Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8189458.1

Orthogroup ID

OG0014373

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 696

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8189458.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

gcgcttctagaaaaagccgggtgcaaaaccttcgcttctttaatcgtctccagcggggtgctcaagactttccagaccaccgccgataagggattgactctgtttgtgccgaacgacgaggcgtttaaggccaagggcgtgccggatctgaccaagctcaccaatgccgaggtcgtttcgctcttgcagtaccacgccgtccctaaatacactcccaaaggtgccctcaagaccaccaaggatccaatcagcactctcgccaccaatggcgccggaaagtacgacctgaccgtcaccacctccggtgaccaggtcacactccacaccggagtcgactcctccagagtcgccgacactgtcctcgactctactccgttttcagtcttcactgtcgacagtgttcttctcccaattgagctcttcggcaaatctccatcgccggcgccgtcgatggagccggtggctgctccttcaccgacaccagtcgttgctcccagcccagcttctgtagaagcgccgtcgccgtcggccgcttcaccgccggctcctccttccgagacaccggagggagctccgtcggatgcaccgtcggcagcggcggcggacagtacctcggcgaatggagctggtcacgtgacttcacctgcattgttgatgacagtgctcactgtcacctctgtgactgtcatttcctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

232

Amino Acids

23.36

Weight (kDa)

4.96

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45470 AT3G60900
fragaria_vesca	FvH4_7g12120
malus_domestica	MD02G1201100.v1.1
prunus_persica	Prupe.2G147700_v2.0.a1
pyrus_communis	pycom02g16450
rosa_chinensis	RchiOBHm_Chr1g0350871
rosa_laevigata	RLG00000028447
rosa_multiflora	Rmu_co8189458.1_g000001 Rmu_co8311065.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304450
rosa_rugosa	Rorug01G0214800
rosa_samantha	Rh1AG229200 Rh1BG199200 Rh1CG214000 Rh1DG227100
rosa_wichuraiana	Rw1G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	3 cut(s)	221, 269, 442
AccI	GTMKAC	2 cut(s)	333, 393
AciI	CCGC	7 cut(s)	54, 81, 531, 539, 596, 599, 602
AclWI	GGATC	3 cut(s)	153, 236, 249
AcoI	YGGCCR	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	634
AcyI	GRCGYC	2 cut(s)	270, 443
AfaI	GTAC	3 cut(s)	191, 281, 610
AjnI	CCWGG	1 cut(s)	309
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	5 cut(s)	157, 418, 503, 572, 626
AluI	AGCT	5 cut(s)	157, 418, 503, 572, 626
Alw21I	GWGCWC	4 cut(s)	63, 420, 574, 666
Alw26I	GTCTC	2 cut(s)	52, 551
AlwI	GGATC	3 cut(s)	153, 236, 249
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	129, 528
ApeKI	GCWGC	2 cut(s)	464, 593
AspLEI	GCGC	4 cut(s)	4, 272, 445, 517
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	7 cut(s)	151, 286, 317, 465, 528, 633, 664
BaeGI	GKGCMC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	3 cut(s)	221, 269, 442
BanII	GRGCYC	2 cut(s)	420, 574
BbrPI	CACGTG	1 cut(s)	634
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	4 cut(s)	63, 420, 574, 666
BbvI	GCAGC	2 cut(s)	451, 605
BccI	CCATC	2 cut(s)	442, 445
BceAI	ACGGC	4 cut(s)	182, 430, 502, 508
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	52, 551
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	3 cut(s)	273, 446, 518
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	5 cut(s)	465, 531, 594, 597, 600
BlsI	GCNGC	5 cut(s)	466, 532, 595, 598, 601
Bme1390I	CCNGG	2 cut(s)	19, 311
BmiI	GGNNCC	6 cut(s)	223, 243, 271, 444, 456, 546
BmrFI	CCNGG	2 cut(s)	19, 311
BmsI	GCATC	1 cut(s)	571
BoxI	GACNNNNGTC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	2 cut(s)	34, 325
BpuEI	CTTGAG	2 cut(s)	47, 212
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	634
BsaHI	GRCGYC	2 cut(s)	270, 443
BsaJI	CCNNGG	4 cut(s)	132, 168, 237, 612
BsaWI	WCCGGW	3 cut(s)	302, 326, 562
Bse118I	RCCGGY	3 cut(s)	439, 457, 541
Bse1I	ACTGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	132, 168, 237, 612
BseGI	GGATG	1 cut(s)	586
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	2 cut(s)	328, 537
BseSI	GKGCMC	1 cut(s)	226
BseX3I	CGGCCG	1 cut(s)	528
BseXI	GCAGC	2 cut(s)	451, 605
BseYI	CCCAGC	2 cut(s)	494, 499
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	131, 530
BshNI	GGYRCC	3 cut(s)	221, 269, 442
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	4 cut(s)	63, 420, 574, 666
BsiSI	CCGG	9 cut(s)	18, 143, 273, 303, 327, 440, 458, 542, 563
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	52, 551
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	131, 530
Bsp1286I	GDGCHC	5 cut(s)	63, 226, 420, 574, 666
Bsp143I	GATC	2 cut(s)	145, 241
BspACI	CCGC	7 cut(s)	54, 81, 531, 539, 596, 599, 602
BspANI	GGCC	2 cut(s)	131, 530
BspLI	GGNNCC	6 cut(s)	223, 243, 271, 444, 456, 546
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	3 cut(s)	153, 236, 249
BspQI	GCTCTTC	1 cut(s)	425
BspT107I	GGYRCC	3 cut(s)	221, 269, 442
BsrFI	RCCGGY	3 cut(s)	439, 457, 541
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	3 cut(s)	439, 457, 541
BssECI	CCNNGG	4 cut(s)	132, 168, 237, 612
BssMI	GATC	2 cut(s)	145, 241
BssNI	GRCGYC	2 cut(s)	270, 443
BssT1I	CCWWGG	2 cut(s)	132, 237
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	9 cut(s)	292, 358, 391, 398, 588, 608, 661, 670, 685
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	2 cut(s)	270, 443
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	3 cut(s)	140, 441, 543
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	586
BstH2I	RGCGCY	3 cut(s)	273, 446, 518
BstHHI	GCGC	4 cut(s)	4, 272, 445, 517
BstKTI	GATC	2 cut(s)	148, 244
BstMAI	GTCTC	2 cut(s)	52, 551
BstMBI	GATC	2 cut(s)	145, 241
BstMCI	CGRYCG	1 cut(s)	531
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 590, 599, 623
BstNI	CCWGG	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	17, 309
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	451, 605
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	2 cut(s)	145, 241
BstYI	RGATCY	2 cut(s)	145, 241
BstZI	CGGCCG	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	131, 530
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	5 cut(s)	354, 387, 403, 666, 666
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	140, 441, 543
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	4 cut(s)	4, 272, 445, 517
Cfr10I	RCCGGY	3 cut(s)	439, 457, 541
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	190, 280, 609
CviQI	GTAC	3 cut(s)	190, 280, 609
DinI	GGCGCC	2 cut(s)	271, 444
DpnI	GATC	2 cut(s)	147, 243
DpnII	GATC	2 cut(s)	145, 241
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	528
EagI	CGGCCG	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
EciI	GGCGGA	1 cut(s)	617
Ecl136II	GAGCTC	2 cut(s)	418, 572
EclXI	CGGCCG	1 cut(s)	528
Eco130I	CCWWGG	2 cut(s)	132, 237
Eco24I	GRGCYC	2 cut(s)	420, 574
Eco52I	CGGCCG	1 cut(s)	528
Eco53kI	GAGCTC	2 cut(s)	418, 572
Eco72I	CACGTG	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	305
EcoICRI	GAGCTC	2 cut(s)	418, 572
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	132, 237
EcoT38I	GRGCYC	2 cut(s)	420, 574
EgeI	GGCGCC	2 cut(s)	271, 444
EheI	GGCGCC	2 cut(s)	271, 444
ErhI	CCWWGG	2 cut(s)	132, 237
Esp3I	CGTCTC	1 cut(s)	52
FaqI	GGGAC	1 cut(s)	185
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	2 cut(s)	333, 393
Fnu4HI	GCNGC	5 cut(s)	465, 531, 594, 597, 600
FokI	GGATG	1 cut(s)	593
FriOI	GRGCYC	2 cut(s)	420, 574
Fsp4HI	GCNGC	5 cut(s)	465, 531, 594, 597, 600
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	4 cut(s)	3, 271, 444, 516
GluI	GCNGC	5 cut(s)	465, 531, 594, 597, 600
GsaI	CCCAGC	2 cut(s)	498, 503
GsuI	CTGGAG	2 cut(s)	34, 325
HaeII	RGCGCY	3 cut(s)	273, 446, 518
HaeIII	GGCC	2 cut(s)	131, 530
HapII	CCGG	9 cut(s)	18, 143, 273, 303, 327, 440, 458, 542, 563
HhaI	GCGC	4 cut(s)	4, 272, 445, 517
Hin1I	GRCGYC	2 cut(s)	270, 443
Hin6I	GCGC	4 cut(s)	2, 270, 443, 515
HinP1I	GCGC	4 cut(s)	2, 270, 443, 515
HincII	GTYRAC	2 cut(s)	334, 394
HindII	GTYRAC	2 cut(s)	334, 394
HinfI	GANTC	5 cut(s)	97, 330, 335, 345, 365
HpaII	CCGG	9 cut(s)	18, 143, 273, 303, 327, 440, 458, 542, 563
HphI	GGTGA	7 cut(s)	151, 286, 317, 465, 528, 633, 664
Hpy166II	GTNNAC	2 cut(s)	334, 394
Hpy188I	TCNGA	3 cut(s)	150, 556, 580
Hpy188III	TCNNGA	5 cut(s)	8, 64, 73, 229, 342
Hpy8I	GTNNAC	2 cut(s)	334, 394
Hpy99I	CGWCG	6 cut(s)	119, 451, 523, 529, 580, 592
HpyAV	CCTTC	3 cut(s)	40, 480, 561
HpyCH4III	ACNGT	9 cut(s)	292, 358, 391, 398, 588, 608, 661, 670, 685
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	4 cut(s)	24, 187, 584, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 590, 599, 623
HpySE526I	ACGT	1 cut(s)	633
Hsp92I	GRCGYC	2 cut(s)	270, 443
HspAI	GCGC	4 cut(s)	2, 270, 443, 515
KasI	GGCGCC	2 cut(s)	269, 442
KroI	GCCGGC	2 cut(s)	439, 541
KroNI	GCCGGC	2 cut(s)	441, 543
Kzo9I	GATC	2 cut(s)	145, 241
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	7 cut(s)	454, 472, 496, 550, 569, 577, 623
Lsp1109I	GCAGC	2 cut(s)	451, 605
LweI	GCATC	1 cut(s)	571
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	7 cut(s)	292, 305, 313, 629, 634, 670, 679
MalI	GATC	2 cut(s)	147, 243
MboI	GATC	2 cut(s)	145, 241
MboII	GAAGA	3 cut(s)	376, 395, 412
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	2 cut(s)	145, 241
MhlI	GDGCHC	5 cut(s)	63, 226, 420, 574, 666
MluCI	AATT	1 cut(s)	411
Mly113I	GGCGCC	2 cut(s)	270, 443
MlyI	GAGTC	5 cut(s)	91, 329, 339, 354, 359
MmeI	TCCRAC	1 cut(s)	558
MreI	CGCCGGCG	1 cut(s)	439
MroNI	GCCGGC	2 cut(s)	439, 541
MseI	TTAA	2 cut(s)	41, 126
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	2 cut(s)	54, 596
MspI	CCGG	9 cut(s)	18, 143, 273, 303, 327, 440, 458, 542, 563
MspR9I	CCNGG	2 cut(s)	19, 311
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	128, 590, 599, 623
NaeI	GCCGGC	2 cut(s)	441, 543
NarI	GGCGCC	2 cut(s)	270, 443
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	145, 241
NgoMIV	GCCGGC	2 cut(s)	439, 541
NlaIV	GGNNCC	6 cut(s)	223, 243, 271, 444, 456, 546
NmeAIII	GCCGAG	2 cut(s)	193, 593
NmuCI	GTSAC	7 cut(s)	292, 305, 313, 629, 634, 670, 679
OliI	CACNNNNGTG	1 cut(s)	677
PaqCI	CACCTGC	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 443, 584
PdiI	GCCGGC	2 cut(s)	441, 543
PflFI	GACNNNGTC	2 cut(s)	311, 356
PkrI	GCNGC	5 cut(s)	466, 532, 595, 598, 601
PleI	GAGTC	5 cut(s)	91, 329, 338, 353, 359
PluTI	GGCGCC	2 cut(s)	273, 446
PmaCI	CACGTG	1 cut(s)	634
PmlI	CACGTG	1 cut(s)	634
PpsI	GAGTC	5 cut(s)	91, 329, 338, 353, 359
Ppu21I	YACGTR	1 cut(s)	634
PshAI	GACNNNNGTC	1 cut(s)	482
Psp124BI	GAGCTC	2 cut(s)	420, 574
Psp6I	CCWGG	1 cut(s)	309
PspCI	CACGTG	1 cut(s)	634
PspEI	GGTNACC	1 cut(s)	305
PspFI	CCCAGC	2 cut(s)	494, 499
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	6 cut(s)	223, 243, 271, 444, 456, 546
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	145, 241
PsyI	GACNNNGTC	2 cut(s)	311, 356
RsaI	GTAC	3 cut(s)	191, 281, 610
RsaNI	GTAC	3 cut(s)	190, 280, 609
RseI	CAYNNNNRTG	1 cut(s)	677
SacI	GAGCTC	2 cut(s)	420, 574
SalI	GTCGAC	2 cut(s)	332, 392
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	41, 126
SatI	GCNGC	5 cut(s)	465, 531, 594, 597, 600
Sau3AI	GATC	2 cut(s)	145, 241
SchI	GAGTC	5 cut(s)	91, 329, 339, 354, 359
ScrFI	CCNGG	2 cut(s)	19, 311
SduI	GDGCHC	5 cut(s)	63, 226, 420, 574, 666
SexAI	ACCWGGT	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	507
SfoI	GGCGCC	2 cut(s)	271, 444
SgrAI	CRCCGGYG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	2 cut(s)	62, 227
SmoI	CTYRAG	2 cut(s)	62, 227
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	7 cut(s)	54, 81, 531, 539, 596, 599, 602
SspDI	GGCGCC	2 cut(s)	269, 442
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	2 cut(s)	420, 574
StyD4I	CCNGG	2 cut(s)	17, 309
StyI	CCWWGG	2 cut(s)	132, 237
TaaI	ACNGT	9 cut(s)	292, 358, 391, 398, 588, 608, 661, 670, 685
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	4 cut(s)	333, 363, 393, 449
TasI	AATT	1 cut(s)	411
TauI	GCSGC	3 cut(s)	533, 599, 602
Tru1I	TTAA	2 cut(s)	41, 126
Tru9I	TTAA	2 cut(s)	41, 126
TscAI	CASTG	5 cut(s)	361, 394, 403, 666, 673
TseFI	GTSAC	7 cut(s)	292, 305, 313, 629, 634, 670, 679
TseI	GCWGC	2 cut(s)	464, 593
Tsp45I	GTSAC	7 cut(s)	292, 305, 313, 629, 634, 670, 679
TspGWI	ACGGA	2 cut(s)	363, 564
TspRI	CASTG	5 cut(s)	361, 394, 403, 666, 673
Tth111I	GACNNNGTC	2 cut(s)	311, 356
XbaI	TCTAGA	1 cut(s)	7
XmiI	GTMKAC	2 cut(s)	333, 393
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.