4III | ACNGT | 1 cut(s) | 205 |
| HpyCH4IV | ACGT | 5 cut(s) | 122, 224, 1300, 1554, 1943 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 878, 1079, 1576, 1609 |
| HpyF3I | CTNAG | 9 cut(s) | 246, 694, 1134, 1157, 1446, 1473, 1797, 1884, 1893 |
| HpySE526I | ACGT | 5 cut(s) | 122, 224, 1300, 1554, 1943 |
| Hsp92I | GRCGYC | 1 cut(s) | 1554 |
| Hsp92II | CATG | 9 cut(s) | 272, 377, 440, 682, 733, 752, 1103, 1352, 1795 |
| HspAI | GCGC | 2 cut(s) | 264, 872 |
| KpnI | GGTACC | 1 cut(s) | 1938 |
| KroI | GCCGGC | 1 cut(s) | 1387 |
| KroNI | GCCGGC | 1 cut(s) | 1389 |
| Ksp22I | TGATCA | 2 cut(s) | 322, 496 |
| KspAI | GTTAAC | 1 cut(s) | 1947 |
| LguI | GCTCTTC | 1 cut(s) | 1528 |
| LmnI | GCTCC | 3 cut(s) | 388, 484, 1516 |
| Lsp1109I | GCAGC | 1 cut(s) | 1840 |
| LweI | GCATC | 3 cut(s) | 890, 1060, 1354 |
| MaeI | CTAG | 6 cut(s) | 935, 1019, 1172, 1482, 1580, 1640 |
| MaeII | ACGT | 5 cut(s) | 122, 224, 1300, 1554, 1943 |
| MaeIII | GTNAC | 7 cut(s) | 113, 205, 220, 550, 589, 841, 1706 |
| MboII | GAAGA | 6 cut(s) | 40, 220, 626, 1545, 1626, 1724 |
| MfeI | CAATTG | 1 cut(s) | 1146 |
| MflI | RGATCY | 5 cut(s) | 92, 517, 652, 948, 1809 |
| MhlI | GDGCHC | 3 cut(s) | 134, 393, 1521 |
| MlyI | GAGTC | 1 cut(s) | 558 |
| MmeI | TCCRAC | 1 cut(s) | 1650 |
| Mph1103I | ATGCAT | 1 cut(s) | 726 |
| MroNI | GCCGGC | 1 cut(s) | 1387 |
| MslI | CAYNNNNRTG | 4 cut(s) | 147, 383, 683, 1657 |
| MspA1I | CMGCKG | 2 cut(s) | 98, 320 |
| MspI | CCGG | 3 cut(s) | 1388, 1514, 1966 |
| MspR9I | CCNGG | 5 cut(s) | 773, 1062, 1769, 1966, 1967 |
| MunI | CAATTG | 1 cut(s) | 1146 |
| Mva1269I | GAATGC | 2 cut(s) | 1122, 1423 |
| MvaI | CCWGG | 3 cut(s) | 773, 1062, 1769 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 878, 1079, 1576, 1609 |
| NaeI | GCCGGC | 1 cut(s) | 1389 |
| NciI | CCSGG | 2 cut(s) | 1966, 1967 |
| NdeI | CATATG | 1 cut(s) | 148 |
| NgoMIV | GCCGGC | 1 cut(s) | 1387 |
| NlaIII | CATG | 9 cut(s) | 272, 377, 440, 682, 733, 752, 1103, 1352, 1795 |
| NlaIV | GGNNCC | 5 cut(s) | 94, 313, 1927, 1936, 1953 |
| NmuCI | GTSAC | 5 cut(s) | 220, 550, 589, 841, 1706 |
| NsiI | ATGCAT | 1 cut(s) | 726 |
| NspI | RCATGY | 3 cut(s) | 682, 733, 1795 |
| PaeR7I | CTCGAG | 2 cut(s) | 1682, 1730 |
| PagI | TCATGA | 1 cut(s) | 1348 |
| PciI | ACATGT | 3 cut(s) | 678, 729, 1791 |
| PciSI | GCTCTTC | 1 cut(s) | 1528 |
| PctI | GAATGC | 4 cut(s) | 306, 1122, 1423, 1426 |
| PdiI | GCCGGC | 1 cut(s) | 1389 |
| PfeI | GAWTC | 5 cut(s) | 336, 1103, 1273, 1294, 1701 |
| PflFI | GACNNNGTC | 1 cut(s) | 1631 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1813 |
| PkrI | GCNGC | 2 cut(s) | 755, 1830 |
| PleI | GAGTC | 1 cut(s) | 557 |
| PpsI | GAGTC | 1 cut(s) | 557 |
| PscI | ACATGT | 3 cut(s) | 678, 729, 1791 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1553 |
| Psp124BI | GAGCTC | 2 cut(s) | 393, 1521 |
| Psp1406I | AACGTT | 1 cut(s) | 1300 |
| Psp6I | CCWGG | 3 cut(s) | 771, 1060, 1767 |
| PspEI | GGTNACC | 1 cut(s) | 841 |
| PspFI | CCCAGC | 2 cut(s) | 1490, 1662 |
| PspGI | CCWGG | 3 cut(s) | 771, 1060, 1767 |
| PspN4I | GGNNCC | 5 cut(s) | 94, 313, 1927, 1936, 1953 |
| PspPI | GGNCC | 3 cut(s) | 959, 1804, 1926 |
| PspXI | VCTCGAGB | 1 cut(s) | 1730 |
| PstI | CTGCAG | 1 cut(s) | 1830 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1067 |
| PsuI | RGATCY | 5 cut(s) | 92, 517, 652, 948, 1809 |
| PsyI | GACNNNGTC | 1 cut(s) | 1631 |
| RseI | CAYNNNNRTG | 4 cut(s) | 147, 383, 683, 1657 |
| SacI | GAGCTC | 2 cut(s) | 393, 1521 |
| SapI | GCTCTTC | 1 cut(s) | 1528 |
| SatI | GCNGC | 2 cut(s) | 754, 1829 |
| Sau96I | GGNCC | 3 cut(s) | 959, 1804, 1926 |
| SchI | GAGTC | 1 cut(s) | 558 |
| ScrFI | CCNGG | 5 cut(s) | 773, 1062, 1769, 1966, 1967 |
| SduI | GDGCHC | 3 cut(s) | 134, 393, 1521 |
| SfaNI | GCATC | 3 cut(s) | 890, 1060, 1354 |
| SfcI | CTRYAG | 3 cut(s) | 904, 1773, 1826 |
| Sfr274I | CTCGAG | 2 cut(s) | 1682, 1730 |
| SinI | GGWCC | 2 cut(s) | 1804, 1926 |
| SlaI | CTCGAG | 2 cut(s) | 1682, 1730 |
| SmaI | CCCGGG | 1 cut(s) | 1967 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 147, 383, 683, 1657 |
| SmlI | CTYRAG | 2 cut(s) | 1682, 1730 |
| SmoI | CTYRAG | 2 cut(s) | 1682, 1730 |
| SsiI | CCGC | 5 cut(s) | 96, 318, 753, 1530, 1593 |
| SspMI | CTAG | 6 cut(s) | 935, 1019, 1172, 1482, 1580, 1640 |
| SstI | GAGCTC | 2 cut(s) | 393, 1521 |
| StyD4I | CCNGG | 5 cut(s) | 771, 1060, 1767, 1964, 1965 |
| StyI | CCWWGG | 2 cut(s) | 331, 807 |
| TaaI | ACNGT | 1 cut(s) | 205 |
| TaiI | ACGT | 5 cut(s) | 125, 227, 1303, 1557, 1946 |
| TaqI | TCGA | 7 cut(s) | 162, 393, 1142, 1375, 1683, 1731, 1848 |
| TatI | WGTACW | 3 cut(s) | 56, 745, 1900 |
| TauI | GCSGC | 1 cut(s) | 756 |
| TfiI | GAWTC | 5 cut(s) | 336, 1103, 1273, 1294, 1701 |
| TseFI | GTSAC | 5 cut(s) | 220, 550, 589, 841, 1706 |
| TseI | GCWGC | 1 cut(s) | 1828 |
| Tsp45I | GTSAC | 5 cut(s) | 220, 550, 589, 841, 1706 |
| TspDTI | ATGAA | 4 cut(s) | 630, 1361, 1365, 1430 |
| TspGWI | ACGGA | 4 cut(s) | 471, 1686, 1694, 1964 |
| TspMI | CCCGGG | 1 cut(s) | 1965 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1631 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1813 |
| VpaK11BI | GGWCC | 2 cut(s) | 1804, 1926 |
| XapI | RAATTY | 5 cut(s) | 187, 413, 473, 1092, 1124 |
| XbaI | TCTAGA | 2 cut(s) | 934, 1481 |
| XceI | RCATGY | 3 cut(s) | 682, 733, 1795 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 853, 1814 |
| XhoI | CTCGAG | 2 cut(s) | 1682, 1730 |
| XmaI | CCCGGG | 1 cut(s) | 1965 |
| XmiI | GTMKAC | 1 cut(s) | 541 |
| XspI | CTAG | 6 cut(s) | 935, 1019, 1172, 1482, 1580, 1640 |
| ZraI | GACGTC | 1 cut(s) | 1555 |
| Zsp2I | ATGCAT | 1 cut(s) | 726 |