AT2G46690

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0019141
Physical Location & Seq
Forward (+)
19180705 .. 19181600
896 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46690.1

Sequence Viewer

Length: 366 bp
ATGGGCACCGGAGAAAAAACCCTGAAGAGCTTCCAGTTACATCGCAAACAATCAGTCAAAGTCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTGGGATCGCAAGGAGAAGAGCAACAGAGATTTATCGTTCCTGTTTTGTATTTTAACCATCCATTGTTCATGCAGCTCCTGAAAGAAGCAGAAGACGAGTATGGATTCGATCAAAAGGGCACCATCACAATTCCTTGTCACGTGGAGGAGTTTCGTTACGTTCAAGCTTTGATAGATGGAGAGAGATCAGTTTACAATGGTAACAACCATCATCATAGACATGGTGGCCGTGACCAGTATCATCATCTTGTTGGATGCTTCAGAGCTTGA

Protein Analysis

121

Amino Acids

13.95

Weight (kDa)

8.46

Isoelectric Point (pI)

26.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 12 - 89 5.1e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46690
fragaria_vesca FvH4_7g17340
rosa_chinensis RchiOBHm_Chr1g0360781
rosa_laevigata RLG00000027787
rosa_multiflora Rmu_ssc0000022.1_g000031
rosa_roxburghii Rroxscaffold_4G00295830
rosa_rugosa Rorug01G0281300
rosa_wichuraiana Rw1G025960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 5, 215
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 322
AcuI CTGAAG 2 cut(s) 44, 340
AcvI CACGTG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 4 cut(s) 30, 172, 263, 362
AluI AGCT 4 cut(s) 30, 172, 263, 362
AlwI GGATC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
Asp700I GAANNNNTTC 1 cut(s) 29
BaeGI GKGCMC 2 cut(s) 8, 218
BanI GGYRCC 2 cut(s) 5, 215
BbrPI CACGTG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 181
BccI CCATC 4 cut(s) 162, 227, 266, 312
BceAI ACGGC 1 cut(s) 309
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 7, 217
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 34, 331
BseGI GGATG 2 cut(s) 154, 356
BseNI ACTGG 2 cut(s) 34, 331
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 2 cut(s) 8, 218
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 2 cut(s) 5, 215
BsiSI CCGG 1 cut(s) 9
BsnI GGCC 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 8, 218
Bsp143I GATC 4 cut(s) 90, 101, 205, 281
BspANI GGCC 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 7, 217
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 2 cut(s) 20, 108
BspT107I GGYRCC 2 cut(s) 5, 215
BsrI ACTGG 2 cut(s) 34, 331
BssMI GATC 4 cut(s) 90, 101, 205, 281
Bst6I CTCTTC 2 cut(s) 20, 108
BstBAI YACGTR 1 cut(s) 238
BstF5I GGATG 2 cut(s) 154, 356
BstKTI GATC 4 cut(s) 93, 104, 208, 284
BstMBI GATC 4 cut(s) 90, 101, 205, 281
BstSLI GKGCMC 2 cut(s) 8, 218
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 154, 356
CaiI CAGNNNCTG 1 cut(s) 175
CviAII CATG 2 cut(s) 166, 317
CviJI RGCY 5 cut(s) 30, 172, 263, 324, 362
CviKI_1 RGCY 5 cut(s) 30, 172, 263, 324, 362
DpnI GATC 4 cut(s) 92, 103, 207, 283
DpnII GATC 4 cut(s) 90, 101, 205, 281
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 20, 108
EarI CTCTTC 2 cut(s) 20, 108
Eco57I CTGAAG 2 cut(s) 44, 340
Eco72I CACGTG 1 cut(s) 238
FaeI CATG 2 cut(s) 169, 320
FaiI YATR 4 cut(s) 167, 198, 312, 318
FatI CATG 2 cut(s) 165, 316
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 324
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 169, 320
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 1 cut(s) 201
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 1 cut(s) 359
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 237, 255
HpyCH4V TGCA 1 cut(s) 169
HpySE526I ACGT 2 cut(s) 237, 255
Hsp92II CATG 2 cut(s) 169, 320
Kzo9I GATC 4 cut(s) 90, 101, 205, 281
LguI GCTCTTC 2 cut(s) 20, 108
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 6 cut(s) 22, 35, 47, 150, 188, 344
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 341
MaeII ACGT 2 cut(s) 237, 255
MaeIII GTNAC 5 cut(s) 36, 233, 251, 296, 326
MalI GATC 4 cut(s) 92, 103, 207, 283
MboI GATC 4 cut(s) 90, 101, 205, 281
MboII GAAGA 3 cut(s) 37, 125, 200
MhlI GDGCHC 2 cut(s) 8, 218
MluCI AATT 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 1 cut(s) 9
NdeII GATC 4 cut(s) 90, 101, 205, 281
NlaIII CATG 2 cut(s) 169, 320
NlaIV GGNNCC 2 cut(s) 7, 217
NmuCI GTSAC 2 cut(s) 233, 326
PciSI GCTCTTC 2 cut(s) 20, 108
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 171
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 238
PspCI CACGTG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 7, 217
PstNI CAGNNNCTG 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 315
SapI GCTCTTC 2 cut(s) 20, 108
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 4 cut(s) 90, 101, 205, 281
SduI GDGCHC 2 cut(s) 8, 218
SetI ASST 6 cut(s) 32, 174, 240, 258, 265, 364
SfaNI GCATC 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 315
Sse9I AATT 1 cut(s) 225
TaiI ACGT 2 cut(s) 240, 258
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 225
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseFI GTSAC 2 cut(s) 233, 326
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 2 cut(s) 233, 326
TspDTI ATGAA 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.