AT2G46780

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0020162
Physical Location & Seq
Forward (+)
19229070 .. 19231539
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46780.2

Sequence Viewer

Length: 1011 bp
ATGGCTCAACAGAGACAATTTCAGATGGAAGGTGGTAATAATAATACAACAGATACCAAGTTGACGAAAATCTTTGTTGGAGGATTAGCTTGGGAGACTCAGAGAGATACAATGAGACGTTACTTTGAACAGTTTGGTGAAATCGTTGAAGCTGTTGTCATTACTGATAAGAACACTGGAAGATCTAAAGGATATGGATTTGTCACGTTTAAGGAAGCTGAAGCAGCGATGAGAGCTTGTCAGAACATGAATCCTGTGATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTGTCTTGGTGCTCAAAAACCTCGTCCTCCTACTTCTCCTCGACATGGAACAGGTAGATTCAGATCACCAGGATCAGGAGTTGGATTAGTTGCTCCTTCTCCTCAGTTTCGAGGCTCTTCTTCTTCCTCTGCTTTTGTTCATCAACAACAACAACAACACACTGCTCAATTCCCATTTCCTTACTCTACTTACGGGTTTTCTGGTTATTCTCAAGAGGGAATGTACCCAATGAACTACTACAATCATCATCTCTATGGAGGACAACAGTTTTCACCATATATGGGACATCCATCAGCAGGATCAACAGGAATGTTCCATGGTTTTTATCCCTACTATCCTCAATACAATGCAGCACAAAGTAGCAATCAAGCTCAAGCTCAAGTTCAAGCTCAACATCACCAAGGTTTCAGCTTTCAATACACTGCTCCTCCTGCTCCTCCTCTGCTGCAATATCCTTACTTGCCTCACCAGCCACACTTCAGTTCTCAGCAGCAATTTAGCTCTCAGCAACCTCCTCCTCCAATCCTCTCCCTCCCAACCTCTCTGGCTCTATCTTTACCTTCATCATCATCACCGTCCTCTTCAACTTCCACCTCAGCTGCAACAACAGCAACAAAAACAGTAGTTATAACTACAGCAACAAAGAAAGCAGAAACTGAAGCTAGCAGCAAAGATGGTAATGAAGCAATGACAACATCAACCATCAAGATAGAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

336

Amino Acids

36.7

Weight (kDa)

9.23

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 24 - 84 6.3e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46780 AT2G46780
malus_domestica MD07G1159100.v1.1
pyrus_communis pycom01g11220 pycom07g15570 pycom07g15580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 920
AclWI GGATC 2 cut(s) 370, 598
AcuI CTGAAG 3 cut(s) 240, 754, 969
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 4 cut(s) 335, 365, 572, 587
AgsI TTSAA 5 cut(s) 128, 149, 677, 707, 876
AjnI CCWGG 1 cut(s) 358
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 7, 89, 109
AlwI GGATC 2 cut(s) 370, 598
AlwNI CAGNNNCTG 1 cut(s) 947
ApeKI GCWGC 6 cut(s) 224, 641, 736, 781, 890, 957
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AsuHPI GGTGA 6 cut(s) 149, 348, 555, 680, 749, 855
AsuNHI GCTAGC 1 cut(s) 953
Bbv12I GWGCWC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 886
BbvI GCAGC 6 cut(s) 236, 653, 723, 793, 877, 969
BccI CCATC 5 cut(s) 19, 257, 589, 959, 1001
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 3 cut(s) 7, 89, 109
BfaI CTAG 1 cut(s) 954
BfmI CTRYAG 1 cut(s) 924
BglII AGATCT 1 cut(s) 182
BisI GCNGC 6 cut(s) 225, 642, 737, 782, 891, 958
BlsI GCNGC 6 cut(s) 226, 643, 738, 783, 892, 959
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BmtI GCTAGC 1 cut(s) 957
Bpu10I CCTNAGC 1 cut(s) 886
BpuEI CTTGAG 3 cut(s) 486, 648, 654
BsaBI GATNNNNATC 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 607, 691
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 365, 572, 587
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 1 cut(s) 352
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 607, 691
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 352
BseLI CCNNNNNNNGG 4 cut(s) 335, 365, 572, 587
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 5 cut(s) 113, 407, 791, 809, 900
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 7 cut(s) 318, 381, 708, 717, 720, 795, 798
BseXI GCAGC 6 cut(s) 236, 653, 723, 793, 877, 969
BsiHKAI GWGCWC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 4 cut(s) 335, 365, 572, 587
BsmAI GTCTC 3 cut(s) 7, 89, 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 182, 353, 362, 590
Bsp19I CCATGG 1 cut(s) 607
BspCNI CTCAG 5 cut(s) 112, 406, 790, 808, 899
BspOI GCTAGC 1 cut(s) 957
BspPI GGATC 2 cut(s) 370, 598
BspQI GCTCTTC 2 cut(s) 265, 412
BsrDI GCAATG 1 cut(s) 984
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 607, 691
BssMI GATC 4 cut(s) 182, 353, 362, 590
BssT1I CCWWGG 2 cut(s) 607, 691
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 4 cut(s) 132, 558, 867, 913
Bst6I CTCTTC 3 cut(s) 265, 412, 877
BstC8I GCNNGC 1 cut(s) 955
BstDEI CTNAG 5 cut(s) 99, 393, 777, 795, 886
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 1 cut(s) 577
BstKTI GATC 4 cut(s) 185, 356, 365, 593
BstMAI GTCTC 3 cut(s) 7, 89, 109
BstMBI GATC 4 cut(s) 182, 353, 362, 590
BstMWI GCNNNNNNNGC 5 cut(s) 224, 233, 722, 760, 899
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 924
BstV1I GCAGC 6 cut(s) 236, 653, 723, 793, 877, 969
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 2 cut(s) 450, 711
BtsIMutI CAGTG 3 cut(s) 174, 450, 711
Cac8I GCNNGC 1 cut(s) 955
CaiI CAGNNNCTG 1 cut(s) 947
Csp6I GTAC 1 cut(s) 514
CviAII CATG 3 cut(s) 247, 335, 608
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 5 cut(s) 99, 393, 777, 795, 886
DpnI GATC 4 cut(s) 184, 355, 364, 592
DpnII GATC 4 cut(s) 182, 353, 362, 590
Eam1104I CTCTTC 3 cut(s) 265, 412, 877
EarI CTCTTC 3 cut(s) 265, 412, 877
Eco130I CCWWGG 2 cut(s) 607, 691
Eco57I CTGAAG 3 cut(s) 240, 754, 969
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 607, 691
ErhI CCWWGG 2 cut(s) 607, 691
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 3 cut(s) 250, 338, 611
FaiI YATR 9 cut(s) 195, 248, 336, 546, 568, 570, 572, 609, 920
FaqI GGGAC 1 cut(s) 588
FatI CATG 3 cut(s) 246, 334, 607
Fnu4HI GCNGC 6 cut(s) 225, 642, 737, 782, 891, 958
FokI GGATG 1 cut(s) 564
Fsp4HI GCNGC 6 cut(s) 225, 642, 737, 782, 891, 958
FspBI CTAG 1 cut(s) 954
GluI GCNGC 6 cut(s) 225, 642, 737, 782, 891, 958
Hin1II CATG 3 cut(s) 250, 338, 611
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 97, 250, 348
HphI GGTGA 6 cut(s) 149, 348, 555, 680, 749, 855
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 4 cut(s) 24, 102, 243, 353
Hpy188III TCNNGA 3 cut(s) 366, 503, 997
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 3 cut(s) 23, 396, 861
HpyCH4III ACNGT 4 cut(s) 132, 558, 867, 913
HpyCH4IV ACGT 2 cut(s) 118, 206
HpyCH4V TGCA 4 cut(s) 282, 641, 739, 893
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 233, 722, 760, 899
HpyF3I CTNAG 5 cut(s) 99, 393, 777, 795, 886
HpySE526I ACGT 2 cut(s) 118, 206
Hsp92II CATG 3 cut(s) 250, 338, 611
Kzo9I GATC 4 cut(s) 182, 353, 362, 590
LguI GCTCTTC 2 cut(s) 265, 412
LmnI GCTCC 3 cut(s) 388, 721, 730
Lsp1109I GCAGC 6 cut(s) 236, 653, 723, 793, 877, 969
MaeI CTAG 1 cut(s) 954
MaeII ACGT 2 cut(s) 118, 206
MaeIII GTNAC 2 cut(s) 119, 202
MalI GATC 4 cut(s) 184, 355, 364, 592
MboI GATC 4 cut(s) 182, 353, 362, 590
MboII GAAGA 7 cut(s) 192, 279, 282, 399, 402, 405, 864
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 4 cut(s) 17, 277, 458, 785
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 58, 352
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 890
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 5 cut(s) 224, 233, 722, 760, 899
NcoI CCATGG 1 cut(s) 607
NdeII GATC 4 cut(s) 182, 353, 362, 590
NheI GCTAGC 1 cut(s) 953
NlaIII CATG 3 cut(s) 250, 338, 611
NmuCI GTSAC 1 cut(s) 202
PciSI GCTCTTC 2 cut(s) 265, 412
PfeI GAWTC 2 cut(s) 250, 348
PkrI GCNGC 6 cut(s) 226, 643, 738, 783, 892, 959
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PsiI TTATAA 1 cut(s) 920
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 543
SapI GCTCTTC 2 cut(s) 265, 412
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 6 cut(s) 225, 642, 737, 782, 891, 958
Sau3AI GATC 4 cut(s) 182, 353, 362, 590
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 924
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 3 cut(s) 501, 663, 669
SmoI CTYRAG 3 cut(s) 501, 663, 669
Sse9I AATT 4 cut(s) 17, 277, 458, 785
SspMI CTAG 1 cut(s) 954
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 2 cut(s) 607, 691
TaaI ACNGT 4 cut(s) 132, 558, 867, 913
TaiI ACGT 2 cut(s) 121, 209
TaqI TCGA 2 cut(s) 331, 400
TasI AATT 4 cut(s) 17, 277, 458, 785
TfiI GAWTC 2 cut(s) 250, 348
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 3 cut(s) 181, 457, 718
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 6 cut(s) 224, 641, 736, 781, 890, 957
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 5 cut(s) 263, 419, 536, 843, 987
TspRI CASTG 3 cut(s) 181, 457, 718
XspI CTAG 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.