Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016582

Physical Location & Seq

Genomic Coordinates Forward (+)

17421168 .. 17422395

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0125400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCACAGGAGAATGGTGGAATAACGATGTTGAAGAGGTTGTTAAACAAGGGAATAGACTTGTATATATTGCCTCCGAATATGTCAGATGCACATACCATTAATGGGAAGCCAGGGCCGCTCTTTCCATGTTCTGAAAAACATACCTTTGTAATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATAGTCAATGCTGAACTATTCTTTGCAATTGCTGGCCACAACTTGACAGTACCTGGTAGAGTAGAGTTAGTGCTACAAGACACTAATCTTCTCACAGTGGAATCCTATCCAATCCACCTTCATGGTTACAATTTTTTCATTGTTGAGACCGGAGTCGGTAACATTGACCCCAAGAAGGACCCGGCTAAATTTAACTTGGTGGATCCTCCTGAAAGAAACACCGTGGAGTTCCCACCGGTGGTTGGGCTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019904 GO:0022607 GO:0030674 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051291 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0060090 GO:0065002 GO:0065003 GO:0070206 GO:0070208 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:0097718

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 Chromo

Protein Analysis

147

Amino Acids

16.31

Weight (kDa)

5.68

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	21 - 80	5.4e-12	Multicopper oxidase
Cu-oxidase_2	PF07731	82 - 142	1.6e-13	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47450
fragaria_vesca	FvH4_2g16010
malus_domestica	MD05G1128900.v1.1
prunus_persica	Prupe.8G173000_v2.0.a1
pyrus_communis	pycom05g12490
rosa_chinensis	RchiOBHm_Chr6g0279541
rosa_laevigata	RLG00000013137
rosa_roxburghii	Rroxscaffold_7G00188820
rosa_rugosa	Rorug06G0125400
rosa_samantha	Rh6AG234400 Rh6BG238800 Rh6CG240800 Rh6DG232300
rosa_wichuraiana	Rw6G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	386, 399
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	4 cut(s)	105, 364, 427, 431
AgeI	ACCGGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	34, 164
AjnI	CCWGG	2 cut(s)	112, 241
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	386, 399
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	116, 223
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	377
AseI	ATTAAT	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	116, 367
AsuC2I	CCSGG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	423
BciT130I	CCWGG	2 cut(s)	114, 243
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	189
BisI	GCNGC	2 cut(s)	119, 437
BlsI	GCNGC	2 cut(s)	120, 438
Bme1390I	CCNGG	3 cut(s)	114, 243, 371
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	116, 367
BmiI	GGNNCC	2 cut(s)	369, 393
BmrFI	CCNGG	3 cut(s)	114, 243, 371
BmsI	GCATC	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	113, 411
BsaWI	WCCGGW	2 cut(s)	338, 424
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 364, 427, 431
Bse118I	RCCGGY	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	114, 243
BseDI	CCNNGG	2 cut(s)	113, 411
BseLI	CCNNNNNNNGG	4 cut(s)	105, 364, 427, 431
BseXI	GCAGC	1 cut(s)	423
BshFI	GGCC	2 cut(s)	118, 225
BshTI	ACCGGT	1 cut(s)	424
BsiSI	CCGG	3 cut(s)	339, 371, 425
BslI	CCNNNNNNNGG	4 cut(s)	105, 364, 427, 431
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	118, 225
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	118, 225
BspLI	GGNNCC	2 cut(s)	369, 393
BspMI	ACCTGC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	386, 399
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	113, 411
BssMI	GATC	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	114, 243
Bst4CI	ACNGT	3 cut(s)	238, 286, 412
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	223
BstDSI	CCRYGG	1 cut(s)	411
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	114, 243
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	112, 241, 369
BstV1I	GCAGC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	118, 225
BtgI	CCRYGG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	116, 367
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	424
CviAII	CATG	2 cut(s)	129, 311
CviJI	RGCY	5 cut(s)	112, 118, 225, 374, 436
CviKI_1	RGCY	5 cut(s)	112, 118, 225, 374, 436
CviQI	GTAC	1 cut(s)	239
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	112, 241
FaeI	CATG	2 cut(s)	132, 314
FaiI	YATR	8 cut(s)	66, 68, 83, 96, 130, 144, 312, 442
FatI	CATG	2 cut(s)	128, 310
Fnu4HI	GCNGC	2 cut(s)	119, 437
Fsp4HI	GCNGC	2 cut(s)	119, 437
GluI	GCNGC	2 cut(s)	119, 437
HaeIII	GGCC	2 cut(s)	118, 225
HapII	CCGG	3 cut(s)	339, 371, 425
Hin1II	CATG	2 cut(s)	132, 314
HinfI	GANTC	2 cut(s)	290, 342
HpaII	CCGG	3 cut(s)	339, 371, 425
Hpy188I	TCNGA	3 cut(s)	78, 88, 136
Hpy188III	TCNNGA	1 cut(s)	398
HpyAV	CCTTC	2 cut(s)	317, 358
HpyCH4III	ACNGT	3 cut(s)	238, 286, 412
HpyCH4V	TGCA	2 cut(s)	92, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	132, 314
Kzo9I	GATC	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	241
MaeIII	GTNAC	2 cut(s)	314, 347
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	1 cut(s)	391
MboII	GAAGA	2 cut(s)	46, 269
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	3 cut(s)	216, 319, 377
MluNI	TGGCCA	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	30, 84, 151, 405
Mox20I	TGGCCA	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	3 cut(s)	44, 102, 381
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	225
MspI	CCGG	3 cut(s)	339, 371, 425
MspR9I	CCNGG	3 cut(s)	114, 243, 371
MunI	CAATTG	1 cut(s)	216
MvaI	CCWGG	2 cut(s)	114, 243
MwoI	GCNNNNNNNGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	132, 314
NlaIV	GGNNCC	2 cut(s)	369, 393
PfeI	GAWTC	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	120, 438
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	367
PshAI	GACNNNNGTC	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	112, 241
PspGI	CCWGG	2 cut(s)	112, 241
PspN4I	GGNNCC	2 cut(s)	369, 393
PspPI	GGNCC	2 cut(s)	116, 367
PspPPI	RGGWCCY	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	44, 102, 381
SatI	GCNGC	2 cut(s)	119, 437
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	116, 367
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	3 cut(s)	114, 243, 371
SetI	ASST	6 cut(s)	41, 149, 162, 183, 244, 309
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	79
SgrAI	CRCCGGYG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	3 cut(s)	216, 319, 377
SsiI	CCGC	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	112, 241, 369
TaaI	ACNGT	3 cut(s)	238, 286, 412
TasI	AATT	3 cut(s)	216, 319, 377
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	44, 102, 381
Tru9I	TTAA	3 cut(s)	44, 102, 381
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	299, 316
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.