Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014373

Physical Location & Seq

Genomic Coordinates Reverse (-)

18742477 .. 18744322

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCGGCGTCACAGACATTCTCACTCCTCGCCTTCACTTTCTCCCTCCTCGCCTTTGCTTCCACCGTGAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCAGATTACTCTTCCTTCAACAGCTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGATTACAGTTCTCGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCTCCGTTATTAAAAGCGCTTTAAGCCTCCTCGTCCTCCTCGATTACTACGATCCACAAAAACTCCACAAGATCTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAACGCTCCCGGAAACCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGCTTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATCCCTTACAACATCTCAATCCTCGAGATTGATGCTCCGATCATCGCTCCCGGAGTTTTAACCGCTCCTGCTCCTTCCGCCTCCTTGTCAAACATCACCGGATTACTCGAAAAAGCCGGTTGCAAAACCTTTGCTAATTTGCTTGTCTCAAGTGGAGTACTCAAGACTTACGAATCCGCCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTGAAGGTGTACCAGATCTGACGAAGCTCACACAAGCTGAGGTAGTCTCGCTCTTAGAGTATCACGCCCTCGCTGAGTATAAACCTAAAGGCTCATTGAAGACTAACAAGAACAATATCTCCACGTTAGCCACTAACGGCGCCGGAAAATTCGATCTAACGACCTCTACCTCCGGCGACGAAGTTATTCTCCACACCGGCGTTGCTCCGTCGAGACTCGCGGACACTGTGCTCGACGCGACTCCGGTTGTGATATTCACTGTGGATAATGTCCTTCTCCCTGCTGAGCTATTCGGAAAATCTAAATCTCCATCTCCGGCACCGGCGCCTGAGCCAGTTACCGCACCGACACCATCTCCAGCGGATGCACCTTCACCCACCGCAGCTTCACCACCGGCACCTCCGACGGACGAGTCACCGGAAAGTGCTCCTTCAGACTCGCCAACAGGTTCAGCGAACAGTAAGTCAGCTAACGCAGCGGTTGGCGTGAGCACACCGTCGTTGTTCACCGCATTGGTCACGATCGCCGCCATAGCCGTCTCCGTGTCTCTCTGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

420

Amino Acids

43.07

Weight (kDa)

5.43

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	198 - 328	3.2e-19	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45470 AT3G60900
fragaria_vesca	FvH4_7g12120
malus_domestica	MD02G1201100.v1.1
prunus_persica	Prupe.2G147700_v2.0.a1
pyrus_communis	pycom02g16450
rosa_chinensis	RchiOBHm_Chr1g0350871
rosa_laevigata	RLG00000028447
rosa_multiflora	Rmu_co8189458.1_g000001 Rmu_co8311065.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304450
rosa_rugosa	Rorug01G0214800
rosa_samantha	Rh1AG229200 Rh1BG199200 Rh1CG214000 Rh1DG227100
rosa_wichuraiana	Rw1G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1114
AccB1I	GGYRCC	4 cut(s)	842, 1021, 1027, 1099
AccBSI	CCGCTC	1 cut(s)	539
AccII	CGCG	2 cut(s)	923, 941
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	851
AcuI	CTGAAG	3 cut(s)	414, 726, 1119
AcyI	GRCGYC	3 cut(s)	8, 843, 1028
AfaI	GTAC	2 cut(s)	633, 714
AfeI	AGCGCT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	124, 659, 802
AloI	GAACNNNNNNTCC	2 cut(s)	806, 838
AluBI	AGCT	9 cut(s)	129, 148, 695, 704, 730, 740, 991, 1088, 1172
AluI	AGCT	9 cut(s)	129, 148, 695, 704, 730, 740, 991, 1088, 1172
Alw21I	GWGCWC	3 cut(s)	936, 1132, 1196
Alw26I	GTCTC	5 cut(s)	625, 754, 910, 1246, 1254
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	497
Aor51HI	AGCGCT	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	1085, 1178
ApoI	RAATTY	1 cut(s)	851
ArsI	GACNNNNNNTTYG	2 cut(s)	1151, 1183
Asp700I	GAANNNNTTC	1 cut(s)	888
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	4 cut(s)	206, 254, 845, 1030
AsuC2I	CCSGG	2 cut(s)	363, 525
AsuHPI	GGTGA	6 cut(s)	379, 562, 1068, 1083, 1110, 1201
AvaI	CYCGRG	1 cut(s)	497
AvrII	CCTAGG	1 cut(s)	370
BanI	GGYRCC	4 cut(s)	842, 1021, 1027, 1099
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	3 cut(s)	936, 1132, 1196
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	1097, 1190
BccI	CCATC	2 cut(s)	1021, 1063
BceAI	ACGGC	3 cut(s)	638, 856, 1223
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BcnI	CCSGG	2 cut(s)	363, 525
BcoDI	GTCTC	5 cut(s)	625, 754, 910, 1246, 1254
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	3 cut(s)	255, 846, 1031
BglII	AGATCT	2 cut(s)	306, 718
BisI	GCNGC	6 cut(s)	6, 169, 426, 1086, 1179, 1230
BlnI	CCTAGG	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	987
BlsI	GCNGC	6 cut(s)	7, 170, 427, 1087, 1180, 1231
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	2 cut(s)	363, 525
BmeT110I	CYCGRG	1 cut(s)	497
BmiI	GGNNCC	6 cut(s)	421, 436, 844, 1023, 1029, 1101
BmrFI	CCNGG	2 cut(s)	363, 525
BmsI	GCATC	2 cut(s)	496, 1057
BpiI	GAAGAC	1 cut(s)	809
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
BpmI	CTGGAG	2 cut(s)	90, 1044
Bpu10I	CCTNAGC	2 cut(s)	741, 1032
Bpu1102I	GCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	2 cut(s)	607, 620
BpuMI	CCSGG	2 cut(s)	363, 525
BsaHI	GRCGYC	3 cut(s)	8, 843, 1028
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	4 cut(s)	350, 572, 946, 1120
Bse118I	RCCGGY	4 cut(s)	590, 899, 1024, 1096
Bse1I	ACTGG	1 cut(s)	1037
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	229, 1072
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	5 cut(s)	152, 732, 768, 978, 1023
BseNI	ACTGG	1 cut(s)	1037
BseRI	GAGGAG	4 cut(s)	17, 38, 254, 263
BseXI	GCAGC	2 cut(s)	1097, 1190
Bsh1236I	CGCG	2 cut(s)	923, 941
Bsh1285I	CGRYCG	1 cut(s)	1227
BshNI	GGYRCC	4 cut(s)	842, 1021, 1027, 1099
BsiEI	CGRYCG	1 cut(s)	1227
BsiHKAI	GWGCWC	3 cut(s)	936, 1132, 1196
BsiHKCI	CYCGRG	1 cut(s)	497
BsmAI	GTCTC	5 cut(s)	625, 754, 910, 1246, 1254
BsmBI	CGTCTC	1 cut(s)	1246
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	936, 1132, 1196
Bsp143I	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
Bsp1720I	GCTNAGC	1 cut(s)	987
BspCNI	CTCAG	5 cut(s)	151, 733, 769, 979, 1024
BspFNI	CGCG	2 cut(s)	923, 941
BspLI	GGNNCC	6 cut(s)	421, 436, 844, 1023, 1029, 1101
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	4 cut(s)	842, 1021, 1027, 1099
BsrBI	CCGCTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	213
BsrFI	RCCGGY	4 cut(s)	590, 899, 1024, 1096
BsrI	ACTGG	1 cut(s)	1037
BssAI	RCCGGY	4 cut(s)	590, 899, 1024, 1096
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
BssNI	GRCGYC	3 cut(s)	8, 843, 1028
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	8 cut(s)	67, 184, 673, 684, 931, 964, 1163, 1200
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	3 cut(s)	8, 843, 1028
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	6 cut(s)	138, 741, 757, 777, 987, 1032
BstF5I	GGATG	2 cut(s)	229, 1072
BstFNI	CGCG	2 cut(s)	923, 941
BstH2I	RGCGCY	3 cut(s)	255, 846, 1031
BstHHI	GCGC	4 cut(s)	206, 254, 845, 1030
BstKTI	GATC	8 cut(s)	162, 289, 309, 394, 516, 721, 859, 1227
BstMAI	GTCTC	5 cut(s)	625, 754, 910, 1246, 1254
BstMBI	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
BstMCI	CGRYCG	1 cut(s)	1227
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 258, 551, 701, 1178, 1235
BstSCI	CCNGG	2 cut(s)	361, 523
BstUI	CGCG	2 cut(s)	923, 941
BstV1I	GCAGC	2 cut(s)	1097, 1190
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	2 cut(s)	306, 718
BstYI	RGATCY	2 cut(s)	306, 718
BtgZI	GCGATG	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	229, 1072
BtsIMutI	CAGTG	2 cut(s)	927, 960
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	4 cut(s)	206, 254, 845, 1030
Cfr10I	RCCGGY	4 cut(s)	590, 899, 1024, 1096
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	2 cut(s)	632, 713
CviQI	GTAC	2 cut(s)	632, 713
DdeI	CTNAG	6 cut(s)	138, 741, 757, 777, 987, 1032
DinI	GGCGCC	2 cut(s)	844, 1029
DpnI	GATC	8 cut(s)	161, 288, 308, 393, 515, 720, 858, 1226
DpnII	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
DraI	TTTAAA	1 cut(s)	700
DrdI	GACNNNNNNGTC	1 cut(s)	1114
DseDI	GACNNNNNNGTC	1 cut(s)	1114
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	3 cut(s)	412, 541, 640
Eco130I	CCWWGG	1 cut(s)	370
Eco47III	AGCGCT	1 cut(s)	253
Eco57I	CTGAAG	3 cut(s)	414, 726, 1119
Eco88I	CYCGRG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	370
EgeI	GGCGCC	2 cut(s)	844, 1029
EheI	GGCGCC	2 cut(s)	844, 1029
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	1246
FaiI	YATR	2 cut(s)	783, 1235
FalI	AAGNNNNNCTT	2 cut(s)	1117, 1149
Fnu4HI	GCNGC	6 cut(s)	6, 169, 426, 1086, 1179, 1230
FokI	GGATG	2 cut(s)	216, 1079
Fsp4HI	GCNGC	6 cut(s)	6, 169, 426, 1086, 1179, 1230
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	4 cut(s)	205, 253, 844, 1029
GluI	GCNGC	6 cut(s)	6, 169, 426, 1086, 1179, 1230
GsuI	CTGGAG	2 cut(s)	90, 1044
HaeII	RGCGCY	3 cut(s)	255, 846, 1031
HgaI	GACGC	1 cut(s)	947
HhaI	GCGC	4 cut(s)	206, 254, 845, 1030
Hin1I	GRCGYC	3 cut(s)	8, 843, 1028
Hin6I	GCGC	4 cut(s)	204, 252, 843, 1028
HinP1I	GCGC	4 cut(s)	204, 252, 843, 1028
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	8 cut(s)	101, 375, 446, 647, 918, 943, 1115, 1139
HphI	GGTGA	6 cut(s)	379, 562, 1068, 1083, 1110, 1201
Hpy166II	GTNNAC	3 cut(s)	382, 713, 1209
Hpy188I	TCNGA	8 cut(s)	141, 413, 513, 688, 723, 998, 1107, 1138
Hpy188III	TCNNGA	5 cut(s)	107, 499, 637, 915, 1222
Hpy8I	GTNNAC	3 cut(s)	382, 713, 1209
Hpy99I	CGWCG	7 cut(s)	158, 178, 884, 916, 941, 1111, 1204
HpyAV	CCTTC	7 cut(s)	43, 130, 558, 701, 986, 1083, 1143
HpyCH4III	ACNGT	8 cut(s)	67, 184, 673, 684, 931, 964, 1163, 1200
HpyCH4IV	ACGT	1 cut(s)	827
HpyCH4V	TGCA	3 cut(s)	597, 680, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 258, 551, 701, 1178, 1235
HpyF3I	CTNAG	6 cut(s)	138, 741, 757, 777, 987, 1032
HpySE526I	ACGT	1 cut(s)	827
Hsp92I	GRCGYC	3 cut(s)	8, 843, 1028
HspAI	GCGC	4 cut(s)	204, 252, 843, 1028
KasI	GGCGCC	2 cut(s)	842, 1027
Kzo9I	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
LmnI	GCTCC	8 cut(s)	364, 425, 514, 526, 544, 550, 913, 1135
Lsp1109I	GCAGC	2 cut(s)	1097, 1190
LweI	GCATC	2 cut(s)	496, 1057
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	827
MaeIII	GTNAC	4 cut(s)	9, 1039, 1116, 1219
MalI	GATC	8 cut(s)	161, 288, 308, 393, 515, 720, 858, 1226
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
MboII	GAAGA	2 cut(s)	108, 814
MflI	RGATCY	2 cut(s)	306, 718
MhlI	GDGCHC	3 cut(s)	936, 1132, 1196
MluCI	AATT	2 cut(s)	610, 851
Mly113I	GGCGCC	2 cut(s)	843, 1028
MlyI	GAGTC	4 cut(s)	912, 937, 1124, 1133
MmeI	TCCRAC	2 cut(s)	391, 1130
MroXI	GAANNNNTTC	1 cut(s)	888
MseI	TTAA	8 cut(s)	195, 246, 257, 396, 468, 533, 699, 1261
MspA1I	CMGCKG	2 cut(s)	1064, 1181
MspR9I	CCNGG	2 cut(s)	363, 525
MvnI	CGCG	2 cut(s)	923, 941
MwoI	GCNNNNNNNGC	6 cut(s)	212, 258, 551, 701, 1178, 1235
NarI	GGCGCC	2 cut(s)	843, 1028
NciI	CCSGG	2 cut(s)	363, 525
NdeII	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
NlaIV	GGNNCC	6 cut(s)	421, 436, 844, 1023, 1029, 1101
NmuCI	GTSAC	3 cut(s)	9, 1116, 1219
PaeR7I	CTCGAG	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	3 cut(s)	273, 282, 651
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	4 cut(s)	101, 375, 446, 647
PfoI	TCCNGGA	2 cut(s)	361, 523
PkrI	GCNGC	6 cut(s)	7, 170, 427, 1087, 1180, 1231
Ple19I	CGATCG	1 cut(s)	1227
PleI	GAGTC	4 cut(s)	912, 937, 1123, 1133
PluTI	GGCGCC	2 cut(s)	846, 1031
PpsI	GAGTC	4 cut(s)	912, 937, 1123, 1133
PspN4I	GGNNCC	6 cut(s)	421, 436, 844, 1023, 1029, 1101
PsuI	RGATCY	2 cut(s)	306, 718
PvuI	CGATCG	1 cut(s)	1227
RsaI	GTAC	2 cut(s)	633, 714
RsaNI	GTAC	2 cut(s)	632, 713
SaqAI	TTAA	8 cut(s)	195, 246, 257, 396, 468, 533, 699, 1261
SatI	GCNGC	6 cut(s)	6, 169, 426, 1086, 1179, 1230
Sau3AI	GATC	8 cut(s)	159, 286, 306, 391, 513, 718, 856, 1224
ScaI	AGTACT	1 cut(s)	633
SchI	GAGTC	4 cut(s)	912, 937, 1124, 1133
ScrFI	CCNGG	2 cut(s)	363, 525
SduI	GDGCHC	3 cut(s)	936, 1132, 1196
SfaNI	GCATC	2 cut(s)	496, 1057
SfoI	GGCGCC	2 cut(s)	844, 1029
Sfr274I	CTCGAG	1 cut(s)	497
SgrAI	CRCCGGYG	2 cut(s)	899, 1024
SlaI	CTCGAG	1 cut(s)	497
SmlI	CTYRAG	3 cut(s)	497, 622, 635
SmoI	CTYRAG	3 cut(s)	497, 622, 635
Sse9I	AATT	2 cut(s)	610, 851
SspDI	GGCGCC	2 cut(s)	842, 1027
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	361, 523
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	8 cut(s)	67, 184, 673, 684, 931, 964, 1163, 1200
TaiI	ACGT	1 cut(s)	830
TaqI	TCGA	7 cut(s)	276, 444, 498, 582, 855, 914, 936
TasI	AATT	2 cut(s)	610, 851
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	4 cut(s)	8, 171, 428, 1232
TfiI	GAWTC	4 cut(s)	101, 375, 446, 647
Tru1I	TTAA	8 cut(s)	195, 246, 257, 396, 468, 533, 699, 1261
Tru9I	TTAA	8 cut(s)	195, 246, 257, 396, 468, 533, 699, 1261
TscAI	CASTG	2 cut(s)	934, 967
TseFI	GTSAC	3 cut(s)	9, 1116, 1219
TseI	GCWGC	2 cut(s)	1085, 1178
Tsp45I	GTSAC	3 cut(s)	9, 1116, 1219
TspDTI	ATGAA	2 cut(s)	438, 705
TspGWI	ACGGA	5 cut(s)	229, 454, 900, 1124, 1234
TspRI	CASTG	2 cut(s)	934, 967
XapI	RAATTY	1 cut(s)	851
XhoI	CTCGAG	1 cut(s)	497
XmaJI	CCTAGG	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	1 cut(s)	371
ZrmI	AGTACT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.