pycom01g11220

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0020162
Physical Location & Seq
Forward (+)
12201136 .. 12203044
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11220.1

Sequence Viewer

Length: 1020 bp
ATGATTTTCTCGTTAGGGGAATCGTTGTTGGGGAATCTGAAGATTTGTGAAAAAGAGGCGGTTGTAGAAGAAGAAGAAGCATCCTCATTACAAAAAACCACTTTTTTTTTTTTGGGGTATTTGTTTTTGGATTTGATGAATCAAGGAAGGCAATTTCAGATGGTGGGGGGGATTAATTACATGAATAATCAAGGGCAATACAATGACACAACTTTTACCAAAATCTTTGTGGGAGGGTTGGCCTGGGAGACTCAGAGGGAAACCATGAGAAGGTACTTTGAACAGTTTGGTGAGATCTTGGAGGCTGTTGTGATCACAGATAAAAACACTGGAAGATCCAAGGGTTATGGATTTGTTACATTTAAGGATCCAGAGGCAGCCATGAGGGCATGCCAAAATCCATCCCCTGTGATTGATGGAAGGAGGGCAAACTGCAATCTTGCATCTCTTGGTGCACAAAAGACCCGCCCACCGACTGCTCCCCATGGTGCAGGAAGGTTTAGAGCAGCACATGGGTTGGTGGCTCCACCAGCTGCTTATCATGGATCCTCATCAACCTATTTCCCTCAACCCACTGGCCAATACACATTTCCTTATTCAGCTTATGGGTACACTGGATATTCACAAGATTCCATGTATCCCATGAACTATTACAGTGTCTATGGTGGTGGTGGCCAACAATTCTCACCTTACTACACCACCACAACTGGCGGGGCATCAGGGCCGGCTGGAATTTACCATAATGTCTACCCATTTTATGCTCAATATGCTCAGAATAGTAGCCAGGCTCATGCCCTTGGTGTCCAATATCCCCAAATGGTACAGTACCCTTATTTGCCTCCTCAGCCGTTTGGCTCCACCTCCACAACTGGGATCCTCTCTCTTCCTCCTTTTTCAATGCCAATCACCACCCCTACAACTACTCCAGGTGCAACAGCAGCAGCAACTGGGGTCACATCAGGGGGGGCAGCTGCCCCACAACCTTCTGGGGCACACTCTGAGCAGAATCCTTCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

340

Amino Acids

36.66

Weight (kDa)

6.59

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 75 - 132 2.2e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46780 AT2G46780
malus_domestica MD07G1159100.v1.1
pyrus_communis pycom01g11220 pycom07g15570 pycom07g15580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 747
AciI CCGC 3 cut(s) 59, 466, 711
AclWI GGATC 7 cut(s) 330, 362, 375, 540, 553, 868, 881
AcoI YGGCCR 2 cut(s) 577, 673
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 4 cut(s) 275, 611, 822, 827
AfiI CCNNNNNNNGG 2 cut(s) 270, 870
AgsI TTSAA 3 cut(s) 281, 897, 1014
AjnI CCWGG 3 cut(s) 242, 783, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 3 cut(s) 533, 602, 971
AluI AGCT 3 cut(s) 533, 602, 971
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 1 cut(s) 242
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 7 cut(s) 330, 362, 375, 540, 553, 868, 881
AlwNI CAGNNNCTG 1 cut(s) 947
AoxI GGCC 4 cut(s) 240, 577, 673, 722
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 7 cut(s) 377, 506, 533, 938, 941, 968, 971
ApoI RAATTY 1 cut(s) 732
AseI ATTAAT 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 722
AsuHPI GGTGA 3 cut(s) 302, 678, 898
BaeGI GKGCMC 2 cut(s) 457, 994
BalI TGGCCA 2 cut(s) 579, 675
BamHI GGATCC 3 cut(s) 367, 545, 873
Bbv12I GWGCWC 1 cut(s) 457
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 7 cut(s) 389, 518, 520, 950, 953, 958, 980
BccI CCATC 3 cut(s) 154, 409, 410
BceAI ACGGC 1 cut(s) 832
BciT130I CCWGG 3 cut(s) 244, 785, 927
BciVI GTATCC 1 cut(s) 648
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 648
BglI GCCNNNNNGGC 1 cut(s) 386
BglII AGATCT 1 cut(s) 294
BisI GCNGC 7 cut(s) 378, 507, 534, 939, 942, 969, 972
BlsI GCNGC 7 cut(s) 379, 508, 535, 940, 943, 970, 973
Bme1390I CCNGG 3 cut(s) 244, 785, 927
BmgT120I GGNCC 1 cut(s) 722
BmiI GGNNCC 5 cut(s) 369, 525, 547, 856, 875
BmrFI CCNGG 3 cut(s) 244, 785, 927
BmrI ACTGGG 2 cut(s) 879, 957
BmsI GCATC 3 cut(s) 89, 452, 725
BmuI ACTGGG 2 cut(s) 879, 957
BpmI CTGGAG 1 cut(s) 909
Bpu10I CCTNAGC 1 cut(s) 843
BsaBI GATNNNNATC 1 cut(s) 550
BsaJI CCNNGG 4 cut(s) 243, 339, 484, 796
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 870
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 6 cut(s) 334, 580, 619, 712, 874, 952
Bse8I GATNNNNATC 1 cut(s) 550
BseBI CCWGG 3 cut(s) 244, 785, 927
BseDI CCNNGG 4 cut(s) 243, 339, 484, 796
BseGI GGATG 2 cut(s) 80, 401
BseJI GATNNNNATC 1 cut(s) 550
BseLI CCNNNNNNNGG 2 cut(s) 270, 870
BseMII CTCAG 4 cut(s) 266, 785, 857, 990
BseNI ACTGG 6 cut(s) 334, 580, 619, 712, 874, 952
BseRI GAGGAG 1 cut(s) 831
BseSI GKGCMC 2 cut(s) 457, 994
BseXI GCAGC 7 cut(s) 389, 518, 520, 950, 953, 958, 980
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 4 cut(s) 242, 579, 675, 724
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 725
BslI CCNNNNNNNGG 2 cut(s) 270, 870
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 4 cut(s) 242, 579, 675, 724
Bsp1286I GDGCHC 2 cut(s) 457, 994
Bsp143I GATC 6 cut(s) 294, 312, 335, 367, 545, 873
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 3 cut(s) 59, 466, 711
BspANI GGCC 4 cut(s) 242, 579, 675, 724
BspCNI CTCAG 4 cut(s) 265, 784, 856, 991
BspLI GGNNCC 5 cut(s) 369, 525, 547, 856, 875
BspPI GGATC 7 cut(s) 330, 362, 375, 540, 553, 868, 881
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 6 cut(s) 334, 580, 619, 712, 874, 952
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 4 cut(s) 243, 339, 484, 796
BssMI GATC 6 cut(s) 294, 312, 335, 367, 545, 873
BssT1I CCWWGG 3 cut(s) 339, 484, 796
Bst2UI CCWGG 3 cut(s) 244, 785, 927
Bst4CI ACNGT 3 cut(s) 285, 656, 825
Bst6I CTCTTC 1 cut(s) 888
BstC8I GCNNGC 2 cut(s) 391, 726
BstDEI CTNAG 4 cut(s) 252, 771, 843, 999
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 2 cut(s) 80, 401
BstKTI GATC 6 cut(s) 297, 315, 338, 370, 548, 876
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 6 cut(s) 294, 312, 335, 367, 545, 873
BstMWI GCNNNNNNNGC 5 cut(s) 386, 530, 767, 844, 938
BstNI CCWGG 3 cut(s) 244, 785, 927
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 3 cut(s) 242, 783, 925
BstSLI GKGCMC 2 cut(s) 457, 994
BstV1I GCAGC 7 cut(s) 389, 518, 520, 950, 953, 958, 980
BstX2I RGATCY 5 cut(s) 294, 335, 367, 545, 873
BstYI RGATCY 5 cut(s) 294, 335, 367, 545, 873
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 4 cut(s) 242, 579, 675, 724
BtgI CCRYGG 1 cut(s) 484
BtsCI GGATG 2 cut(s) 80, 401
BtsIMutI CAGTG 4 cut(s) 327, 573, 612, 661
Cac8I GCNNGC 2 cut(s) 391, 726
CaiI CAGNNNCTG 1 cut(s) 947
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 722
Csp6I GTAC 4 cut(s) 274, 610, 821, 826
CviQI GTAC 4 cut(s) 274, 610, 821, 826
DdeI CTNAG 4 cut(s) 252, 771, 843, 999
DpnI GATC 6 cut(s) 296, 314, 337, 369, 547, 875
DpnII GATC 6 cut(s) 294, 312, 335, 367, 545, 873
EaeI YGGCCR 2 cut(s) 577, 673
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
Eco130I CCWWGG 3 cut(s) 339, 484, 796
Eco57I CTGAAG 1 cut(s) 59
EcoRII CCWGG 3 cut(s) 242, 783, 925
EcoT14I CCWWGG 3 cut(s) 339, 484, 796
ErhI CCWWGG 3 cut(s) 339, 484, 796
FauI CCCGC 2 cut(s) 473, 704
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 7 cut(s) 378, 507, 534, 939, 942, 969, 972
FokI GGATG 2 cut(s) 67, 388
Fsp4HI GCNGC 7 cut(s) 378, 507, 534, 939, 942, 969, 972
GluI GCNGC 7 cut(s) 378, 507, 534, 939, 942, 969, 972
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 4 cut(s) 242, 579, 675, 724
HapII CCGG 1 cut(s) 725
HinfI GANTC 6 cut(s) 20, 34, 139, 250, 629, 1006
HpaII CCGG 1 cut(s) 725
HphI GGTGA 3 cut(s) 302, 678, 898
Hpy166II GTNNAC 3 cut(s) 455, 612, 748
Hpy188I TCNGA 5 cut(s) 39, 159, 255, 774, 1000
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 3 cut(s) 455, 612, 748
HpyAV CCTTC 6 cut(s) 141, 264, 414, 489, 993, 1020
HpyCH4III ACNGT 3 cut(s) 285, 656, 825
HpyCH4V TGCA 5 cut(s) 435, 443, 455, 491, 932
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 530, 767, 844, 938
HpyF3I CTNAG 4 cut(s) 252, 771, 843, 999
KroI GCCGGC 1 cut(s) 724
KroNI GCCGGC 1 cut(s) 726
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 6 cut(s) 294, 312, 335, 367, 545, 873
LmnI GCTCC 3 cut(s) 484, 529, 860
Lsp1109I GCAGC 7 cut(s) 389, 518, 520, 950, 953, 958, 980
LweI GCATC 3 cut(s) 89, 452, 725
MaeIII GTNAC 2 cut(s) 355, 952
MalI GATC 6 cut(s) 296, 314, 337, 369, 547, 875
MboI GATC 6 cut(s) 294, 312, 335, 367, 545, 873
MboII GAAGA 6 cut(s) 52, 80, 83, 86, 345, 875
MflI RGATCY 5 cut(s) 294, 335, 367, 545, 873
MhlI GDGCHC 2 cut(s) 457, 994
MlsI TGGCCA 2 cut(s) 579, 675
MluCI AATT 4 cut(s) 152, 175, 680, 732
MluNI TGGCCA 2 cut(s) 579, 675
MlyI GAGTC 1 cut(s) 244
Mox20I TGGCCA 2 cut(s) 579, 675
MroNI GCCGGC 1 cut(s) 724
MscI TGGCCA 2 cut(s) 579, 675
MseI TTAA 3 cut(s) 174, 363, 1018
Msp20I TGGCCA 2 cut(s) 579, 675
MspA1I CMGCKG 2 cut(s) 533, 971
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 3 cut(s) 244, 785, 927
MvaI CCWGG 3 cut(s) 244, 785, 927
MwoI GCNNNNNNNGC 5 cut(s) 386, 530, 767, 844, 938
NaeI GCCGGC 1 cut(s) 726
NcoI CCATGG 1 cut(s) 484
NdeII GATC 6 cut(s) 294, 312, 335, 367, 545, 873
NgoMIV GCCGGC 1 cut(s) 724
NlaIV GGNNCC 5 cut(s) 369, 525, 547, 856, 875
NmuCI GTSAC 1 cut(s) 952
NspI RCATGY 1 cut(s) 393
PaeI GCATGC 1 cut(s) 393
PdiI GCCGGC 1 cut(s) 726
PfeI GAWTC 5 cut(s) 20, 34, 139, 629, 1006
PkrI GCNGC 7 cut(s) 379, 508, 535, 940, 943, 970, 973
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 174
Psp6I CCWGG 3 cut(s) 242, 783, 925
PspGI CCWGG 3 cut(s) 242, 783, 925
PspN4I GGNNCC 5 cut(s) 369, 525, 547, 856, 875
PspPI GGNCC 1 cut(s) 722
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 5 cut(s) 294, 335, 367, 545, 873
PvuII CAGCTG 2 cut(s) 533, 971
RsaI GTAC 4 cut(s) 275, 611, 822, 827
RsaNI GTAC 4 cut(s) 274, 610, 821, 826
SaqAI TTAA 3 cut(s) 174, 363, 1018
SatI GCNGC 7 cut(s) 378, 507, 534, 939, 942, 969, 972
Sau3AI GATC 6 cut(s) 294, 312, 335, 367, 545, 873
Sau96I GGNCC 1 cut(s) 722
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 3 cut(s) 244, 785, 927
SduI GDGCHC 2 cut(s) 457, 994
SfaNI GCATC 3 cut(s) 89, 452, 725
SphI GCATGC 1 cut(s) 393
Sse9I AATT 4 cut(s) 152, 175, 680, 732
SsiI CCGC 3 cut(s) 59, 466, 711
StyD4I CCNGG 3 cut(s) 242, 783, 925
StyI CCWWGG 3 cut(s) 339, 484, 796
TaaI ACNGT 3 cut(s) 285, 656, 825
TasI AATT 4 cut(s) 152, 175, 680, 732
TfiI GAWTC 5 cut(s) 20, 34, 139, 629, 1006
Tru1I TTAA 3 cut(s) 174, 363, 1018
Tru9I TTAA 3 cut(s) 174, 363, 1018
TscAI CASTG 4 cut(s) 334, 580, 619, 661
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 7 cut(s) 377, 506, 533, 938, 941, 968, 971
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 3 cut(s) 152, 197, 659
TspRI CASTG 4 cut(s) 334, 580, 619, 661
VneI GTGCAC 1 cut(s) 453
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 732
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.