pycom05g12490

Signal recognition particle 43 kDa protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
15922364 .. 15923533
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g12490.1

Sequence Viewer

Length: 1170 bp
ATGGACGCTCTCTTCGTCAACCAGTACTCCATCTCCGGCCTCAGACTCTCCCCAAACCTCACCACCCCCACCTCCTCCTTCCCTCCCCAATCCTTCCACCGCCTTAAACCCACCACCTACACCGCCACCAAGCCCACCACCCTCATAACCGTCTCCGCCATCCAAAACCAACAACAAACCCAATCCATCGAAACCCATAACCCACTTCCGCTCCCGGATGCCAATGAACCGGAAGAAAACGACGAGTCCTACGGAGAGGTAGACAAAATCATCGGAAGTAGAGCGCTGGTGGGCGGCAAGGGGATGCAGTACTTAATTTCCTGGAAAGACGGCCATTCGCCATCGTGGGTCCCGTCGGGTTCCATTGCCAAGGACGTGGTGGCGGAGTACGAGAACCCGTGGTGGACCGCCGCCAAAAATGCTGACGAATCCGCACTGAGTCAGCTCATAGCCGCCGAGAACGACTCGCGCGACGTTGACGCAGTTGATGGGGACGGCCGCACTGCTCTCATATTCGTCTCGGGTCTCGGGTCGGAGCAGTGCGTTCGGGTTCTGGCCGAGGCCGGAGCCGATTTGAACCACCGCGATAACGGTGGGGGACTAACAGCGTTACATATGGCTGCTGGTTATGTCCGTCCTGGTGTCGTCAAATTATTGGTGGAGCTGGGTGCGGATCCCGAAGTGGAGGACGAGAGGGGGCGGAAGCCGTTGGATTTGGCGCGGGAGATACTCAAAACGACGCCGCAGGGAAACCCGATGCACTTCGCGAGGCGGTTGGGGTTGGAGGCCGTGATTAGGGAGCTAGAGAGGGTAATATTCGAGTACGCGGAGGTGCAGGAGTTGCTGGAGAAGCGCGGGAAAGGGGATCGCACGGAGTATTTGGTCAAATGGAAGGACGGCGGAGATAACGAGTGGGTCAACGCAAAGCTGATCGGCGAGGATCTGGTAGCGGACTACGAGGCGGGGCTCGAGTACGCGGTGGCGGAAGGGGTGGTGGGAAAGAGAGTTGGGGATGAAGGGAAGCTGGAGTACTTGGTGAAATGGACGGATATAGATGAGGCCACGTGGGAGCCGGAGGAGAACGTTGATCCTGATTTGATCAAGGAGTTTGTGGAGGCCCAAAATTCAAGTGGGCCGGGTAATGTGGAGGAGGCCCAATTGAGAAAGTAG

Protein Analysis

390

Amino Acids

42.72

Weight (kDa)

4.61

Isoelectric Point (pI)

28.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 136 - 230 3.8e-13 Ankyrin repeats (3 copies)
Ank_4 PF13637 177 - 219 6.7e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 185 - 240 3.9e-10 Ankyrin repeats (many copies)
Chromo PF00385 328 - 372 1.7e-10 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47450
fragaria_vesca FvH4_2g16010
malus_domestica MD05G1128900.v1.1
prunus_persica Prupe.8G173000_v2.0.a1
pyrus_communis pycom05g12490
rosa_chinensis RchiOBHm_Chr6g0279541
rosa_laevigata RLG00000013137
rosa_roxburghii Rroxscaffold_7G00188820
rosa_rugosa Rorug06G0125400
rosa_samantha Rh6AG234400 Rh6BG238800 Rh6CG240800 Rh6DG232300
rosa_wichuraiana Rw6G020460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 261
AccII CGCG 8 cut(s) 469, 471, 585, 721, 767, 827, 855, 977
AclI AACGTT 1 cut(s) 1083
AclWI GGATC 5 cut(s) 668, 681, 873, 948, 1082
AcoI YGGCCR 3 cut(s) 331, 496, 555
AcsI RAATTY 1 cut(s) 1123
AcvI CACGTG 1 cut(s) 1065
AcyI GRCGYC 1 cut(s) 740
AfaI GTAC 6 cut(s) 26, 311, 389, 824, 974, 1031
AfeI AGCGCT 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 795
AgsI TTSAA 2 cut(s) 577, 1128
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 320, 637
AluBI AGCT 5 cut(s) 445, 664, 802, 928, 1024
AluI AGCT 5 cut(s) 445, 664, 802, 928, 1024
Alw26I GTCTC 3 cut(s) 157, 523, 530
AlwI GGATC 5 cut(s) 668, 681, 873, 948, 1082
Ama87I CYCGRG 3 cut(s) 520, 527, 968
Aor51HI AGCGCT 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 620
ApoI RAATTY 1 cut(s) 1123
ArsI GACNNNNNNTTYG 1 cut(s) 28
AspLEI GCGC 4 cut(s) 286, 471, 721, 855
AspS9I GGNCC 5 cut(s) 349, 405, 1117, 1133, 1153
AsuC2I CCSGG 2 cut(s) 215, 1137
AsuHPI GGTGA 2 cut(s) 52, 1048
AvaI CYCGRG 3 cut(s) 520, 527, 968
AvaII GGWCC 2 cut(s) 349, 405
BamHI GGATCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 969
BarI GAAGNNNNNNTAC 2 cut(s) 1013, 1045
BbrPI CACGTG 1 cut(s) 1065
BbvI GCAGC 1 cut(s) 607
BccI CCATC 5 cut(s) 38, 167, 194, 349, 482
BceAI ACGGC 5 cut(s) 346, 511, 691, 773, 913
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 2 cut(s) 322, 639
BclI TGATCA 1 cut(s) 1098
BcnI CCSGG 2 cut(s) 215, 1137
BcoDI GTCTC 3 cut(s) 157, 523, 530
BfaI CTAG 1 cut(s) 803
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 6 cut(s) 295, 411, 453, 499, 621, 743
BlsI GCNGC 6 cut(s) 296, 412, 454, 500, 622, 744
BmcAI AGTACT 3 cut(s) 26, 311, 1031
Bme1390I CCNGG 4 cut(s) 215, 322, 639, 1137
Bme18I GGWCC 2 cut(s) 349, 405
BmeT110I CYCGRG 3 cut(s) 520, 527, 968
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 5 cut(s) 349, 405, 1117, 1133, 1153
BmiI GGNNCC 6 cut(s) 350, 351, 361, 568, 675, 1071
BmrFI CCNGG 4 cut(s) 215, 322, 639, 1137
BmsI GCATC 3 cut(s) 208, 294, 747
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpmI CTGGAG 2 cut(s) 866, 1046
BpuMI CCSGG 2 cut(s) 215, 1137
BsaAI YACGTR 1 cut(s) 1065
BsaHI GRCGYC 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 3 cut(s) 369, 398, 558
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 6 cut(s) 11, 17, 41, 47, 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 795
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 322, 639
BseDI CCNNGG 3 cut(s) 369, 398, 558
BseGI GGATG 4 cut(s) 159, 223, 309, 1018
BseLI CCNNNNNNNGG 1 cut(s) 795
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 55, 428
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 3 cut(s) 64, 1091, 1163
BseX3I CGGCCG 1 cut(s) 496
BseXI GCAGC 1 cut(s) 607
BseYI CCCAGC 1 cut(s) 664
BsgI GTGCAG 1 cut(s) 854
Bsh1236I CGCG 8 cut(s) 469, 471, 585, 721, 767, 827, 855, 977
Bsh1285I CGRYCG 1 cut(s) 499
BsiEI CGRYCG 1 cut(s) 499
BsiHKCI CYCGRG 3 cut(s) 520, 527, 968
BsiSI CCGG 6 cut(s) 36, 215, 230, 564, 1073, 1136
BslFI GGGAC 3 cut(s) 335, 506, 612
BslI CCNNNNNNNGG 1 cut(s) 795
BsmAI GTCTC 3 cut(s) 157, 523, 530
BsmBI CGTCTC 2 cut(s) 157, 523
BsmFI GGGAC 3 cut(s) 335, 506, 612
Bso31I GGTCTC 1 cut(s) 530
BsoBI CYCGRG 3 cut(s) 520, 527, 968
Bsp1286I GDGCHC 1 cut(s) 969
Bsp143I GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
Bsp68I TCGCGA 1 cut(s) 767
BspCNI CTCAG 2 cut(s) 54, 429
BspFNI CGCG 8 cut(s) 469, 471, 585, 721, 767, 827, 855, 977
BspLI GGNNCC 6 cut(s) 350, 351, 361, 568, 675, 1071
BspPI GGATC 5 cut(s) 668, 681, 873, 948, 1082
BspTNI GGTCTC 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 369, 398, 558
BssMI GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
BssNI GRCGYC 1 cut(s) 740
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 322, 639
Bst4CI ACNGT 2 cut(s) 151, 593
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 740
BstAPI GCANNNNNTGC 1 cut(s) 841
BstBAI YACGTR 1 cut(s) 1065
BstDEI CTNAG 2 cut(s) 41, 437
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 4 cut(s) 159, 223, 309, 1018
BstFNI CGCG 8 cut(s) 469, 471, 585, 721, 767, 827, 855, 977
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 4 cut(s) 286, 471, 721, 855
BstKTI GATC 6 cut(s) 676, 868, 933, 943, 1090, 1101
BstMAI GTCTC 3 cut(s) 157, 523, 530
BstMBI GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
BstMCI CGRYCG 1 cut(s) 499
BstMWI GCNNNNNNNGC 3 cut(s) 419, 841, 850
BstNI CCWGG 2 cut(s) 322, 639
BstSCI CCNGG 4 cut(s) 213, 320, 637, 1135
BstUI CGCG 8 cut(s) 469, 471, 585, 721, 767, 827, 855, 977
BstV1I GCAGC 1 cut(s) 607
BstX2I RGATCY 2 cut(s) 673, 940
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 2 cut(s) 673, 940
BstZI CGGCCG 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 398
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 4 cut(s) 159, 223, 309, 1018
BtsI GCAGTG 2 cut(s) 501, 545
BtsIMutI CAGTG 3 cut(s) 434, 501, 545
BtuMI TCGCGA 1 cut(s) 767
CfoI GCGC 4 cut(s) 286, 471, 721, 855
Cfr13I GGNCC 5 cut(s) 349, 405, 1117, 1133, 1153
CseI GACGC 3 cut(s) 14, 488, 748
Csp6I GTAC 6 cut(s) 25, 310, 388, 823, 973, 1030
CviQI GTAC 6 cut(s) 25, 310, 388, 823, 973, 1030
DdeI CTNAG 2 cut(s) 41, 437
DpnI GATC 6 cut(s) 675, 867, 932, 942, 1089, 1100
DpnII GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
EaeI YGGCCR 3 cut(s) 331, 496, 555
EagI CGGCCG 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EciI GGCGGA 5 cut(s) 145, 398, 715, 915, 998
EclXI CGGCCG 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 969
Eco31I GGTCTC 1 cut(s) 530
Eco47I GGWCC 2 cut(s) 349, 405
Eco47III AGCGCT 1 cut(s) 285
Eco52I CGGCCG 1 cut(s) 496
Eco72I CACGTG 1 cut(s) 1065
Eco88I CYCGRG 3 cut(s) 520, 527, 968
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 320, 637
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 969
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 2 cut(s) 157, 523
FaiI YATR 8 cut(s) 146, 198, 449, 512, 615, 617, 630, 1052
FaqI GGGAC 3 cut(s) 335, 506, 612
FauI CCCGC 3 cut(s) 714, 848, 955
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 1098
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 6 cut(s) 295, 411, 453, 499, 621, 743
FokI GGATG 4 cut(s) 146, 230, 316, 1025
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 6 cut(s) 295, 411, 453, 499, 621, 743
FspBI CTAG 1 cut(s) 803
GlaI GCGC 4 cut(s) 285, 470, 720, 854
GluI GCNGC 6 cut(s) 295, 411, 453, 499, 621, 743
GsaI CCCAGC 1 cut(s) 668
GsuI CTGGAG 2 cut(s) 866, 1046
HaeII RGCGCY 1 cut(s) 287
HapII CCGG 6 cut(s) 36, 215, 230, 564, 1073, 1136
HgaI GACGC 3 cut(s) 14, 488, 748
HhaI GCGC 4 cut(s) 286, 471, 721, 855
Hin1I GRCGYC 1 cut(s) 740
Hin6I GCGC 4 cut(s) 284, 469, 719, 853
HinP1I GCGC 4 cut(s) 284, 469, 719, 853
HincII GTYRAC 3 cut(s) 19, 478, 919
HindII GTYRAC 3 cut(s) 19, 478, 919
HinfI GANTC 5 cut(s) 45, 245, 428, 439, 464
HpaII CCGG 6 cut(s) 36, 215, 230, 564, 1073, 1136
HphI GGTGA 2 cut(s) 52, 1048
Hpy166II GTNNAC 5 cut(s) 19, 262, 405, 478, 919
Hpy188I TCNGA 3 cut(s) 44, 275, 535
Hpy188III TCNNGA 3 cut(s) 677, 766, 1091
Hpy8I GTNNAC 5 cut(s) 19, 262, 405, 478, 919
Hpy99I CGWCG 4 cut(s) 245, 358, 476, 742
HpyAV CCTTC 5 cut(s) 88, 103, 886, 980, 1010
HpyCH4III ACNGT 2 cut(s) 151, 593
HpyCH4IV ACGT 4 cut(s) 375, 474, 1064, 1083
HpyCH4V TGCA 3 cut(s) 307, 760, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 841, 850
HpyF3I CTNAG 2 cut(s) 41, 437
HpySE526I ACGT 4 cut(s) 375, 474, 1064, 1083
Hsp92I GRCGYC 1 cut(s) 740
HspAI GCGC 4 cut(s) 284, 469, 719, 853
KflI GGGWCCC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 1098
Kzo9I GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
LmnI GCTCC 6 cut(s) 216, 535, 566, 661, 799, 1069
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 3 cut(s) 208, 294, 747
MaeI CTAG 1 cut(s) 803
MaeII ACGT 4 cut(s) 375, 474, 1064, 1083
MaeIII GTNAC 1 cut(s) 609
MalI GATC 6 cut(s) 675, 867, 932, 942, 1089, 1100
MbiI CCGCTC 1 cut(s) 211
MboI GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
MboII GAAGA 2 cut(s) 4, 245
MfeI CAATTG 1 cut(s) 1157
MflI RGATCY 2 cut(s) 673, 940
MhlI GDGCHC 1 cut(s) 969
MluCI AATT 4 cut(s) 315, 650, 1123, 1157
MlyI GAGTC 4 cut(s) 39, 254, 448, 458
MmeI TCCRAC 3 cut(s) 513, 690, 762
MseI TTAA 2 cut(s) 105, 314
MspI CCGG 6 cut(s) 36, 215, 230, 564, 1073, 1136
MspR9I CCNGG 4 cut(s) 215, 322, 639, 1137
MunI CAATTG 1 cut(s) 1157
MvaI CCWGG 2 cut(s) 322, 639
MvnI CGCG 8 cut(s) 469, 471, 585, 721, 767, 827, 855, 977
MwoI GCNNNNNNNGC 3 cut(s) 419, 841, 850
NciI CCSGG 2 cut(s) 215, 1137
NdeI CATATG 1 cut(s) 615
NdeII GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
NlaIV GGNNCC 6 cut(s) 350, 351, 361, 568, 675, 1071
NmeAIII GCCGAG 2 cut(s) 481, 583
NruI TCGCGA 1 cut(s) 767
PaeR7I CTCGAG 1 cut(s) 968
PcsI WCGNNNNNNNCGW 3 cut(s) 12, 350, 468
PfeI GAWTC 1 cut(s) 428
PfoI TCCNGGA 2 cut(s) 213, 320
PkrI GCNGC 6 cut(s) 296, 412, 454, 500, 622, 744
PleI GAGTC 4 cut(s) 39, 253, 447, 458
PmaCI CACGTG 1 cut(s) 1065
PmlI CACGTG 1 cut(s) 1065
PpsI GAGTC 4 cut(s) 39, 253, 447, 458
Ppu21I YACGTR 1 cut(s) 1065
PpuMI RGGWCCY 1 cut(s) 349
Psp1406I AACGTT 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 320, 637
PspCI CACGTG 1 cut(s) 1065
PspFI CCCAGC 1 cut(s) 664
PspGI CCWGG 2 cut(s) 320, 637
PspN4I GGNNCC 6 cut(s) 350, 351, 361, 568, 675, 1071
PspPI GGNCC 5 cut(s) 349, 405, 1117, 1133, 1153
PspPPI RGGWCCY 1 cut(s) 349
PspXI VCTCGAGB 1 cut(s) 968
PsuI RGATCY 2 cut(s) 673, 940
RruI TCGCGA 1 cut(s) 767
RsaI GTAC 6 cut(s) 26, 311, 389, 824, 974, 1031
RsaNI GTAC 6 cut(s) 25, 310, 388, 823, 973, 1030
SaqAI TTAA 2 cut(s) 105, 314
SatI GCNGC 6 cut(s) 295, 411, 453, 499, 621, 743
Sau3AI GATC 6 cut(s) 673, 865, 930, 940, 1087, 1098
Sau96I GGNCC 5 cut(s) 349, 405, 1117, 1133, 1153
ScaI AGTACT 3 cut(s) 26, 311, 1031
SchI GAGTC 4 cut(s) 39, 254, 448, 458
ScrFI CCNGG 4 cut(s) 215, 322, 639, 1137
SduI GDGCHC 1 cut(s) 969
SfaNI GCATC 3 cut(s) 208, 294, 747
Sfr274I CTCGAG 1 cut(s) 968
SinI GGWCC 2 cut(s) 349, 405
SlaI CTCGAG 1 cut(s) 968
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
Sse9I AATT 4 cut(s) 315, 650, 1123, 1157
SspI AATATT 1 cut(s) 816
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 4 cut(s) 213, 320, 637, 1135
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 151, 593
TaiI ACGT 4 cut(s) 378, 477, 1067, 1086
TaqI TCGA 3 cut(s) 189, 819, 969
TasI AATT 4 cut(s) 315, 650, 1123, 1157
TatI WGTACW 3 cut(s) 24, 309, 1029
TauI GCSGC 5 cut(s) 297, 413, 455, 501, 745
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 105, 314
Tru9I TTAA 2 cut(s) 105, 314
TscAI CASTG 3 cut(s) 441, 508, 545
TseI GCWGC 1 cut(s) 620
TspDTI ATGAA 2 cut(s) 240, 1029
TspGWI ACGGA 4 cut(s) 267, 623, 887, 1061
TspRI CASTG 3 cut(s) 441, 508, 545
VpaK11BI GGWCC 2 cut(s) 349, 405
XapI RAATTY 1 cut(s) 1123
XcmI CCANNNNNNNNNTGG 2 cut(s) 376, 1127
XhoI CTCGAG 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 1 cut(s) 803
ZrmI AGTACT 3 cut(s) 26, 311, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.