MD07G1159100.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0020162
Physical Location & Seq
Forward (+)
23305235 .. 23308502
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1159100.v1.1.491

Sequence Viewer

Length: 882 bp
ATGAATCAAGGAAGGCAAATTCAGATGGTGGGGGGAAGTAATTACATGAACAATCAAGGGCAATACAATGACACAACTTTTACCAAAATCTTTGTGGGAGGGTTGGCCTGGGAGACTCAGAGGGAAACCATGAGAAGGTACTTTGAACAGTTTGGGGAGATCTTGGAGGCTGTTGTGATCACAGATAAAAACACTGGAAGATCCAAGGGTTATGGATTTGTTACATTTAAGGATCCAGAGGCAGCCGTGAGGGCGTGCCAAAATCCATCCCCTGTGATTGATGGAAGGAGGGCAAACTGCAATCTCGCATTTCTTGGTGCACAAAAGACTCGCCCACCAATTCCTCTTCATGGTGCAGGAAGGTTTAGAGCAGCACATAGGTTGGTGGCGCCACCAGCTGCTTATCATGGATCCTCATCAACCTATTTCCCTCAACCCACTGGCCAATACACATTTCCTTATCCAGTTTATGGGTACAATGGATACGCACAAGATTCCATGTATCCCATGAACTATTACGGTGTCTATGGTGGTGGCGGCCAACAATTCTCACCTTACTACACCACCACAACTGGAGGTGCATCTGGGCCAGCTGGAATTTACCAAAATGTCTACCCATTATATGCTCAATATGCTCAGAGTAGTAGTCAGGCTCATGCCCTTGGTGTCCAATATCCCCAAATGTTACAGTACCCTTATTTGCCTCAGCCCTATGGGTCCGCCTCCACAGCTGGGATCCTCTCACTTCCTCCTCCTTCAATGCCAATCACCTCCTCCACAACTACCCCAGGTGAAACAGCAGCCGCAACTGGGGTCACGTCAGCGGGGGCAGACGCCCCACAACCTTCTGGGGTAAATTCTGGGCAGAGTTCTGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

294

Amino Acids

31.42

Weight (kDa)

8.89

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 30 - 87 1.2e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46780 AT2G46780
malus_domestica MD07G1159100.v1.1
pyrus_communis pycom01g11220 pycom07g15570 pycom07g15580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 470
AccI GTMKAC 1 cut(s) 612
AciI CCGC 4 cut(s) 537, 720, 804, 824
AclWI GGATC 7 cut(s) 195, 227, 240, 405, 418, 730, 743
AcoI YGGCCR 2 cut(s) 442, 538
AcsI RAATTY 3 cut(s) 18, 597, 856
AcyI GRCGYC 2 cut(s) 389, 834
AfaI GTAC 3 cut(s) 140, 476, 692
AfiI CCNNNNNNNGG 5 cut(s) 135, 350, 470, 732, 810
AgsI TTSAA 2 cut(s) 146, 759
AjiI CACGTC 1 cut(s) 819
AjnI CCWGG 2 cut(s) 107, 787
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 3 cut(s) 398, 593, 731
AluI AGCT 3 cut(s) 398, 593, 731
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 107
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 7 cut(s) 195, 227, 240, 405, 418, 730, 743
AoxI GGCC 4 cut(s) 105, 442, 538, 587
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 4 cut(s) 242, 371, 398, 800
ApoI RAATTY 3 cut(s) 18, 597, 856
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 587, 717
AsuHPI GGTGA 3 cut(s) 543, 760, 803
AvaII GGWCC 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 322
BalI TGGCCA 1 cut(s) 444
BamHI GGATCC 3 cut(s) 232, 410, 735
BanI GGYRCC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 322
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 4 cut(s) 254, 383, 385, 812
BccI CCATC 3 cut(s) 19, 274, 275
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 2 cut(s) 109, 789
BciVI GTATCC 2 cut(s) 476, 513
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 392
BfuI GTATCC 2 cut(s) 476, 513
BglI GCCNNNNNGGC 1 cut(s) 251
BglII AGATCT 1 cut(s) 159
BisI GCNGC 6 cut(s) 243, 372, 399, 538, 801, 804
BlsI GCNGC 6 cut(s) 244, 373, 400, 539, 802, 805
Bme1390I CCNGG 2 cut(s) 109, 789
Bme18I GGWCC 1 cut(s) 717
BmgBI CACGTC 1 cut(s) 819
BmgT120I GGNCC 2 cut(s) 587, 717
BmiI GGNNCC 5 cut(s) 234, 390, 412, 718, 737
BmrFI CCNGG 2 cut(s) 109, 789
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 1 cut(s) 590
BmuI ACTGGG 1 cut(s) 819
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 705
BsaBI GATNNNNATC 1 cut(s) 415
BsaHI GRCGYC 2 cut(s) 389, 834
BsaJI CCNNGG 4 cut(s) 108, 204, 661, 787
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 350, 470, 732, 810
Bse1I ACTGG 5 cut(s) 199, 445, 464, 577, 814
Bse8I GATNNNNATC 1 cut(s) 415
BseBI CCWGG 2 cut(s) 109, 789
BseDI CCNNGG 4 cut(s) 108, 204, 661, 787
BseGI GGATG 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 415
BseLI CCNNNNNNNGG 5 cut(s) 135, 350, 470, 732, 810
BseMII CTCAG 3 cut(s) 131, 650, 719
BseNI ACTGG 5 cut(s) 199, 445, 464, 577, 814
BseRI GAGGAG 2 cut(s) 741, 763
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 4 cut(s) 254, 383, 385, 812
BseYI CCCAGC 1 cut(s) 731
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 4 cut(s) 107, 444, 540, 589
BshNI GGYRCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 322
BslI CCNNNNNNNGG 5 cut(s) 135, 350, 470, 732, 810
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 4 cut(s) 107, 444, 540, 589
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 6 cut(s) 159, 177, 200, 232, 410, 735
BspACI CCGC 4 cut(s) 537, 720, 804, 824
BspANI GGCC 4 cut(s) 107, 444, 540, 589
BspCNI CTCAG 3 cut(s) 130, 649, 718
BspLI GGNNCC 5 cut(s) 234, 390, 412, 718, 737
BspPI GGATC 7 cut(s) 195, 227, 240, 405, 418, 730, 743
BspT107I GGYRCC 1 cut(s) 388
BsrI ACTGG 5 cut(s) 199, 445, 464, 577, 814
BssECI CCNNGG 4 cut(s) 108, 204, 661, 787
BssMI GATC 6 cut(s) 159, 177, 200, 232, 410, 735
BssNI GRCGYC 2 cut(s) 389, 834
BssT1I CCWWGG 2 cut(s) 204, 661
Bst2UI CCWGG 2 cut(s) 109, 789
Bst4CI ACNGT 3 cut(s) 150, 521, 690
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 2 cut(s) 389, 834
BstC8I GCNNGC 2 cut(s) 256, 591
BstDEI CTNAG 3 cut(s) 117, 636, 705
BstF5I GGATG 1 cut(s) 266
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 6 cut(s) 162, 180, 203, 235, 413, 738
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 6 cut(s) 159, 177, 200, 232, 410, 735
BstMWI GCNNNNNNNGC 4 cut(s) 251, 395, 632, 728
BstNI CCWGG 2 cut(s) 109, 789
BstSCI CCNGG 2 cut(s) 107, 787
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 254, 383, 385, 812
BstX2I RGATCY 5 cut(s) 159, 200, 232, 410, 735
BstYI RGATCY 5 cut(s) 159, 200, 232, 410, 735
BsuI GTATCC 2 cut(s) 476, 513
BsuRI GGCC 4 cut(s) 107, 444, 540, 589
BtrI CACGTC 1 cut(s) 819
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 192, 438
Cac8I GCNNGC 2 cut(s) 256, 591
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 587, 717
CseI GACGC 1 cut(s) 842
Csp6I GTAC 3 cut(s) 139, 475, 691
CviAII CATG 7 cut(s) 46, 130, 350, 407, 499, 508, 656
CviQI GTAC 3 cut(s) 139, 475, 691
DdeI CTNAG 3 cut(s) 117, 636, 705
DinI GGCGCC 1 cut(s) 390
DpnI GATC 6 cut(s) 161, 179, 202, 234, 412, 737
DpnII GATC 6 cut(s) 159, 177, 200, 232, 410, 735
EaeI YGGCCR 2 cut(s) 442, 538
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 1 cut(s) 709
Eco130I CCWWGG 2 cut(s) 204, 661
Eco47I GGWCC 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 107, 787
EcoT14I CCWWGG 2 cut(s) 204, 661
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 2 cut(s) 204, 661
FaeI CATG 7 cut(s) 49, 133, 353, 410, 502, 511, 659
FatI CATG 7 cut(s) 45, 129, 349, 406, 498, 507, 655
FauI CCCGC 1 cut(s) 817
FbaI TGATCA 1 cut(s) 177
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 6 cut(s) 243, 372, 399, 538, 801, 804
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 6 cut(s) 243, 372, 399, 538, 801, 804
GlaI GCGC 1 cut(s) 390
GluI GCNGC 6 cut(s) 243, 372, 399, 538, 801, 804
GsaI CCCAGC 1 cut(s) 735
GsuI CTGGAG 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 107, 444, 540, 589
HgaI GACGC 1 cut(s) 842
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 2 cut(s) 389, 834
Hin1II CATG 7 cut(s) 49, 133, 353, 410, 502, 511, 659
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 4 cut(s) 4, 115, 328, 494
HphI GGTGA 3 cut(s) 543, 760, 803
Hpy166II GTNNAC 2 cut(s) 320, 613
Hpy188I TCNGA 3 cut(s) 24, 120, 639
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 320, 613
HpyAV CCTTC 6 cut(s) 6, 129, 279, 354, 765, 855
HpyCH4III ACNGT 3 cut(s) 150, 521, 690
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 5 cut(s) 300, 320, 356, 581, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 395, 632, 728
HpyF3I CTNAG 3 cut(s) 117, 636, 705
HpySE526I ACGT 1 cut(s) 818
Hsp92I GRCGYC 2 cut(s) 389, 834
Hsp92II CATG 7 cut(s) 49, 133, 353, 410, 502, 511, 659
HspAI GCGC 1 cut(s) 389
KasI GGCGCC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 6 cut(s) 159, 177, 200, 232, 410, 735
Lsp1109I GCAGC 4 cut(s) 254, 383, 385, 812
LweI GCATC 1 cut(s) 590
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 3 cut(s) 220, 684, 814
MalI GATC 6 cut(s) 161, 179, 202, 234, 412, 737
MboI GATC 6 cut(s) 159, 177, 200, 232, 410, 735
MboII GAAGA 2 cut(s) 210, 338
MflI RGATCY 5 cut(s) 159, 200, 232, 410, 735
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 6 cut(s) 18, 40, 339, 545, 597, 856
MluNI TGGCCA 1 cut(s) 444
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 2 cut(s) 109, 322
Mox20I TGGCCA 1 cut(s) 444
MscI TGGCCA 1 cut(s) 444
MseI TTAA 2 cut(s) 228, 880
Msp20I TGGCCA 1 cut(s) 444
MspA1I CMGCKG 4 cut(s) 398, 593, 731, 824
MspR9I CCNGG 2 cut(s) 109, 789
MvaI CCWGG 2 cut(s) 109, 789
MwoI GCNNNNNNNGC 4 cut(s) 251, 395, 632, 728
NarI GGCGCC 1 cut(s) 389
NdeII GATC 6 cut(s) 159, 177, 200, 232, 410, 735
NlaIII CATG 7 cut(s) 49, 133, 353, 410, 502, 511, 659
NlaIV GGNNCC 5 cut(s) 234, 390, 412, 718, 737
NmuCI GTSAC 1 cut(s) 814
PfeI GAWTC 2 cut(s) 4, 494
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 6 cut(s) 244, 373, 400, 539, 802, 805
PleI GAGTC 2 cut(s) 109, 322
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 2 cut(s) 109, 322
Psp6I CCWGG 2 cut(s) 107, 787
PspFI CCCAGC 1 cut(s) 731
PspGI CCWGG 2 cut(s) 107, 787
PspN4I GGNNCC 5 cut(s) 234, 390, 412, 718, 737
PspPI GGNCC 2 cut(s) 587, 717
PsuI RGATCY 5 cut(s) 159, 200, 232, 410, 735
PvuII CAGCTG 3 cut(s) 398, 593, 731
RsaI GTAC 3 cut(s) 140, 476, 692
RsaNI GTAC 3 cut(s) 139, 475, 691
SaqAI TTAA 2 cut(s) 228, 880
SatI GCNGC 6 cut(s) 243, 372, 399, 538, 801, 804
Sau3AI GATC 6 cut(s) 159, 177, 200, 232, 410, 735
Sau96I GGNCC 2 cut(s) 587, 717
SchI GAGTC 2 cut(s) 109, 322
ScrFI CCNGG 2 cut(s) 109, 789
SduI GDGCHC 1 cut(s) 322
SfaNI GCATC 1 cut(s) 590
SfoI GGCGCC 1 cut(s) 390
SinI GGWCC 1 cut(s) 717
Sse9I AATT 6 cut(s) 18, 40, 339, 545, 597, 856
SsiI CCGC 4 cut(s) 537, 720, 804, 824
SspDI GGCGCC 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 107, 787
StyI CCWWGG 2 cut(s) 204, 661
TaaI ACNGT 3 cut(s) 150, 521, 690
TaiI ACGT 1 cut(s) 821
TasI AATT 6 cut(s) 18, 40, 339, 545, 597, 856
TauI GCSGC 2 cut(s) 540, 806
TfiI GAWTC 2 cut(s) 4, 494
Tru1I TTAA 2 cut(s) 228, 880
Tru9I TTAA 2 cut(s) 228, 880
TscAI CASTG 2 cut(s) 199, 445
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 4 cut(s) 242, 371, 398, 800
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 4 cut(s) 17, 62, 338, 524
TspRI CASTG 2 cut(s) 199, 445
Van91I CCANNNNNTGG 1 cut(s) 470
VneI GTGCAC 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 3 cut(s) 18, 597, 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.