Signal recognition particle
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47450 |
| fragaria_vesca | FvH4_2g16010 |
| malus_domestica | MD05G1128900.v1.1 |
| prunus_persica | Prupe.8G173000_v2.0.a1 |
| pyrus_communis | pycom05g12490 |
| rosa_chinensis | RchiOBHm_Chr6g0279541 |
| rosa_laevigata | RLG00000013137 |
| rosa_roxburghii | Rroxscaffold_7G00188820 |
| rosa_rugosa | Rorug06G0125400 |
| rosa_samantha | Rh6AG234400 Rh6BG238800 Rh6CG240800 Rh6DG232300 |
| rosa_wichuraiana | Rw6G020460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 455, 1036 |
| AatII | GACGTC | 1 cut(s) | 459 |
| Acc36I | ACCTGC | 1 cut(s) | 494 |
| AccI | GTMKAC | 1 cut(s) | 1071 |
| AciI | CCGC | 6 cut(s) | 171, 284, 539, 602, 917, 965 |
| AclWI | GGATC | 1 cut(s) | 146 |
| AcoI | YGGCCR | 3 cut(s) | 18, 325, 478 |
| AcuI | CTGAAG | 1 cut(s) | 734 |
| AcvI | CACGTG | 1 cut(s) | 913 |
| AcyI | GRCGYC | 2 cut(s) | 456, 722 |
| AfaI | GTAC | 7 cut(s) | 177, 248, 305, 383, 806, 909, 956 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 283 |
| AflIII | ACRYGT | 1 cut(s) | 910 |
| AgsI | TTSAA | 2 cut(s) | 662, 857 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 373 |
| AjnI | CCWGG | 3 cut(s) | 392, 441, 783 |
| AleI | CACNNNNGTG | 1 cut(s) | 394 |
| AluBI | AGCT | 7 cut(s) | 145, 161, 354, 407, 439, 646, 653 |
| AluI | AGCT | 7 cut(s) | 145, 161, 354, 407, 439, 646, 653 |
| Alw21I | GWGCWC | 1 cut(s) | 37 |
| Alw26I | GTCTC | 6 cut(s) | 57, 63, 380, 447, 561, 987 |
| AlwI | GGATC | 1 cut(s) | 146 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 55, 430, 442 |
| AoxI | GGCC | 5 cut(s) | 18, 325, 426, 478, 617 |
| ApeKI | GCWGC | 3 cut(s) | 362, 404, 592 |
| AspLEI | GCGC | 2 cut(s) | 592, 637 |
| AspS9I | GGNCC | 2 cut(s) | 427, 448 |
| AsuHPI | GGTGA | 1 cut(s) | 910 |
| AvaII | GGWCC | 1 cut(s) | 448 |
| AxyI | CCTNAGG | 1 cut(s) | 1059 |
| BalI | TGGCCA | 1 cut(s) | 20 |
| BbrPI | CACGTG | 1 cut(s) | 913 |
| BbsI | GAAGAC | 4 cut(s) | 4, 675, 722, 1010 |
| Bbv12I | GWGCWC | 1 cut(s) | 37 |
| BbvI | GCAGC | 3 cut(s) | 374, 416, 579 |
| BccI | CCATC | 6 cut(s) | 54, 355, 864, 938, 992, 1016 |
| BceAI | ACGGC | 9 cut(s) | 158, 297, 340, 417, 449, 493, 501, 603, 702 |
| BciT130I | CCWGG | 3 cut(s) | 394, 443, 785 |
| BciVI | GTATCC | 1 cut(s) | 19 |
| BclI | TGATCA | 1 cut(s) | 774 |
| BcoDI | GTCTC | 6 cut(s) | 57, 63, 380, 447, 561, 987 |
| BfaI | CTAG | 3 cut(s) | 38, 408, 698 |
| BfmI | CTRYAG | 1 cut(s) | 960 |
| BfoI | RGCGCY | 2 cut(s) | 593, 638 |
| BfuAI | ACCTGC | 1 cut(s) | 494 |
| BfuI | GTATCC | 1 cut(s) | 19 |
| BisI | GCNGC | 5 cut(s) | 171, 363, 405, 593, 603 |
| BlsI | GCNGC | 5 cut(s) | 172, 364, 406, 594, 604 |
| Bme1390I | CCNGG | 3 cut(s) | 394, 443, 785 |
| Bme18I | GGWCC | 1 cut(s) | 448 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 373 |
| BmgT120I | GGNCC | 2 cut(s) | 427, 448 |
| BmiI | GGNNCC | 4 cut(s) | 295, 345, 550, 1056 |
| BmrFI | CCNGG | 3 cut(s) | 394, 443, 785 |
| BmsI | GCATC | 4 cut(s) | 72, 451, 729, 1033 |
| BpiI | GAAGAC | 4 cut(s) | 4, 675, 722, 1010 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 540, 572 |
| BpmI | CTGGAG | 3 cut(s) | 464, 567, 971 |
| Bpu10I | CCTNAGC | 1 cut(s) | 930 |
| BsaAI | YACGTR | 2 cut(s) | 613, 913 |
| BsaHI | GRCGYC | 2 cut(s) | 456, 722 |
| BsaJI | CCNNGG | 7 cut(s) | 21, 154, 207, 297, 392, 465, 810 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 283 |
| Bse21I | CCTNAGG | 1 cut(s) | 1059 |
| BseBI | CCWGG | 3 cut(s) | 394, 443, 785 |
| BseDI | CCNNGG | 7 cut(s) | 21, 154, 207, 297, 392, 465, 810 |
| BseGI | GGATG | 2 cut(s) | 823, 949 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseMII | CTCAG | 1 cut(s) | 1073 |
| BseRI | GAGGAG | 4 cut(s) | 66, 171, 193, 766 |
| BseX3I | CGGCCG | 1 cut(s) | 478 |
| BseXI | GCAGC | 3 cut(s) | 374, 416, 579 |
| BseYI | CCCAGC | 1 cut(s) | 646 |
| BsgI | GTGCAG | 1 cut(s) | 578 |
| Bsh1285I | CGRYCG | 1 cut(s) | 481 |
| BshFI | GGCC | 5 cut(s) | 20, 327, 428, 480, 619 |
| BsiEI | CGRYCG | 1 cut(s) | 481 |
| BsiHKAI | GWGCWC | 1 cut(s) | 37 |
| BsiSI | CCGG | 2 cut(s) | 481, 620 |
| BsiWI | CGTACG | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BsmAI | GTCTC | 6 cut(s) | 57, 63, 380, 447, 561, 987 |
| BsmBI | CGTCTC | 2 cut(s) | 447, 987 |
| BsnI | GGCC | 5 cut(s) | 20, 327, 428, 480, 619 |
| Bsp1286I | GDGCHC | 1 cut(s) | 37 |
| Bsp1407I | TGTACA | 1 cut(s) | 907 |
| Bsp143I | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| Bsp19I | CCATGG | 2 cut(s) | 21, 297 |
| BspACI | CCGC | 6 cut(s) | 171, 284, 539, 602, 917, 965 |
| BspANI | GGCC | 5 cut(s) | 20, 327, 428, 480, 619 |
| BspCNI | CTCAG | 1 cut(s) | 1072 |
| BspLI | GGNNCC | 4 cut(s) | 295, 345, 550, 1056 |
| BspMI | ACCTGC | 1 cut(s) | 494 |
| BspPI | GGATC | 1 cut(s) | 146 |
| BsrGI | TGTACA | 1 cut(s) | 907 |
| BssECI | CCNNGG | 7 cut(s) | 21, 154, 207, 297, 392, 465, 810 |
| BssMI | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| BssNI | GRCGYC | 2 cut(s) | 456, 722 |
| BssT1I | CCWWGG | 2 cut(s) | 21, 297 |
| Bst2UI | CCWGG | 3 cut(s) | 394, 443, 785 |
| Bst4CI | ACNGT | 1 cut(s) | 881 |
| Bst6I | CTCTTC | 2 cut(s) | 207, 977 |
| BstACI | GRCGYC | 2 cut(s) | 456, 722 |
| BstAUI | TGTACA | 1 cut(s) | 907 |
| BstBAI | YACGTR | 2 cut(s) | 613, 913 |
| BstC8I | GCNNGC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 2 cut(s) | 930, 1059 |
| BstDSI | CCRYGG | 4 cut(s) | 21, 207, 297, 465 |
| BstF5I | GGATG | 2 cut(s) | 823, 949 |
| BstH2I | RGCGCY | 2 cut(s) | 593, 638 |
| BstHHI | GCGC | 2 cut(s) | 592, 637 |
| BstKTI | GATC | 7 cut(s) | 132, 141, 267, 556, 777, 825, 978 |
| BstMAI | GTCTC | 6 cut(s) | 57, 63, 380, 447, 561, 987 |
| BstMBI | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| BstMCI | CGRYCG | 1 cut(s) | 481 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 413, 643 |
| BstNI | CCWGG | 3 cut(s) | 394, 443, 785 |
| BstSCI | CCNGG | 3 cut(s) | 392, 441, 783 |
| BstSFI | CTRYAG | 1 cut(s) | 960 |
| BstV1I | GCAGC | 3 cut(s) | 374, 416, 579 |
| BstV2I | GAAGAC | 4 cut(s) | 4, 675, 722, 1010 |
| BstZI | CGGCCG | 1 cut(s) | 478 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1059 |
| BsuI | GTATCC | 1 cut(s) | 19 |
| BsuRI | GGCC | 5 cut(s) | 20, 327, 428, 480, 619 |
| BtgI | CCRYGG | 4 cut(s) | 21, 207, 297, 465 |
| BtgZI | GCGATG | 1 cut(s) | 343 |
| BtsCI | GGATG | 2 cut(s) | 823, 949 |
| BveI | ACCTGC | 1 cut(s) | 494 |
| Cac8I | GCNNGC | 1 cut(s) | 426 |
| CaiI | CAGNNNCTG | 3 cut(s) | 55, 430, 442 |
| CfoI | GCGC | 2 cut(s) | 592, 637 |
| Cfr13I | GGNCC | 2 cut(s) | 427, 448 |
| CseI | GACGC | 1 cut(s) | 730 |
| Csp6I | GTAC | 7 cut(s) | 176, 247, 304, 382, 805, 908, 955 |
| CviAII | CATG | 4 cut(s) | 22, 298, 571, 598 |
| CviQI | GTAC | 7 cut(s) | 176, 247, 304, 382, 805, 908, 955 |
| DdeI | CTNAG | 2 cut(s) | 930, 1059 |
| DpnI | GATC | 7 cut(s) | 131, 140, 266, 555, 776, 824, 977 |
| DpnII | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 455, 1036 |
| DriI | GACNNNNNGTC | 1 cut(s) | 373 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 455, 1036 |
| EaeI | YGGCCR | 3 cut(s) | 18, 325, 478 |
| EagI | CGGCCG | 1 cut(s) | 478 |
| Eam1104I | CTCTTC | 2 cut(s) | 207, 977 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 373 |
| EarI | CTCTTC | 2 cut(s) | 207, 977 |
| EciI | GGCGGA | 2 cut(s) | 554, 932 |
| EclXI | CGGCCG | 1 cut(s) | 478 |
| Eco130I | CCWWGG | 2 cut(s) | 21, 297 |
| Eco47I | GGWCC | 1 cut(s) | 448 |
| Eco52I | CGGCCG | 1 cut(s) | 478 |
| Eco57I | CTGAAG | 1 cut(s) | 734 |
| Eco72I | CACGTG | 1 cut(s) | 913 |
| Eco81I | CCTNAGG | 1 cut(s) | 1059 |
| EcoO109I | RGGNCCY | 1 cut(s) | 427 |
| EcoRII | CCWGG | 3 cut(s) | 392, 441, 783 |
| EcoT14I | CCWWGG | 2 cut(s) | 21, 297 |
| ErhI | CCWWGG | 2 cut(s) | 21, 297 |
| Esp3I | CGTCTC | 2 cut(s) | 447, 987 |
| FaeI | CATG | 4 cut(s) | 25, 301, 574, 601 |
| FaiI | YATR | 7 cut(s) | 23, 164, 166, 299, 572, 599, 1037 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 31 |
| FatI | CATG | 4 cut(s) | 21, 297, 570, 597 |
| FauI | CCCGC | 1 cut(s) | 277 |
| FbaI | TGATCA | 1 cut(s) | 774 |
| FblI | GTMKAC | 1 cut(s) | 1071 |
| Fnu4HI | GCNGC | 5 cut(s) | 171, 363, 405, 593, 603 |
| FokI | GGATG | 2 cut(s) | 830, 956 |
| Fsp4HI | GCNGC | 5 cut(s) | 171, 363, 405, 593, 603 |
| FspBI | CTAG | 3 cut(s) | 38, 408, 698 |
| GlaI | GCGC | 2 cut(s) | 591, 636 |
| GluI | GCNGC | 5 cut(s) | 171, 363, 405, 593, 603 |
| GsaI | CCCAGC | 1 cut(s) | 650 |
| GsuI | CTGGAG | 3 cut(s) | 464, 567, 971 |
| HaeII | RGCGCY | 2 cut(s) | 593, 638 |
| HaeIII | GGCC | 5 cut(s) | 20, 327, 428, 480, 619 |
| HapII | CCGG | 2 cut(s) | 481, 620 |
| HgaI | GACGC | 1 cut(s) | 730 |
| HhaI | GCGC | 2 cut(s) | 592, 637 |
| Hin1I | GRCGYC | 2 cut(s) | 456, 722 |
| Hin1II | CATG | 4 cut(s) | 25, 301, 574, 601 |
| Hin6I | GCGC | 2 cut(s) | 590, 635 |
| HinP1I | GCGC | 2 cut(s) | 590, 635 |
| HincII | GTYRAC | 2 cut(s) | 684, 1072 |
| HindII | GTYRAC | 2 cut(s) | 684, 1072 |
| HinfI | GANTC | 5 cut(s) | 119, 233, 709, 733, 1073 |
| HpaI | GTTAAC | 1 cut(s) | 684 |
| HpaII | CCGG | 2 cut(s) | 481, 620 |
| HphI | GGTGA | 1 cut(s) | 910 |
| Hpy166II | GTNNAC | 7 cut(s) | 259, 399, 469, 684, 908, 910, 1072 |
| Hpy188I | TCNGA | 8 cut(s) | 134, 155, 379, 517, 714, 738, 869, 1042 |
| Hpy188III | TCNNGA | 4 cut(s) | 557, 748, 979, 1061 |
| Hpy8I | GTNNAC | 7 cut(s) | 259, 399, 469, 684, 908, 910, 1072 |
| Hpy99I | CGWCG | 4 cut(s) | 340, 422, 461, 724 |
| HpyAV | CCTTC | 5 cut(s) | 284, 313, 721, 782, 868 |
| HpyCH4III | ACNGT | 1 cut(s) | 881 |
| HpyCH4IV | ACGT | 5 cut(s) | 369, 456, 612, 852, 912 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 595, 742 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 413, 643 |
| HpyF3I | CTNAG | 2 cut(s) | 930, 1059 |
| HpySE526I | ACGT | 5 cut(s) | 369, 456, 612, 852, 912 |
| Hsp92I | GRCGYC | 2 cut(s) | 456, 722 |
| Hsp92II | CATG | 4 cut(s) | 25, 301, 574, 601 |
| HspAI | GCGC | 2 cut(s) | 590, 635 |
| Ksp22I | TGATCA | 1 cut(s) | 774 |
| KspAI | GTTAAC | 1 cut(s) | 684 |
| Kzo9I | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| LmnI | GCTCC | 7 cut(s) | 158, 293, 444, 548, 643, 650, 1054 |
| Lsp1109I | GCAGC | 3 cut(s) | 374, 416, 579 |
| LweI | GCATC | 4 cut(s) | 72, 451, 729, 1033 |
| MaeI | CTAG | 3 cut(s) | 38, 408, 698 |
| MaeII | ACGT | 5 cut(s) | 369, 456, 612, 852, 912 |
| MaeIII | GTNAC | 2 cut(s) | 432, 608 |
| MalI | GATC | 7 cut(s) | 131, 140, 266, 555, 776, 824, 977 |
| MboI | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| MhlI | GDGCHC | 1 cut(s) | 37 |
| MlsI | TGGCCA | 1 cut(s) | 20 |
| MluCI | AATT | 1 cut(s) | 756 |
| MluNI | TGGCCA | 1 cut(s) | 20 |
| MlyI | GAGTC | 2 cut(s) | 242, 1067 |
| MmeI | TCCRAC | 3 cut(s) | 357, 495, 672 |
| Mox20I | TGGCCA | 1 cut(s) | 20 |
| MscI | TGGCCA | 1 cut(s) | 20 |
| MseI | TTAA | 1 cut(s) | 683 |
| MslI | CAYNNNNRTG | 1 cut(s) | 394 |
| Msp20I | TGGCCA | 1 cut(s) | 20 |
| MspI | CCGG | 2 cut(s) | 481, 620 |
| MspR9I | CCNGG | 3 cut(s) | 394, 443, 785 |
| MvaI | CCWGG | 3 cut(s) | 394, 443, 785 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 413, 643 |
| NcoI | CCATGG | 2 cut(s) | 21, 297 |
| NdeII | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| NlaIII | CATG | 4 cut(s) | 25, 301, 574, 601 |
| NlaIV | GGNNCC | 4 cut(s) | 295, 345, 550, 1056 |
| NmeAIII | GCCGAG | 1 cut(s) | 835 |
| NmuCI | GTSAC | 1 cut(s) | 432 |
| OliI | CACNNNNGTG | 1 cut(s) | 394 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 366, 462, 807 |
| PfeI | GAWTC | 3 cut(s) | 119, 709, 733 |
| Pfl23II | CGTACG | 1 cut(s) | 246 |
| PflFI | GACNNNGTC | 1 cut(s) | 1067 |
| PfoI | TCCNGGA | 2 cut(s) | 441, 783 |
| PkrI | GCNGC | 5 cut(s) | 172, 364, 406, 594, 604 |
| PleI | GAGTC | 2 cut(s) | 241, 1067 |
| PmaCI | CACGTG | 1 cut(s) | 913 |
| PmlI | CACGTG | 1 cut(s) | 913 |
| PpsI | GAGTC | 2 cut(s) | 241, 1067 |
| Ppu21I | YACGTR | 2 cut(s) | 613, 913 |
| Psp6I | CCWGG | 3 cut(s) | 392, 441, 783 |
| PspCI | CACGTG | 1 cut(s) | 913 |
| PspFI | CCCAGC | 1 cut(s) | 646 |
| PspGI | CCWGG | 3 cut(s) | 392, 441, 783 |
| PspLI | CGTACG | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 4 cut(s) | 295, 345, 550, 1056 |
| PspPI | GGNCC | 2 cut(s) | 427, 448 |
| PstNI | CAGNNNCTG | 3 cut(s) | 55, 430, 442 |
| PsyI | GACNNNGTC | 1 cut(s) | 1067 |
| RsaI | GTAC | 7 cut(s) | 177, 248, 305, 383, 806, 909, 956 |
| RsaNI | GTAC | 7 cut(s) | 176, 247, 304, 382, 805, 908, 955 |
| RseI | CAYNNNNRTG | 1 cut(s) | 394 |
| SalI | GTCGAC | 1 cut(s) | 1070 |
| SaqAI | TTAA | 1 cut(s) | 683 |
| SatI | GCNGC | 5 cut(s) | 171, 363, 405, 593, 603 |
| Sau3AI | GATC | 7 cut(s) | 129, 138, 264, 553, 774, 822, 975 |
| Sau96I | GGNCC | 2 cut(s) | 427, 448 |
| SchI | GAGTC | 2 cut(s) | 242, 1067 |
| ScrFI | CCNGG | 3 cut(s) | 394, 443, 785 |
| SduI | GDGCHC | 1 cut(s) | 37 |
| SfaNI | GCATC | 4 cut(s) | 72, 451, 729, 1033 |
| SfcI | CTRYAG | 1 cut(s) | 960 |
| SinI | GGWCC | 1 cut(s) | 448 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 394 |
| Sse9I | AATT | 1 cut(s) | 756 |
| SsiI | CCGC | 6 cut(s) | 171, 284, 539, 602, 917, 965 |
| SspMI | CTAG | 3 cut(s) | 38, 408, 698 |
| StyD4I | CCNGG | 3 cut(s) | 392, 441, 783 |
| StyI | CCWWGG | 2 cut(s) | 21, 297 |
| TaaI | ACNGT | 1 cut(s) | 881 |
| TaiI | ACGT | 5 cut(s) | 372, 459, 615, 855, 915 |
| TaqI | TCGA | 8 cut(s) | 141, 312, 350, 459, 558, 801, 1011, 1071 |
| TaqII | GACCGA | 1 cut(s) | 465 |
| TasI | AATT | 1 cut(s) | 756 |
| TatI | WGTACW | 1 cut(s) | 907 |
| TauI | GCSGC | 2 cut(s) | 173, 605 |
| TfiI | GAWTC | 3 cut(s) | 119, 709, 733 |
| Tru1I | TTAA | 1 cut(s) | 683 |
| Tru9I | TTAA | 1 cut(s) | 683 |
| TseFI | GTSAC | 1 cut(s) | 432 |
| TseI | GCWGC | 3 cut(s) | 362, 404, 592 |
| Tsp45I | GTSAC | 1 cut(s) | 432 |
| TspGWI | ACGGA | 4 cut(s) | 151, 196, 264, 324 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1067 |
| VpaK11BI | GGWCC | 1 cut(s) | 448 |
| XmiI | GTMKAC | 1 cut(s) | 1071 |
| XspI | CTAG | 3 cut(s) | 38, 408, 698 |
| ZraI | GACGTC | 1 cut(s) | 457 |