AT2G47450

Signal recognition particle

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
19472573 .. 19474387
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47450.1

Sequence Viewer

Length: 1122 bp
ATGCAAAAGGTCTTCTTGGCCATGGATACTTGTGCTCTAGTAATCCATCAGTCTCTGTCTCGCATCAAACTTTCTCCTCCCAAATCTTCTTCTTCTTCTTCTTCTGCTTTCTCCCCTGAATCCTTACCGATCAGACGGATCGAGCTGTGTTTCCGAGGAGCTATATGTGCCGCCGTACAAAGAAACTACGAAGAAACGACCTCCTCCGTGGAAGAGGCAGAGGAAGATGATGAGTCATCATCATCGTACGGAGAAGTGAACAAGATCATTGGAAGCCGAACGGCGGGGGAAGGAGCCATGGAGTACCTTATCGAGTGGAAGGACGGCCATTCTCCGTCGTGGGTTCCATCGAGCTACATCGCAGCAGACGTAGTGTCGGAGTACGAGACACCCTGGTGGACGGCAGCTAGAAAAGCCGACGAGCAGGCCCTGTCACAGCTCCTGGAGGACCGAGACGTCGATGCCGTGGACGAAAACGGCCGGACGGCTCTGCTTTTCGTGGCAGGTCTGGGGTCGGACAAGTGCGTAAGGCTTCTGGCGGAGGCTGGAGCCGATCTCGACCACCGAGACATGAGGGGAGGCTTGACGGCGCTGCACATGGCGGCTGGTTACGTGAGGCCGGAGGTGGTGGAGGCGCTGGTGGAGCTGGGAGCTGATATTGAAGTGGAAGACGAGAGAGGGTTAACGGCGTTGGAACTAGCGAGGGAGATTCTGAAGACGACGCCGAAGGGGAATCCGATGCAGTTCGGGAGGAGAATTGGGTTAGAGAAAGTGATCAATGTCCTGGAAGGACAAGTGTTCGAGTACGCCGAGGTGGATGAGATCGTAGAGAAACGAGGGAAAGGCAAAGACGTTGAATATCTGGTCAGATGGAAGGACGGTGGAGATTGCGAGTGGGTGAAAGGTGTACACGTGGCGGAAGATGTGGCTAAGGACTACGAGGATGGGCTGGAGTACGCTGTAGCGGAGAGTGTGATCGGGAAGAGGGTGGGAGACGATGGGAAGACCATCGAGTATCTTGTCAAATGGACTGATATGTCTGATGCCACTTGGGAGCCTCAGGACAATGTCGACTCTACTCTTGTTCTACTCTACCAACAACAACAACCAATGAATGAATGA

Protein Analysis

373

Amino Acids

41.28

Weight (kDa)

4.52

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 134 - 224 1.7e-14 Ankyrin repeats (3 copies)
Ank_5 PF13857 179 - 234 1.6e-10 Ankyrin repeats (many copies)
Chromo PF00385 321 - 366 7.4e-08 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47450
fragaria_vesca FvH4_2g16010
malus_domestica MD05G1128900.v1.1
prunus_persica Prupe.8G173000_v2.0.a1
pyrus_communis pycom05g12490
rosa_chinensis RchiOBHm_Chr6g0279541
rosa_laevigata RLG00000013137
rosa_roxburghii Rroxscaffold_7G00188820
rosa_rugosa Rorug06G0125400
rosa_samantha Rh6AG234400 Rh6BG238800 Rh6CG240800 Rh6DG232300
rosa_wichuraiana Rw6G020460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 455, 1036
AatII GACGTC 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 494
AccI GTMKAC 1 cut(s) 1071
AciI CCGC 6 cut(s) 171, 284, 539, 602, 917, 965
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 3 cut(s) 18, 325, 478
AcuI CTGAAG 1 cut(s) 734
AcvI CACGTG 1 cut(s) 913
AcyI GRCGYC 2 cut(s) 456, 722
AfaI GTAC 7 cut(s) 177, 248, 305, 383, 806, 909, 956
AfiI CCNNNNNNNGG 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 2 cut(s) 662, 857
AhdI GACNNNNNGTC 1 cut(s) 373
AjnI CCWGG 3 cut(s) 392, 441, 783
AleI CACNNNNGTG 1 cut(s) 394
AluBI AGCT 7 cut(s) 145, 161, 354, 407, 439, 646, 653
AluI AGCT 7 cut(s) 145, 161, 354, 407, 439, 646, 653
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 6 cut(s) 57, 63, 380, 447, 561, 987
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 3 cut(s) 55, 430, 442
AoxI GGCC 5 cut(s) 18, 325, 426, 478, 617
ApeKI GCWGC 3 cut(s) 362, 404, 592
AspLEI GCGC 2 cut(s) 592, 637
AspS9I GGNCC 2 cut(s) 427, 448
AsuHPI GGTGA 1 cut(s) 910
AvaII GGWCC 1 cut(s) 448
AxyI CCTNAGG 1 cut(s) 1059
BalI TGGCCA 1 cut(s) 20
BbrPI CACGTG 1 cut(s) 913
BbsI GAAGAC 4 cut(s) 4, 675, 722, 1010
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 374, 416, 579
BccI CCATC 6 cut(s) 54, 355, 864, 938, 992, 1016
BceAI ACGGC 9 cut(s) 158, 297, 340, 417, 449, 493, 501, 603, 702
BciT130I CCWGG 3 cut(s) 394, 443, 785
BciVI GTATCC 1 cut(s) 19
BclI TGATCA 1 cut(s) 774
BcoDI GTCTC 6 cut(s) 57, 63, 380, 447, 561, 987
BfaI CTAG 3 cut(s) 38, 408, 698
BfmI CTRYAG 1 cut(s) 960
BfoI RGCGCY 2 cut(s) 593, 638
BfuAI ACCTGC 1 cut(s) 494
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 5 cut(s) 171, 363, 405, 593, 603
BlsI GCNGC 5 cut(s) 172, 364, 406, 594, 604
Bme1390I CCNGG 3 cut(s) 394, 443, 785
Bme18I GGWCC 1 cut(s) 448
BmeRI GACNNNNNGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 427, 448
BmiI GGNNCC 4 cut(s) 295, 345, 550, 1056
BmrFI CCNGG 3 cut(s) 394, 443, 785
BmsI GCATC 4 cut(s) 72, 451, 729, 1033
BpiI GAAGAC 4 cut(s) 4, 675, 722, 1010
BplI GAGNNNNNCTC 2 cut(s) 540, 572
BpmI CTGGAG 3 cut(s) 464, 567, 971
Bpu10I CCTNAGC 1 cut(s) 930
BsaAI YACGTR 2 cut(s) 613, 913
BsaHI GRCGYC 2 cut(s) 456, 722
BsaJI CCNNGG 7 cut(s) 21, 154, 207, 297, 392, 465, 810
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse21I CCTNAGG 1 cut(s) 1059
BseBI CCWGG 3 cut(s) 394, 443, 785
BseDI CCNNGG 7 cut(s) 21, 154, 207, 297, 392, 465, 810
BseGI GGATG 2 cut(s) 823, 949
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 1073
BseRI GAGGAG 4 cut(s) 66, 171, 193, 766
BseX3I CGGCCG 1 cut(s) 478
BseXI GCAGC 3 cut(s) 374, 416, 579
BseYI CCCAGC 1 cut(s) 646
BsgI GTGCAG 1 cut(s) 578
Bsh1285I CGRYCG 1 cut(s) 481
BshFI GGCC 5 cut(s) 20, 327, 428, 480, 619
BsiEI CGRYCG 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 481, 620
BsiWI CGTACG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 6 cut(s) 57, 63, 380, 447, 561, 987
BsmBI CGTCTC 2 cut(s) 447, 987
BsnI GGCC 5 cut(s) 20, 327, 428, 480, 619
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 907
Bsp143I GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
Bsp19I CCATGG 2 cut(s) 21, 297
BspACI CCGC 6 cut(s) 171, 284, 539, 602, 917, 965
BspANI GGCC 5 cut(s) 20, 327, 428, 480, 619
BspCNI CTCAG 1 cut(s) 1072
BspLI GGNNCC 4 cut(s) 295, 345, 550, 1056
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 907
BssECI CCNNGG 7 cut(s) 21, 154, 207, 297, 392, 465, 810
BssMI GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
BssNI GRCGYC 2 cut(s) 456, 722
BssT1I CCWWGG 2 cut(s) 21, 297
Bst2UI CCWGG 3 cut(s) 394, 443, 785
Bst4CI ACNGT 1 cut(s) 881
Bst6I CTCTTC 2 cut(s) 207, 977
BstACI GRCGYC 2 cut(s) 456, 722
BstAUI TGTACA 1 cut(s) 907
BstBAI YACGTR 2 cut(s) 613, 913
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 930, 1059
BstDSI CCRYGG 4 cut(s) 21, 207, 297, 465
BstF5I GGATG 2 cut(s) 823, 949
BstH2I RGCGCY 2 cut(s) 593, 638
BstHHI GCGC 2 cut(s) 592, 637
BstKTI GATC 7 cut(s) 132, 141, 267, 556, 777, 825, 978
BstMAI GTCTC 6 cut(s) 57, 63, 380, 447, 561, 987
BstMBI GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
BstMCI CGRYCG 1 cut(s) 481
BstMWI GCNNNNNNNGC 3 cut(s) 167, 413, 643
BstNI CCWGG 3 cut(s) 394, 443, 785
BstSCI CCNGG 3 cut(s) 392, 441, 783
BstSFI CTRYAG 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 374, 416, 579
BstV2I GAAGAC 4 cut(s) 4, 675, 722, 1010
BstZI CGGCCG 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 1059
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 5 cut(s) 20, 327, 428, 480, 619
BtgI CCRYGG 4 cut(s) 21, 207, 297, 465
BtgZI GCGATG 1 cut(s) 343
BtsCI GGATG 2 cut(s) 823, 949
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 426
CaiI CAGNNNCTG 3 cut(s) 55, 430, 442
CfoI GCGC 2 cut(s) 592, 637
Cfr13I GGNCC 2 cut(s) 427, 448
CseI GACGC 1 cut(s) 730
Csp6I GTAC 7 cut(s) 176, 247, 304, 382, 805, 908, 955
CviAII CATG 4 cut(s) 22, 298, 571, 598
CviQI GTAC 7 cut(s) 176, 247, 304, 382, 805, 908, 955
DdeI CTNAG 2 cut(s) 930, 1059
DpnI GATC 7 cut(s) 131, 140, 266, 555, 776, 824, 977
DpnII GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
DrdI GACNNNNNNGTC 2 cut(s) 455, 1036
DriI GACNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 2 cut(s) 455, 1036
EaeI YGGCCR 3 cut(s) 18, 325, 478
EagI CGGCCG 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 207, 977
Eam1105I GACNNNNNGTC 1 cut(s) 373
EarI CTCTTC 2 cut(s) 207, 977
EciI GGCGGA 2 cut(s) 554, 932
EclXI CGGCCG 1 cut(s) 478
Eco130I CCWWGG 2 cut(s) 21, 297
Eco47I GGWCC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 734
Eco72I CACGTG 1 cut(s) 913
Eco81I CCTNAGG 1 cut(s) 1059
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 392, 441, 783
EcoT14I CCWWGG 2 cut(s) 21, 297
ErhI CCWWGG 2 cut(s) 21, 297
Esp3I CGTCTC 2 cut(s) 447, 987
FaeI CATG 4 cut(s) 25, 301, 574, 601
FaiI YATR 7 cut(s) 23, 164, 166, 299, 572, 599, 1037
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 4 cut(s) 21, 297, 570, 597
FauI CCCGC 1 cut(s) 277
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 5 cut(s) 171, 363, 405, 593, 603
FokI GGATG 2 cut(s) 830, 956
Fsp4HI GCNGC 5 cut(s) 171, 363, 405, 593, 603
FspBI CTAG 3 cut(s) 38, 408, 698
GlaI GCGC 2 cut(s) 591, 636
GluI GCNGC 5 cut(s) 171, 363, 405, 593, 603
GsaI CCCAGC 1 cut(s) 650
GsuI CTGGAG 3 cut(s) 464, 567, 971
HaeII RGCGCY 2 cut(s) 593, 638
HaeIII GGCC 5 cut(s) 20, 327, 428, 480, 619
HapII CCGG 2 cut(s) 481, 620
HgaI GACGC 1 cut(s) 730
HhaI GCGC 2 cut(s) 592, 637
Hin1I GRCGYC 2 cut(s) 456, 722
Hin1II CATG 4 cut(s) 25, 301, 574, 601
Hin6I GCGC 2 cut(s) 590, 635
HinP1I GCGC 2 cut(s) 590, 635
HincII GTYRAC 2 cut(s) 684, 1072
HindII GTYRAC 2 cut(s) 684, 1072
HinfI GANTC 5 cut(s) 119, 233, 709, 733, 1073
HpaI GTTAAC 1 cut(s) 684
HpaII CCGG 2 cut(s) 481, 620
HphI GGTGA 1 cut(s) 910
Hpy166II GTNNAC 7 cut(s) 259, 399, 469, 684, 908, 910, 1072
Hpy188I TCNGA 8 cut(s) 134, 155, 379, 517, 714, 738, 869, 1042
Hpy188III TCNNGA 4 cut(s) 557, 748, 979, 1061
Hpy8I GTNNAC 7 cut(s) 259, 399, 469, 684, 908, 910, 1072
Hpy99I CGWCG 4 cut(s) 340, 422, 461, 724
HpyAV CCTTC 5 cut(s) 284, 313, 721, 782, 868
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 5 cut(s) 369, 456, 612, 852, 912
HpyCH4V TGCA 3 cut(s) 4, 595, 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 413, 643
HpyF3I CTNAG 2 cut(s) 930, 1059
HpySE526I ACGT 5 cut(s) 369, 456, 612, 852, 912
Hsp92I GRCGYC 2 cut(s) 456, 722
Hsp92II CATG 4 cut(s) 25, 301, 574, 601
HspAI GCGC 2 cut(s) 590, 635
Ksp22I TGATCA 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 684
Kzo9I GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
LmnI GCTCC 7 cut(s) 158, 293, 444, 548, 643, 650, 1054
Lsp1109I GCAGC 3 cut(s) 374, 416, 579
LweI GCATC 4 cut(s) 72, 451, 729, 1033
MaeI CTAG 3 cut(s) 38, 408, 698
MaeII ACGT 5 cut(s) 369, 456, 612, 852, 912
MaeIII GTNAC 2 cut(s) 432, 608
MalI GATC 7 cut(s) 131, 140, 266, 555, 776, 824, 977
MboI GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 756
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 2 cut(s) 242, 1067
MmeI TCCRAC 3 cut(s) 357, 495, 672
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 1 cut(s) 394
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 2 cut(s) 481, 620
MspR9I CCNGG 3 cut(s) 394, 443, 785
MvaI CCWGG 3 cut(s) 394, 443, 785
MwoI GCNNNNNNNGC 3 cut(s) 167, 413, 643
NcoI CCATGG 2 cut(s) 21, 297
NdeII GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
NlaIII CATG 4 cut(s) 25, 301, 574, 601
NlaIV GGNNCC 4 cut(s) 295, 345, 550, 1056
NmeAIII GCCGAG 1 cut(s) 835
NmuCI GTSAC 1 cut(s) 432
OliI CACNNNNGTG 1 cut(s) 394
PcsI WCGNNNNNNNCGW 3 cut(s) 366, 462, 807
PfeI GAWTC 3 cut(s) 119, 709, 733
Pfl23II CGTACG 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 1067
PfoI TCCNGGA 2 cut(s) 441, 783
PkrI GCNGC 5 cut(s) 172, 364, 406, 594, 604
PleI GAGTC 2 cut(s) 241, 1067
PmaCI CACGTG 1 cut(s) 913
PmlI CACGTG 1 cut(s) 913
PpsI GAGTC 2 cut(s) 241, 1067
Ppu21I YACGTR 2 cut(s) 613, 913
Psp6I CCWGG 3 cut(s) 392, 441, 783
PspCI CACGTG 1 cut(s) 913
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 3 cut(s) 392, 441, 783
PspLI CGTACG 1 cut(s) 246
PspN4I GGNNCC 4 cut(s) 295, 345, 550, 1056
PspPI GGNCC 2 cut(s) 427, 448
PstNI CAGNNNCTG 3 cut(s) 55, 430, 442
PsyI GACNNNGTC 1 cut(s) 1067
RsaI GTAC 7 cut(s) 177, 248, 305, 383, 806, 909, 956
RsaNI GTAC 7 cut(s) 176, 247, 304, 382, 805, 908, 955
RseI CAYNNNNRTG 1 cut(s) 394
SalI GTCGAC 1 cut(s) 1070
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 5 cut(s) 171, 363, 405, 593, 603
Sau3AI GATC 7 cut(s) 129, 138, 264, 553, 774, 822, 975
Sau96I GGNCC 2 cut(s) 427, 448
SchI GAGTC 2 cut(s) 242, 1067
ScrFI CCNGG 3 cut(s) 394, 443, 785
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 4 cut(s) 72, 451, 729, 1033
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 394
Sse9I AATT 1 cut(s) 756
SsiI CCGC 6 cut(s) 171, 284, 539, 602, 917, 965
SspMI CTAG 3 cut(s) 38, 408, 698
StyD4I CCNGG 3 cut(s) 392, 441, 783
StyI CCWWGG 2 cut(s) 21, 297
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 5 cut(s) 372, 459, 615, 855, 915
TaqI TCGA 8 cut(s) 141, 312, 350, 459, 558, 801, 1011, 1071
TaqII GACCGA 1 cut(s) 465
TasI AATT 1 cut(s) 756
TatI WGTACW 1 cut(s) 907
TauI GCSGC 2 cut(s) 173, 605
TfiI GAWTC 3 cut(s) 119, 709, 733
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 3 cut(s) 362, 404, 592
Tsp45I GTSAC 1 cut(s) 432
TspGWI ACGGA 4 cut(s) 151, 196, 264, 324
Tth111I GACNNNGTC 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 1071
XspI CTAG 3 cut(s) 38, 408, 698
ZraI GACGTC 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.