Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023593

Physical Location & Seq

Genomic Coordinates Reverse (-)

19089486 .. 19090776

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46505.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCTCTCCGCCGCACTATCCTCGATCTCCACCGTCAAACCCAGAGAGCCACTCTCTCAAAGTCTCTACCTTTCTCGATGAGTCACATCTCCTCCGCATCCGCCACCGCCGCCGTGAGAAACCCACTGGGAAGAGACCTCTCTTCAATCCCCTTCGCACAAGCCCAGAAACTGAAACCAGATTCAACCAATCTCGTCACCGATCGCTCGATTTCGTCTTCAATTGGGCAATCTGAACTCAACAAGGCAGCCAAATTCTCGCGTCAATCGTCTTCTCGAGGTTACACTAATGGCTCTTTCTTACGCAAAATCCCTGTAGTCTTTCACATACATGAAGGAATGGAAGAGATTTTGGCGGATTATGTTCACCAAGAAATGACAAGGAATTTGATTGTGATGTCTTTGGGATTGTTCCAGATTATCGTTCTTAAAGATATTATCTTGTTTCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008177 GO:0009060 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016627 GO:0016635 GO:0016999 GO:0017144 GO:0019752 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0055114 GO:0070469 GO:0071704 GO:0072350 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

10.26

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0023593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46505
fragaria_vesca	FvH4_2g13880
rosa_chinensis	RchiOBHm_Chr6g0257981

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	262
AciI	CCGC	7 cut(s)	10, 13, 96, 102, 108, 111, 356
AcsI	RAATTY	2 cut(s)	254, 385
AgsI	TTSAA	3 cut(s)	147, 186, 222
Alw26I	GTCTC	3 cut(s)	9, 69, 129
AlwNI	CAGNNNCTG	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	254, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AsuHPI	GGTGA	2 cut(s)	190, 359
AvaI	CYCGRG	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	210, 264
BbvI	GCAGC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcoDI	GTCTC	3 cut(s)	9, 69, 129
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	3 cut(s)	13, 111, 249
BlsI	GCNGC	3 cut(s)	14, 112, 250
BmeT110I	CYCGRG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	107
BmuI	ACTGGG	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	210, 264
BplI	GAGNNNNNCTC	4 cut(s)	37, 69, 39, 71
BsaI	GGTCTC	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bse1I	ACTGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	276
BsmAI	GTCTC	3 cut(s)	9, 69, 129
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	25, 202
BspACI	CCGC	7 cut(s)	10, 13, 96, 102, 108, 111, 356
BspFNI	CGCG	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	25, 202
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	3 cut(s)	127, 148, 339
BstF5I	GGATG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	28, 205
BstMAI	GTCTC	3 cut(s)	9, 69, 129
BstMBI	GATC	2 cut(s)	25, 202
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	2 cut(s)	210, 264
BtsCI	GGATG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	172
CseI	GACGC	1 cut(s)	251
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	4 cut(s)	50, 164, 251, 294
CviKI_1	RGCY	4 cut(s)	50, 164, 251, 294
DpnI	GATC	2 cut(s)	27, 204
DpnII	GATC	2 cut(s)	25, 202
Eam1104I	CTCTTC	3 cut(s)	127, 148, 339
EarI	CTCTTC	3 cut(s)	127, 148, 339
EciI	GGCGGA	2 cut(s)	91, 371
Eco31I	GGTCTC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	276
FaeI	CATG	1 cut(s)	335
FaiI	YATR	3 cut(s)	329, 333, 363
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	13, 111, 249
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	13, 111, 249
GluI	GCNGC	3 cut(s)	13, 111, 249
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	2 cut(s)	82, 182
HphI	GGTGA	2 cut(s)	190, 359
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	235, 455
Hpy188III	TCNNGA	3 cut(s)	76, 276, 415
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	163, 329
HpyCH4III	ACNGT	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	25, 202
LpnPI	CCDG	6 cut(s)	56, 113, 179, 192, 327, 428
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	3 cut(s)	83, 196, 281
MalI	GATC	2 cut(s)	27, 204
MboI	GATC	2 cut(s)	25, 202
MboII	GAAGA	6 cut(s)	135, 144, 210, 264, 356, 440
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	3 cut(s)	222, 254, 385
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	32, 103, 149, 272
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	25, 202
NlaIII	CATG	1 cut(s)	335
NmuCI	GTSAC	2 cut(s)	83, 196
PaeR7I	CTCGAG	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	14, 112, 250
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	13, 111, 249
Sau3AI	GATC	2 cut(s)	25, 202
SchI	GAGTC	1 cut(s)	91
SetI	ASST	3 cut(s)	73, 141, 283
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	3 cut(s)	222, 254, 385
SsiI	CCGC	7 cut(s)	10, 13, 96, 102, 108, 111, 356
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	4 cut(s)	24, 77, 209, 277
TasI	AATT	3 cut(s)	222, 254, 385
TauI	GCSGC	2 cut(s)	15, 113
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	83, 196
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	83, 196
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	2 cut(s)	254, 385
XhoI	CTCGAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.