AT3G59700

defense response to oomycetes

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
22052121 .. 22054394
2274 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59700.1

Sequence Viewer

Length: 1986 bp
ATGTCTCGTGAACTTATTATTCTCTGCCAACCAATTCTTGTTCTGTTCCTTACTCTGTTTTACAATTCTCATGGCTACTTCGTCTCACAAGGATCTGTAGGAATCGGCTTCAACGGTTACTTCACTTTAACCAACACCACAAAACACACATTCGGTCAAGCTTTCGAAAACGAGCACGTTGAAATCAAGAACTCATCGACAGGTGTCATCTCATCTTTCTCAGTCAACTTCTTCTTTGCGATCGTCCCTGAACATAACCAGCAAGGCTCACACGGTATGACTTTCGTCATCTCTCCCACAAGAGGCCTTCCCGGAGCTTCCTCCGATCAATACCTCGGAATCTTTAACAAAACAAACAACGGTAAAGCCTCGAATAACGTTATAGCTATCGAGTTAGATATTCATAAAGACGAAGAGTTTGGAGATATTGATGATAATCATGTTGGGATTAATATTAACGGTTTGAGATCTGTTGCCTCTGCTTCTGCTGGTTACTATGATGATAAAGATGGAAGCTTTAAAAAACTTTCTTTGATCAGCAGAGAGGTAATGAGGCTTTCCATCGTTTATAGTCAACCTGATCAACAGCTCAATGTTACTTTATTCCCTGCTGAGATCCCTGTTCCGCCACTAAAACCGCTCTTGTCTTTGAACCGAGATCTCTCGCCGTATTTGCTTGAGAAAATGTATCTTGGATTCACTGCATCGACGGGGTCAGTTGGAGCAATTCATTACTTGATGGGTTGGTTAGTTAATGGTGTAATCGAGTATCCGAGATTGGAGCTTAGTATACCAGTCCTTCCTCCATATCCAAAGAAAACATCTAATAGAACGAAAACTGTTTTAGCCGTCTGCTTAACGGTATCTGTGTTTGCTGCGTTTGTCGCTTCGTGGATCGGTTTCGTCTTCTATTTGAGGCATAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGAGATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTTCAAGGAGAAACAACTTCTTGGTAAAGGAGGCTTTGGTCAAGTCTATAAAGGAACACTTCCGGGTTCTGATGCAGAGATCGCTGTGAAGCGGACTTCTCATGATTCAAGACAAGGGATGAGCGAGTTTCTAGCCGAGATATCGACCATTGGTCGTCTCAGACATCCAAATTTAGTCAGGCTTTTAGGATACTGTAGGCATAAAGAGAATCTCTACTTGGTGTATGACTATATGCCTAATGGAAGCCTTGACAAGTATCTAAACCGTAGCGAGAATCAAGAACGGCTTACTTGGGAACAACGTTTCAGGATCATCAAAGATGTTGCAACTGCTCTACTACACCTGCATCAAGAATGGGTACAAGTCATCATTCATCGAGATATCAAACCAGCTAATGTTTTAATCGACAATGAAATGAATGCGAGGCTCGGGGATTTCGGACTGGCGAAACTGTATGATCAGGGATTCGATCCTGAAACATCTAAAGTAGCGGGAACATTCGGATATATCGCACCAGAGTTTCTAAGAACAGGAAGAGCAACCACAAGCACTGATGTTTACGCCTTTGGGTTGGTAATGCTTGAAGTAGTGTGTGGTAGAAGGATAATTGAGAGACGTGCAGCAGAAAATGAAGAATATCTTGTGGATTGGATCTTAGAGCTTTGGGAAAATGGGAAAATTTTCGATGCAGCAGAGGAAAGTATACGTCAAGAACAAAACAGGGGACAAGTTGAGCTTGTTTTGAAGCTAGGTGTGTTGTGTTCGCATCAAGCTGCATCGATAAGACCGGCTATGAGTGTGGTAATGAGGATTTTGAATGGAGTTTCACAGCTACCAGATAATCTTCTTGATGTTGTAAGGGCTGAGAAATTTAGAGAATGGCCTGAGACATCAATGGAATTACTACTACTTGATGTGAATACATCGAGTTCATTGGAGTTAACCGACTCTTCTTTTGTCTCCCACGGCCGCTGA

Protein Analysis

661

Amino Acids

74.44

Weight (kDa)

6.25

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 35 - 250 6.8e-57 Legume lectin domain
Pkinase PF00069 338 - 547 3.7e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 341 - 607 5.6e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 984
AarI CACCTGC 1 cut(s) 1362
Acc36I ACCTGC 1 cut(s) 1362
AccBSI CCGCTC 1 cut(s) 640
AccI GTMKAC 2 cut(s) 790, 1714
AciI CCGC 5 cut(s) 626, 638, 1102, 1502, 1981
AclI AACGTT 2 cut(s) 378, 1312
AclWI GGATC 6 cut(s) 100, 610, 902, 1328, 1475, 1670
AcoI YGGCCR 1 cut(s) 1978
AcsI RAATTY 3 cut(s) 1180, 1689, 1880
AfaI GTAC 1 cut(s) 1371
AfiI CCNNNNNNNGG 1 cut(s) 302
AhdI GACNNNNNGTC 1 cut(s) 1161
AjiI CACGTC 1 cut(s) 1628
AjuI GAANNNNNNNTTGG 2 cut(s) 1211, 1243
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 6 cut(s) 9, 88, 1172, 1618, 1892, 1975
AlwI GGATC 6 cut(s) 100, 610, 902, 1328, 1475, 1670
Ama87I CYCGRG 1 cut(s) 1439
AoxI GGCC 3 cut(s) 304, 1892, 1978
ApeKI GCWGC 4 cut(s) 875, 1631, 1700, 1784
ApoI RAATTY 3 cut(s) 1180, 1689, 1880
ArsI GACNNNNNNTTYG 4 cut(s) 401, 433, 1949, 1981
AseI ATTAAT 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 1691
AspS9I GGNCC 1 cut(s) 965
AsuC2I CCSGG 2 cut(s) 312, 1074
AsuII TTCGAA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 1439
AvaII GGWCC 1 cut(s) 965
BauI CACGAG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 898
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 4 cut(s) 862, 1643, 1712, 1771
BccI CCATC 3 cut(s) 503, 569, 733
BceAI ACGGC 3 cut(s) 652, 833, 1310
BciVI GTATCC 2 cut(s) 780, 1193
BclI TGATCA 3 cut(s) 534, 580, 1468
BcnI CCSGG 2 cut(s) 312, 1074
BcoDI GTCTC 6 cut(s) 9, 88, 1172, 1618, 1892, 1975
BfaI CTAG 2 cut(s) 1142, 1760
BfmI CTRYAG 2 cut(s) 96, 1204
BfuAI ACCTGC 1 cut(s) 1362
BfuI GTATCC 2 cut(s) 780, 1193
BglII AGATCT 2 cut(s) 467, 658
BisI GCNGC 5 cut(s) 876, 1632, 1701, 1785, 1981
BlsI GCNGC 5 cut(s) 877, 1633, 1702, 1786, 1982
Bme1390I CCNGG 2 cut(s) 312, 1074
Bme18I GGWCC 1 cut(s) 965
BmeRI GACNNNNNGTC 1 cut(s) 1161
BmeT110I CYCGRG 1 cut(s) 1439
BmgBI CACGTC 1 cut(s) 1628
BmgT120I GGNCC 1 cut(s) 965
BmrFI CCNGG 2 cut(s) 312, 1074
BmsI GCATC 6 cut(s) 713, 1072, 1366, 1687, 1786, 1796
BoxI GACNNNNGTC 2 cut(s) 203, 284
BpiI GAAGAC 1 cut(s) 898
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 2 cut(s) 312, 1074
Bsa29I ATCGAT 1 cut(s) 1790
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 334, 1975
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 1798
Bse1I ACTGG 2 cut(s) 794, 1458
Bse8I GATNNNNATC 1 cut(s) 435
BseCI ATCGAT 1 cut(s) 1790
BseDI CCNNGG 2 cut(s) 334, 1975
BseGI GGATG 2 cut(s) 1134, 1174
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 5 cut(s) 234, 603, 1183, 1866, 1887
BseNI ACTGG 2 cut(s) 794, 1458
BseX3I CGGCCG 1 cut(s) 1978
BseXI GCAGC 4 cut(s) 862, 1643, 1712, 1771
BsgI GTGCAG 1 cut(s) 1650
Bsh1285I CGRYCG 2 cut(s) 243, 1981
BshFI GGCC 3 cut(s) 306, 1894, 1980
BshVI ATCGAT 1 cut(s) 1790
BsiEI CGRYCG 2 cut(s) 243, 1981
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 1439
BsiSI CCGG 3 cut(s) 312, 1073, 1799
BslFI GGGAC 2 cut(s) 230, 1749
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 6 cut(s) 9, 88, 1172, 1618, 1892, 1975
BsmBI CGTCTC 3 cut(s) 88, 1172, 1618
BsmFI GGGAC 2 cut(s) 230, 1749
BsmI GAATGC 1 cut(s) 1435
BsnI GGCC 3 cut(s) 306, 1894, 1980
BsoBI CYCGRG 1 cut(s) 1439
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 5 cut(s) 626, 638, 1102, 1502, 1981
BspANI GGCC 3 cut(s) 306, 1894, 1980
BspCNI CTCAG 5 cut(s) 233, 604, 1182, 1867, 1888
BspDI ATCGAT 1 cut(s) 1790
BspHI TCATGA 1 cut(s) 1111
BspMI ACCTGC 1 cut(s) 1362
BspPI GGATC 6 cut(s) 100, 610, 902, 1328, 1475, 1670
BspQI GCTCTTC 1 cut(s) 1540
BspT104I TTCGAA 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 1798
BsrI ACTGG 2 cut(s) 794, 1458
BssAI RCCGGY 1 cut(s) 1798
BssECI CCNNGG 2 cut(s) 334, 1975
BssNAI GTATAC 2 cut(s) 791, 1715
BssSI CACGAG 1 cut(s) 6
Bst1107I GTATAC 2 cut(s) 791, 1715
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 9 cut(s) 116, 275, 362, 461, 841, 862, 1205, 1277, 1464
Bst6I CTCTTC 3 cut(s) 408, 1540, 1966
BstBI TTCGAA 1 cut(s) 165
BstDEI CTNAG 8 cut(s) 220, 612, 785, 1169, 1535, 1666, 1875, 1896
BstDSI CCRYGG 1 cut(s) 1975
BstF5I GGATG 2 cut(s) 1134, 1174
BstMAI GTCTC 6 cut(s) 9, 88, 1172, 1618, 1892, 1975
BstMCI CGRYCG 2 cut(s) 243, 1981
BstMWI GCNNNNNNNGC 3 cut(s) 673, 884, 1091
BstPAI GACNNNNGTC 2 cut(s) 203, 284
BstSCI CCNGG 2 cut(s) 310, 1072
BstSFI CTRYAG 2 cut(s) 96, 1204
BstV1I GCAGC 4 cut(s) 862, 1643, 1712, 1771
BstV2I GAAGAC 1 cut(s) 898
BstX2I RGATCY 5 cut(s) 92, 467, 615, 658, 1662
BstYI RGATCY 5 cut(s) 92, 467, 615, 658, 1662
BstZ17I GTATAC 2 cut(s) 791, 1715
BstZI CGGCCG 1 cut(s) 1978
Bsu15I ATCGAT 1 cut(s) 1790
BsuI GTATCC 2 cut(s) 780, 1193
BsuRI GGCC 3 cut(s) 306, 1894, 1980
BsuTUI ATCGAT 1 cut(s) 1790
BtgI CCRYGG 1 cut(s) 1975
BtrI CACGTC 1 cut(s) 1628
BtsCI GGATG 2 cut(s) 1134, 1174
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 2 cut(s) 699, 1560
BveI ACCTGC 1 cut(s) 1362
CciI TCATGA 1 cut(s) 1111
Cfr10I RCCGGY 1 cut(s) 1798
Cfr13I GGNCC 1 cut(s) 965
ClaI ATCGAT 1 cut(s) 1790
Csp6I GTAC 1 cut(s) 1370
CviAII CATG 3 cut(s) 71, 440, 1112
CviQI GTAC 1 cut(s) 1370
DdeI CTNAG 8 cut(s) 220, 612, 785, 1169, 1535, 1666, 1875, 1896
DraI TTTAAA 1 cut(s) 520
DriI GACNNNNNGTC 1 cut(s) 1161
EaeI YGGCCR 1 cut(s) 1978
EagI CGGCCG 1 cut(s) 1978
Eam1104I CTCTTC 3 cut(s) 408, 1540, 1966
Eam1105I GACNNNNNGTC 1 cut(s) 1161
EarI CTCTTC 3 cut(s) 408, 1540, 1966
EciI GGCGGA 1 cut(s) 615
EclXI CGGCCG 1 cut(s) 1978
Eco147I AGGCCT 1 cut(s) 306
Eco32I GATATC 2 cut(s) 1152, 1393
Eco47I GGWCC 1 cut(s) 965
Eco52I CGGCCG 1 cut(s) 1978
Eco88I CYCGRG 1 cut(s) 1439
EcoRV GATATC 2 cut(s) 1152, 1393
Esp3I CGTCTC 3 cut(s) 88, 1172, 1618
FaeI CATG 3 cut(s) 74, 443, 1115
FaqI GGGAC 2 cut(s) 230, 1749
FatI CATG 3 cut(s) 70, 439, 1111
FauI CCCGC 1 cut(s) 1495
FbaI TGATCA 3 cut(s) 534, 580, 1468
FblI GTMKAC 2 cut(s) 790, 1714
Fnu4HI GCNGC 5 cut(s) 876, 1632, 1701, 1785, 1981
FokI GGATG 2 cut(s) 1141, 1161
Fsp4HI GCNGC 5 cut(s) 876, 1632, 1701, 1785, 1981
FspBI CTAG 2 cut(s) 1142, 1760
GluI GCNGC 5 cut(s) 876, 1632, 1701, 1785, 1981
HaeIII GGCC 3 cut(s) 306, 1894, 1980
HapII CCGG 3 cut(s) 312, 1073, 1799
Hin1II CATG 3 cut(s) 74, 443, 1115
HincII GTYRAC 3 cut(s) 226, 575, 1953
HindII GTYRAC 3 cut(s) 226, 575, 1953
HindIII AAGCTT 2 cut(s) 159, 514
HinfI GANTC 9 cut(s) 102, 339, 696, 955, 1115, 1219, 1285, 1476, 1958
HpaI GTTAAC 1 cut(s) 1953
HpaII CCGG 3 cut(s) 312, 1073, 1799
Hpy166II GTNNAC 7 cut(s) 11, 226, 575, 791, 1570, 1715, 1953
Hpy188I TCNGA 7 cut(s) 325, 338, 774, 1081, 1172, 1451, 1514
Hpy8I GTNNAC 7 cut(s) 11, 226, 575, 791, 1570, 1715, 1953
Hpy99I CGWCG 1 cut(s) 712
HpyAV CCTTC 4 cut(s) 317, 809, 919, 1605
HpyCH4III ACNGT 9 cut(s) 116, 275, 362, 461, 841, 862, 1205, 1277, 1464
HpyCH4IV ACGT 5 cut(s) 177, 378, 1312, 1627, 1717
HpyCH4V TGCA 7 cut(s) 704, 1085, 1337, 1357, 1631, 1700, 1787
HpyF10VI GCNNNNNNNGC 3 cut(s) 673, 884, 1091
HpyF3I CTNAG 8 cut(s) 220, 612, 785, 1169, 1535, 1666, 1875, 1896
HpySE526I ACGT 5 cut(s) 177, 378, 1312, 1627, 1717
Hsp92II CATG 3 cut(s) 74, 443, 1115
Ksp22I TGATCA 3 cut(s) 534, 580, 1468
KspAI GTTAAC 1 cut(s) 1953
LguI GCTCTTC 1 cut(s) 1540
LmnI GCTCC 4 cut(s) 314, 722, 781, 988
Lsp1109I GCAGC 4 cut(s) 862, 1643, 1712, 1771
LweI GCATC 6 cut(s) 713, 1072, 1366, 1687, 1786, 1796
MaeI CTAG 2 cut(s) 1142, 1760
MaeII ACGT 5 cut(s) 177, 378, 1312, 1627, 1717
MaeIII GTNAC 3 cut(s) 116, 491, 595
MbiI CCGCTC 1 cut(s) 640
MboII GAAGA 8 cut(s) 223, 425, 898, 956, 1557, 1655, 1847, 1953
MflI RGATCY 5 cut(s) 92, 467, 615, 658, 1662
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 8 cut(s) 33, 64, 726, 1180, 1617, 1689, 1880, 1910
MlyI GAGTC 1 cut(s) 1952
MmeI TCCRAC 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 1691
MspA1I CMGCKG 1 cut(s) 1983
MspI CCGG 3 cut(s) 312, 1073, 1799
MspR9I CCNGG 2 cut(s) 312, 1074
Mva1269I GAATGC 1 cut(s) 1435
MwoI GCNNNNNNNGC 3 cut(s) 673, 884, 1091
NciI CCSGG 2 cut(s) 312, 1074
NlaIII CATG 3 cut(s) 74, 443, 1115
NmeAIII GCCGAG 1 cut(s) 1171
NspV TTCGAA 1 cut(s) 165
PagI TCATGA 1 cut(s) 1111
PaqCI CACCTGC 1 cut(s) 1362
PceI AGGCCT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 1540
PctI GAATGC 1 cut(s) 1435
PdmI GAANNNNTTC 1 cut(s) 1691
PfeI GAWTC 8 cut(s) 102, 339, 696, 955, 1115, 1219, 1285, 1476
PflFI GACNNNGTC 1 cut(s) 712
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 5 cut(s) 877, 1633, 1702, 1786, 1982
Ple19I CGATCG 1 cut(s) 243
PleI GAGTC 1 cut(s) 1952
PpsI GAGTC 1 cut(s) 1952
PshAI GACNNNNGTC 2 cut(s) 203, 284
PshBI ATTAAT 1 cut(s) 450
PsiI TTATAA 1 cut(s) 984
Psp1406I AACGTT 2 cut(s) 378, 1312
PspPI GGNCC 1 cut(s) 965
PsuI RGATCY 5 cut(s) 92, 467, 615, 658, 1662
PsyI GACNNNGTC 1 cut(s) 712
PvuI CGATCG 1 cut(s) 243
RsaI GTAC 1 cut(s) 1371
RsaNI GTAC 1 cut(s) 1370
SapI GCTCTTC 1 cut(s) 1540
SatI GCNGC 5 cut(s) 876, 1632, 1701, 1785, 1981
Sau96I GGNCC 1 cut(s) 965
SchI GAGTC 1 cut(s) 1952
ScrFI CCNGG 2 cut(s) 312, 1074
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 6 cut(s) 713, 1072, 1366, 1687, 1786, 1796
SfcI CTRYAG 2 cut(s) 96, 1204
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 965
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 8 cut(s) 33, 64, 726, 1180, 1617, 1689, 1880, 1910
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 5 cut(s) 626, 638, 1102, 1502, 1981
SspI AATATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 1142, 1760
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 310, 1072
TaaI ACNGT 9 cut(s) 116, 275, 362, 461, 841, 862, 1205, 1277, 1464
TaiI ACGT 5 cut(s) 180, 381, 1315, 1630, 1720
TaqII GACCGA 1 cut(s) 143
TasI AATT 8 cut(s) 33, 64, 726, 1180, 1617, 1689, 1880, 1910
TauI GCSGC 1 cut(s) 1983
TfiI GAWTC 8 cut(s) 102, 339, 696, 955, 1115, 1219, 1285, 1476
TscAI CASTG 2 cut(s) 706, 1567
TseI GCWGC 4 cut(s) 875, 1631, 1700, 1784
TspDTI ATGAA 7 cut(s) 392, 719, 1373, 1437, 1442, 1656, 1932
TspRI CASTG 2 cut(s) 706, 1567
Tth111I GACNNNGTC 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 965
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 3 cut(s) 1180, 1689, 1880
XmiI GTMKAC 2 cut(s) 790, 1714
XmnI GAANNNNTTC 1 cut(s) 1691
XspI CTAG 2 cut(s) 1142, 1760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.