AT2G43880
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017889
Physical Location & Seq
Forward (+)
18172889 .. 18174705
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43880.2

Sequence Viewer

Length: 1185 bp
ATGGCCAACAACATCTCCTTTCCTTGCGCCATCATATTTTTCTCTATCAATATTTTCTTCTTAATCAAGTCATCACACGCAATGCCATCGTTTAACGTCCAAAGGTACGGAGCTAGAGGTGATGGGAGAGCAGATGCGACCAAGTCCTTTTTGACAGCTTGGTCATTAGCCTGCGGCTCACGGGCTCGAGCCATGGTCTACGTTCCCCGTGGAACATATTTGGTCAAAAACCTAGTCTTTTGGGGTCCTTGCAAGAACATTATAACTTTCAAAAACGATGGAACACTCGTGGCTCCAGCGAACTACTGGGATATAGGTAATTCCGGTTATTGGATTCTTTTCGCTAAAGTAAACCGGATCTCGGTTTACGGTGGCACCATTGATGCTAGAGGAGCTGGTTATTGGTCTTGTAGAAAGAAAGGTAGTCATTGTCCTCAAGGTGCAAGGTCTATATCGTTCAGCTGGTGCAATAACGTTCTACTAAGTGGTCTATCGTCGTTTAATAGCCAGAATATGCACGTCACGGTTCATCATTCTTCTAATGTTCGGATTGAAAACGTAAGAATTAGGGCTCCAAGTGGAAGCCCTAACACCGATGGTATCCACGTACAGTCTTCTTCTGGAGTCACCATTAGTGGCGGAACCATTGCGACCGGTGATGACTGCATTGCACTTAGTCAAGGATCTAGGAACATTTGGATCGAACGTGTCAATTGTGGACCGGGACATGGAATCAGCATTGGGAGTCTTGGGGATTACGCTAATGAGGAAGGTGTGCAAAATGTAACCGTTACGAGCTCTGTTTTCACCAAGACGCAGAACGGAGTAAGAATAAAGACATGGGCTAGGCCTAGCAGAGGGTTTGTGAATAATGTGGTATTTCGAAATTTGATAATGAATAATGTTGAAAATCCGGTGATAATCGATCAAAACTATTGTCCTAATGGAAAAGGTTGTCCTCGCCAGAGCTCTGGAGTGAAGATAAGTGGAGTGACTTTTGCAAACATAAAGGGGACATCAACAACACCAATAGCAATGAAGTTGGATTGTAGTGGAAGCAATCATTGCACAGGGCTTAGGTTACAAGACATTAAGCTTACTTACATGAGAAGATCATCAGCTTCTTATTGTAGGAACGCCCATGGACGAGCCTCTGGAGTTATGGTTCCAAGGAATTGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

394

Amino Acids

42.74

Weight (kDa)

9.84

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 31 - 77 4.4e-08 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 58 - 322 1.3e-74 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43880 AT2G43880
fragaria_vesca FvH4_1g00270
malus_domestica MD15G1143900.v1.1
prunus_persica Prupe.7G269300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084571
rosa_laevigata RLG00000015628
rosa_multiflora Rmu_sc0002352.1_g000018
rosa_rugosa Rorug01G0455100
rosa_samantha Rh2CG003300
rosa_wichuraiana Rw2G000290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AasI GACNNNNNNGTC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 198
AciI CCGC 2 cut(s) 174, 639
AclI AACGTT 1 cut(s) 474
AclWI GGATC 3 cut(s) 365, 691, 707
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 886
AfaI GTAC 2 cut(s) 107, 609
AfiI CCNNNNNNNGG 4 cut(s) 330, 361, 728, 857
AflIII ACRYGT 1 cut(s) 706
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 3 cut(s) 271, 554, 908
AjiI CACGTC 1 cut(s) 520
AloI GAACNNNNNNTCC 2 cut(s) 1149, 1181
AluBI AGCT 8 cut(s) 113, 158, 395, 462, 798, 969, 1096, 1121
AluI AGCT 8 cut(s) 113, 158, 395, 462, 798, 969, 1096, 1121
Alw21I GWGCWC 2 cut(s) 800, 971
AlwI GGATC 3 cut(s) 365, 691, 707
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 2 cut(s) 3, 848
ApoI RAATTY 1 cut(s) 886
ArsI GACNNNNNNTTYG 4 cut(s) 219, 251, 922, 954
AsiGI ACCGGT 1 cut(s) 653
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 245, 719
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 5 cut(s) 131, 619, 668, 799, 928
AsuII TTCGAA 1 cut(s) 883
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 2 cut(s) 245, 719
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 4 cut(s) 187, 574, 800, 971
BauI CACGAG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 800, 971
BccI CCATC 5 cut(s) 38, 94, 116, 272, 590
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciVI GTATCC 1 cut(s) 611
BcnI CCSGG 1 cut(s) 723
BfaI CTAG 6 cut(s) 114, 233, 387, 687, 846, 852
BfuI GTATCC 1 cut(s) 611
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 723
Bme18I GGWCC 2 cut(s) 245, 719
BmeT110I CYCGRG 1 cut(s) 186
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 2 cut(s) 245, 719
BmiI GGNNCC 6 cut(s) 246, 294, 376, 573, 643, 1167
BmrFI CCNGG 1 cut(s) 723
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 124, 373
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 606
BpmI CTGGAG 4 cut(s) 279, 642, 993, 1176
Bpu10I CCTNAGC 1 cut(s) 1076
Bpu14I TTCGAA 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 723
Bsa29I ATCGAT 1 cut(s) 924
BsaAI YACGTR 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 192, 208, 1141, 1169
BsaWI WCCGGW 4 cut(s) 323, 354, 653, 913
BsaXI ACNNNNNCTCC 3 cut(s) 29, 1149, 1179
Bsc4I CCNNNNNNNGG 4 cut(s) 330, 361, 728, 857
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 5 cut(s) 87, 645, 666, 1041, 1063
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 4 cut(s) 192, 208, 1141, 1169
BseLI CCNNNNNNNGG 4 cut(s) 330, 361, 728, 857
BseMI GCAATG 5 cut(s) 87, 645, 666, 1041, 1063
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 2 cut(s) 5, 850
BshNI GGYRCC 1 cut(s) 374
BshTI ACCGGT 1 cut(s) 653
BshVI ATCGAT 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 654
BsiHKAI GWGCWC 2 cut(s) 800, 971
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 5 cut(s) 324, 355, 654, 722, 914
BslFI GGGAC 2 cut(s) 738, 1027
BslI CCNNNNNNNGG 4 cut(s) 330, 361, 728, 857
BsmFI GGGAC 2 cut(s) 738, 1027
BsnI GGCC 2 cut(s) 5, 850
BsoBI CYCGRG 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 883
Bsp1286I GDGCHC 4 cut(s) 187, 574, 800, 971
Bsp143I GATC 5 cut(s) 357, 683, 699, 925, 1112
Bsp19I CCATGG 2 cut(s) 192, 1141
BspACI CCGC 2 cut(s) 174, 639
BspANI GGCC 2 cut(s) 5, 850
BspDI ATCGAT 1 cut(s) 924
BspLI GGNNCC 6 cut(s) 246, 294, 376, 573, 643, 1167
BspPI GGATC 3 cut(s) 365, 691, 707
BspT104I TTCGAA 1 cut(s) 883
BspT107I GGYRCC 1 cut(s) 374
BsrDI GCAATG 5 cut(s) 87, 645, 666, 1041, 1063
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 4 cut(s) 192, 208, 1141, 1169
BssMI GATC 5 cut(s) 357, 683, 699, 925, 1112
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 3 cut(s) 192, 1141, 1169
Bst2BI CACGAG 1 cut(s) 287
Bst4CI ACNGT 4 cut(s) 371, 526, 612, 790
BstAPI GCANNNNNTGC 1 cut(s) 1065
BstBAI YACGTR 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 883
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 482, 674, 1076
BstDSI CCRYGG 3 cut(s) 192, 208, 1141
BstENI CCTNNNNNAGG 1 cut(s) 855
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 5 cut(s) 360, 686, 702, 928, 1115
BstMBI GATC 5 cut(s) 357, 683, 699, 925, 1112
BstMCI CGRYCG 1 cut(s) 654
BstMWI GCNNNNNNNGC 2 cut(s) 392, 1065
BstSCI CCNGG 1 cut(s) 721
BstV2I GAAGAC 1 cut(s) 606
BstX2I RGATCY 2 cut(s) 357, 683
BstXI CCANNNNNNTGG 1 cut(s) 971
BstYI RGATCY 2 cut(s) 357, 683
Bsu15I ATCGAT 1 cut(s) 924
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 5, 850
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 3 cut(s) 192, 208, 1141
BtrI CACGTC 1 cut(s) 520
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 2 cut(s) 245, 719
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 823
Csp6I GTAC 2 cut(s) 106, 608
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 5 cut(s) 193, 728, 840, 1105, 1142
CviQI GTAC 2 cut(s) 106, 608
DdeI CTNAG 3 cut(s) 482, 674, 1076
DpnI GATC 5 cut(s) 359, 685, 701, 927, 1114
DpnII GATC 5 cut(s) 357, 683, 699, 925, 1112
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 654
Ecl136II GAGCTC 2 cut(s) 798, 969
Eco130I CCWWGG 3 cut(s) 192, 1141, 1169
Eco147I AGGCCT 1 cut(s) 850
Eco24I GRGCYC 4 cut(s) 187, 574, 800, 971
Eco47I GGWCC 2 cut(s) 245, 719
Eco53kI GAGCTC 2 cut(s) 798, 969
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 2 cut(s) 798, 969
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoO109I RGGNCCY 1 cut(s) 245
EcoT14I CCWWGG 3 cut(s) 192, 1141, 1169
EcoT38I GRGCYC 4 cut(s) 187, 574, 800, 971
ErhI CCWWGG 3 cut(s) 192, 1141, 1169
FaeI CATG 5 cut(s) 196, 731, 843, 1108, 1145
FaqI GGGAC 2 cut(s) 738, 1027
FatI CATG 5 cut(s) 192, 727, 839, 1104, 1141
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 175
FriOI GRGCYC 4 cut(s) 187, 574, 800, 971
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 6 cut(s) 114, 233, 387, 687, 846, 852
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 175
GsuI CTGGAG 4 cut(s) 279, 642, 993, 1176
HaeIII GGCC 2 cut(s) 5, 850
HapII CCGG 5 cut(s) 324, 355, 654, 722, 914
HgaI GACGC 1 cut(s) 823
HhaI GCGC 1 cut(s) 29
Hin1II CATG 5 cut(s) 196, 731, 843, 1108, 1145
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 4 cut(s) 334, 624, 732, 745
HpaII CCGG 5 cut(s) 324, 355, 654, 722, 914
HphI GGTGA 5 cut(s) 131, 619, 668, 799, 928
Hpy166II GTNNAC 4 cut(s) 199, 352, 367, 719
Hpy188I TCNGA 1 cut(s) 549
Hpy188III TCNNGA 3 cut(s) 621, 972, 1155
Hpy8I GTNNAC 4 cut(s) 199, 352, 367, 719
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 1 cut(s) 764
HpyCH4III ACNGT 4 cut(s) 371, 526, 612, 790
HpyCH4IV ACGT 7 cut(s) 96, 201, 474, 519, 558, 606, 706
HpyCH4V TGCA 9 cut(s) 252, 443, 468, 517, 666, 671, 778, 1001, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 1065
HpyF3I CTNAG 3 cut(s) 482, 674, 1076
HpySE526I ACGT 7 cut(s) 96, 201, 474, 519, 558, 606, 706
Hsp92II CATG 5 cut(s) 196, 731, 843, 1108, 1145
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 5 cut(s) 357, 683, 699, 925, 1112
LmnI GCTCC 4 cut(s) 110, 298, 392, 577
LweI GCATC 2 cut(s) 124, 373
MaeI CTAG 6 cut(s) 114, 233, 387, 687, 846, 852
MaeII ACGT 7 cut(s) 96, 201, 474, 519, 558, 606, 706
MaeIII GTNAC 6 cut(s) 520, 625, 784, 790, 991, 1080
MalI GATC 5 cut(s) 359, 685, 701, 927, 1114
MboI GATC 5 cut(s) 357, 683, 699, 925, 1112
MboII GAAGA 6 cut(s) 49, 528, 606, 609, 991, 1122
MfeI CAATTG 1 cut(s) 712
MflI RGATCY 2 cut(s) 357, 683
MhlI GDGCHC 4 cut(s) 187, 574, 800, 971
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 319, 564, 712, 886, 1174
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 633, 754
MmeI TCCRAC 1 cut(s) 1023
MnlI CCTC 7 cut(s) 110, 383, 444, 760, 851, 969, 1162
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 62, 93, 501, 1092
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 462
MspI CCGG 5 cut(s) 324, 355, 654, 722, 914
MspR9I CCNGG 1 cut(s) 723
MunI CAATTG 1 cut(s) 712
MwoI GCNNNNNNNGC 2 cut(s) 392, 1065
NciI CCSGG 1 cut(s) 723
NcoI CCATGG 2 cut(s) 192, 1141
NdeII GATC 5 cut(s) 357, 683, 699, 925, 1112
NlaIII CATG 5 cut(s) 196, 731, 843, 1108, 1145
NlaIV GGNNCC 6 cut(s) 246, 294, 376, 573, 643, 1167
NmuCI GTSAC 3 cut(s) 520, 625, 991
NspV TTCGAA 1 cut(s) 883
PaeR7I CTCGAG 1 cut(s) 186
PceI AGGCCT 1 cut(s) 850
PfeI GAWTC 2 cut(s) 334, 732
PflFI GACNNNGTC 1 cut(s) 142
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 2 cut(s) 632, 753
PpsI GAGTC 2 cut(s) 632, 753
Ppu21I YACGTR 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 245
PsiI TTATAA 1 cut(s) 263
Psp124BI GAGCTC 2 cut(s) 800, 971
Psp1406I AACGTT 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 245
PspN4I GGNNCC 6 cut(s) 246, 294, 376, 573, 643, 1167
PspPI GGNCC 2 cut(s) 245, 719
PspPPI RGGWCCY 1 cut(s) 245
PspXI VCTCGAGB 1 cut(s) 186
PsuI RGATCY 2 cut(s) 357, 683
PsyI GACNNNGTC 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 462
RsaI GTAC 2 cut(s) 107, 609
RsaNI GTAC 2 cut(s) 106, 608
SacI GAGCTC 2 cut(s) 800, 971
SaqAI TTAA 4 cut(s) 62, 93, 501, 1092
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 5 cut(s) 357, 683, 699, 925, 1112
Sau96I GGNCC 2 cut(s) 245, 719
SchI GAGTC 2 cut(s) 633, 754
ScrFI CCNGG 1 cut(s) 723
SduI GDGCHC 4 cut(s) 187, 574, 800, 971
SfaNI GCATC 2 cut(s) 124, 373
Sfr274I CTCGAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 883
SinI GGWCC 2 cut(s) 245, 719
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 186, 435
SmoI CTYRAG 2 cut(s) 186, 435
Sse9I AATT 5 cut(s) 319, 564, 712, 886, 1174
SseBI AGGCCT 1 cut(s) 850
SsiI CCGC 2 cut(s) 174, 639
SspI AATATT 1 cut(s) 52
SspMI CTAG 6 cut(s) 114, 233, 387, 687, 846, 852
SstI GAGCTC 2 cut(s) 800, 971
StuI AGGCCT 1 cut(s) 850
StyD4I CCNGG 1 cut(s) 721
StyI CCWWGG 3 cut(s) 192, 1141, 1169
TaaI ACNGT 4 cut(s) 371, 526, 612, 790
TaiI ACGT 7 cut(s) 99, 204, 477, 522, 561, 609, 709
TaqI TCGA 4 cut(s) 187, 702, 883, 924
TasI AATT 5 cut(s) 319, 564, 712, 886, 1174
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 2 cut(s) 334, 732
Tru1I TTAA 4 cut(s) 62, 93, 501, 1092
Tru9I TTAA 4 cut(s) 62, 93, 501, 1092
TseFI GTSAC 3 cut(s) 520, 625, 991
Tsp45I GTSAC 3 cut(s) 520, 625, 991
TspDTI ATGAA 3 cut(s) 518, 911, 1052
TspGWI ACGGA 2 cut(s) 123, 837
Tth111I GACNNNGTC 1 cut(s) 142
VpaK11BI GGWCC 2 cut(s) 245, 719
XagI CCTNNNNNAGG 1 cut(s) 855
XapI RAATTY 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 6 cut(s) 114, 233, 387, 687, 846, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.