FvH4_7g17340

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0019141
Physical Location & Seq
Forward (+)
14759799 .. 14760392
594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17340.t1

Sequence Viewer

Length: 459 bp
ATGGGTACGAATTTCCATCTGCACCTCCCTCACCTTCATCATCATCATCACAGCAACCACAAGAACAAGCAGGTGAATGGCCGAGACGTTCCGAAGGGGTGTCTGGCCATCAAGGTGGGCGTGGGAGAAGAGCAGCAGAGGTTCGTGGTGCCTGTGCTTTACTTCAACCACCCGCTCTTCATTCAGCTCTTGAAGGAAGCAGAGAAGGAGTACGGGTTCGATCAGAAGGGCACCATCACCATCCCTTGCCATGTGGAGGAGTTCCGGTACGTTCAGGGCATGATTGACAGGGAGAGGTCCGTCCACGGCCACCACCATCACCACCACTTGGAAGATGATGGCAAAGGTGAGGTAGTGATGATGGATGATGATGATGAAAAGTTTGAATGTGGCTTGCCAATTGTAGTCATTTTGTATTTTCTTAGGAACCATAATGAAAAAGAGAGTTTACTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

153

Amino Acids

17.76

Weight (kDa)

6.23

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 94 1.3e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46690
fragaria_vesca FvH4_7g17340
rosa_chinensis RchiOBHm_Chr1g0360781
rosa_laevigata RLG00000027787
rosa_multiflora Rmu_ssc0000022.1_g000031
rosa_roxburghii Rroxscaffold_4G00295830
rosa_rugosa Rorug01G0281300
rosa_wichuraiana Rw1G025960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
Acc36I ACCTGC 1 cut(s) 61
AccB1I GGYRCC 2 cut(s) 148, 230
AccB7I CCANNNNNTGG 1 cut(s) 328
AccBSI CCGCTC 1 cut(s) 175
AciI CCGC 1 cut(s) 173
AcoI YGGCCR 3 cut(s) 79, 105, 307
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 3 cut(s) 7, 212, 269
AfiI CCNNNNNNNGG 2 cut(s) 256, 328
AgsI TTSAA 3 cut(s) 166, 193, 386
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 78
AoxI GGCC 3 cut(s) 79, 105, 307
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 5 cut(s) 23, 85, 229, 311, 359
AvaII GGWCC 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 233
BalI TGGCCA 1 cut(s) 107
BanI GGYRCC 2 cut(s) 148, 230
BbvI GCAGC 1 cut(s) 145
BccI CCATC 7 cut(s) 24, 116, 242, 248, 324, 332, 355
BceAI ACGGC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 61
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 3 cut(s) 150, 232, 428
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 328
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 240, 370
BseLI CCNNNNNNNGG 2 cut(s) 256, 328
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 5
BshFI GGCC 3 cut(s) 81, 107, 309
BshNI GGYRCC 2 cut(s) 148, 230
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 256, 328
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 3 cut(s) 81, 107, 309
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 173
BspANI GGCC 3 cut(s) 81, 107, 309
BspLI GGNNCC 3 cut(s) 150, 232, 428
BspMI ACCTGC 1 cut(s) 61
BspQI GCTCTTC 2 cut(s) 123, 182
BspT107I GGYRCC 2 cut(s) 148, 230
BsrBI CCGCTC 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 123, 182
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 422
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 240, 370
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 220
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 3 cut(s) 81, 107, 309
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 240, 370
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 3 cut(s) 6, 211, 268
CviAII CATG 2 cut(s) 251, 280
CviJI RGCY 5 cut(s) 81, 107, 187, 309, 393
CviKI_1 RGCY 5 cut(s) 81, 107, 187, 309, 393
CviQI GTAC 3 cut(s) 6, 211, 268
DdeI CTNAG 1 cut(s) 422
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 3 cut(s) 79, 105, 307
Eam1104I CTCTTC 2 cut(s) 123, 182
EarI CTCTTC 2 cut(s) 123, 182
Eco47I GGWCC 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 2 cut(s) 254, 283
FaiI YATR 3 cut(s) 252, 281, 432
FatI CATG 2 cut(s) 250, 279
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 2 cut(s) 227, 377
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 3 cut(s) 81, 107, 309
HapII CCGG 1 cut(s) 265
Hin1II CATG 2 cut(s) 254, 283
HpaII CCGG 1 cut(s) 265
HphI GGTGA 5 cut(s) 23, 85, 229, 311, 359
Hpy166II GTNNAC 2 cut(s) 304, 449
Hpy188I TCNGA 2 cut(s) 93, 225
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 304, 449
HpyAV CCTTC 5 cut(s) 44, 88, 187, 199, 220
HpyCH4IV ACGT 2 cut(s) 87, 270
HpyCH4V TGCA 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 2 cut(s) 87, 270
Hsp92II CATG 2 cut(s) 254, 283
Kzo9I GATC 1 cut(s) 220
LguI GCTCTTC 2 cut(s) 123, 182
LpnPI CCDG 6 cut(s) 56, 89, 165, 260, 274, 278
Lsp1109I GCAGC 1 cut(s) 145
MaeII ACGT 2 cut(s) 87, 270
MalI GATC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 175
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 140, 169, 344
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 2 cut(s) 10, 399
MluNI TGGCCA 1 cut(s) 107
MnlI CCTC 6 cut(s) 35, 39, 132, 250, 288, 343
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 399
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 254, 283
NlaIV GGNNCC 3 cut(s) 150, 232, 428
NmeAIII GCCGAG 1 cut(s) 107
PaqCI CACCTGC 1 cut(s) 61
PciSI GCTCTTC 2 cut(s) 123, 182
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 150, 232, 428
PspPI GGNCC 1 cut(s) 297
RsaI GTAC 3 cut(s) 7, 212, 269
RsaNI GTAC 3 cut(s) 6, 211, 268
RseI CAYNNNNRTG 1 cut(s) 113
SapI GCTCTTC 2 cut(s) 123, 182
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 297
SduI GDGCHC 1 cut(s) 233
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 2 cut(s) 10, 399
SsiI CCGC 1 cut(s) 173
TaiI ACGT 2 cut(s) 90, 273
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 10, 399
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 4 cut(s) 26, 169, 390, 450
TspGWI ACGGA 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.