RchiOBHm_Chr6g0257981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0023593
Physical Location & Seq
Forward (+)
13452887 .. 13453294
408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23133

Sequence Viewer

Length: 393 bp
ATGACTGCGTCTTTAATACTCCTTTATATTTGCTTATACAAAAAAGTCTTTCCCACTGCCCTACCAAATTTATCTGTATTCTGCCACATAACTTCAGGGATCGAAGGGATTATGGCAGATCATGTTCACCAAAAAATGACCTACGAATTTATCTTTTGCTCTTTCAGATTGTTCCTTTTAATCGTAATCAAAGATCTTTTCTTGTCTCTCGTTTCTTTTCCGAACAAATCGAAGAACCTAATGGATCGAACTCATCCTTGGCTGCTACGAAACATATCGGCCTTGCGTTGCGGAAGGAACGTTATCTTCTTGGGGTTAGTACTTCACTCCGGGTTCCTTGCGGCGCTGCCTCATGCTTGCGCTTGCTTGAATGCCAGTACGTTACTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

9.04

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023593)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46505
fragaria_vesca FvH4_2g13880
rosa_chinensis RchiOBHm_Chr6g0257981

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 291, 341
AclI AACGTT 1 cut(s) 300
AclWI GGATC 2 cut(s) 107, 252
AcsI RAATTY 2 cut(s) 67, 146
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 321, 379
AgsI TTSAA 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 241, 273
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 2 cut(s) 107, 252
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 262, 346
ApoI RAATTY 2 cut(s) 67, 146
AspLEI GCGC 2 cut(s) 346, 362
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 119
BbvI GCAGC 2 cut(s) 249, 333
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 347
BglII AGATCT 1 cut(s) 193
BisI GCNGC 3 cut(s) 263, 342, 347
BlsI GCNGC 3 cut(s) 264, 343, 348
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 249, 333
BshFI GGCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 4 cut(s) 99, 118, 193, 244
BspACI CCGC 2 cut(s) 291, 341
BspANI GGCC 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 335
BspPI GGATC 2 cut(s) 107, 252
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 4 cut(s) 99, 118, 193, 244
BssT1I CCWWGG 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 358, 364
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 2 cut(s) 346, 362
BstKTI GATC 4 cut(s) 102, 121, 196, 247
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 4 cut(s) 99, 118, 193, 244
BstSCI CCNGG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 249, 333
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 358, 364
CfoI GCGC 2 cut(s) 346, 362
Csp6I GTAC 2 cut(s) 320, 378
CviAII CATG 2 cut(s) 122, 353
CviJI RGCY 2 cut(s) 262, 281
CviKI_1 RGCY 2 cut(s) 262, 281
CviQI GTAC 2 cut(s) 320, 378
DpnI GATC 4 cut(s) 101, 120, 195, 246
DpnII GATC 4 cut(s) 99, 118, 193, 244
Eco130I CCWWGG 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 2 cut(s) 125, 356
FaiI YATR 7 cut(s) 27, 37, 89, 113, 123, 275, 354
FatI CATG 2 cut(s) 121, 352
Fnu4HI GCNGC 3 cut(s) 263, 342, 347
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 263, 342, 347
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 345, 361
GluI GCNGC 3 cut(s) 263, 342, 347
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 330
HhaI GCGC 2 cut(s) 346, 362
Hin1II CATG 2 cut(s) 125, 356
Hin6I GCGC 2 cut(s) 344, 360
HinP1I GCGC 2 cut(s) 344, 360
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 167, 222
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 98, 288
HpyCH4IV ACGT 2 cut(s) 300, 380
HpySE526I ACGT 2 cut(s) 300, 380
Hsp92II CATG 2 cut(s) 125, 356
HspAI GCGC 2 cut(s) 344, 360
Kzo9I GATC 4 cut(s) 99, 118, 193, 244
LpnPI CCDG 3 cut(s) 81, 343, 388
Lsp1109I GCAGC 2 cut(s) 249, 333
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 300, 380
MaeIII GTNAC 1 cut(s) 381
MalI GATC 4 cut(s) 101, 120, 195, 246
MboI GATC 4 cut(s) 99, 118, 193, 244
MboII GAAGA 2 cut(s) 244, 298
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 67, 146
MnlI CCTC 1 cut(s) 360
MseI TTAA 2 cut(s) 14, 179
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 376
NciI CCSGG 1 cut(s) 331
NdeII GATC 4 cut(s) 99, 118, 193, 244
NlaIII CATG 2 cut(s) 125, 356
NlaIV GGNNCC 1 cut(s) 335
PctI GAATGC 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 3 cut(s) 264, 343, 348
Psp1406I AACGTT 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 335
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 2 cut(s) 321, 379
RsaNI GTAC 2 cut(s) 320, 378
SaqAI TTAA 2 cut(s) 14, 179
SatI GCNGC 3 cut(s) 263, 342, 347
Sau3AI GATC 4 cut(s) 99, 118, 193, 244
ScaI AGTACT 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 331
SetI ASST 4 cut(s) 143, 240, 303, 383
Sse9I AATT 2 cut(s) 67, 146
SsiI CCGC 2 cut(s) 291, 341
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 257
TaiI ACGT 2 cut(s) 303, 383
TaqI TCGA 3 cut(s) 102, 230, 247
TasI AATT 2 cut(s) 67, 146
TatI WGTACW 1 cut(s) 319
TauI GCSGC 1 cut(s) 344
Tru1I TTAA 2 cut(s) 14, 179
Tru9I TTAA 2 cut(s) 14, 179
TscAI CASTG 1 cut(s) 61
TseI GCWGC 2 cut(s) 262, 346
TspRI CASTG 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 7
XapI RAATTY 2 cut(s) 67, 146
XspI CTAG 1 cut(s) 386
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.