AT3G07140

GPI transamidase component

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2261104 .. 2264064
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07140.2

Sequence Viewer

Length: 1935 bp
ATGGCTAGTCTTCTTCGATCCTTAATCCTTTTGCTAATCGTGCAATCATTTTTGGTTGCGATCGCTTTCGGGTCGAAAGAAGTTGAAGAATTCAGCGAGGCATTGCTCTTGAAGCCTTTACCTGATCGAAAAGTTTTAGCTCACTTCCACTTCGAGAACCGAGCTCCTCCGTCAAACTCCCATGGCCGCCATCACCATCTCTTCCCGAAAGCTATTTCTCAGTTGGTTCAGAAGTTTCGGGTCAAGGAGATGGAGTTATCTTTTACTCAGGGTCGATGGAACCATGAACATTGGGGAGGATTTGACCCTCTATCAAGTATGAATGCGAAGCCTGTTGGTGTGGAGCTGTGGGCTGTGTTTGATGTTCCTCAGTCTCAGGTTGATACTTCTTGGAAGAACTTAACTCATGCACTGTCAGGGCTTTTCTGTGCTTCCATCAATTTTCTAGAATCTTCCACTTCATATGCTGCTCCTACATGGGGATTTGGACCCAATTCTGACAAGCTGAGGTATGGTTCACTGCCACGTGAAGCTGTTTGTACTGAGAACTTGACCCCATGGCTAAAGTTACTTCCTTGTAGAGATAAGGATGGTATTTCTGCGTTAATGAATAGGCCATCTGTTTACAGAGGGTTTTATCATTCTCAGAGATTGCATTTATCCACGGTTGAATCTGGTCAAGAGGGATTGGGTTCTGGTATAGTGCTGGAGCAGACGCTTACTGTTGTTCTTCAGCCTGAGACTACTTCTGTTGAATCAAATATGCAGCCAAGTTGGTCCCTCAGCTCCCTCTTTGGGAGACAAGTTGTTGGGAGATGTGTTCTTGCAAAGTCAAGTAATGTGTATCTTCAATTGGAAGGTCTTCTTGGTTACGAATCAAAAAACGTGGATACAGAAATAGAAGCACACCAACTATGGAAGAATGCAGAGTTTGAATTGTCTCTTAAGCCAGAGAGGGTTATTCGAGAAAGCTGCAGCTTTCTTTTTATTTTTGATATTGACAAATCAAGTGACAGCGAGCCATTTGATCTTGGCCTTACTTGGAAGCGTCCCTCAAAGTGGTCATGTCAACAAGCTCCATTACACTCGAGTCGGTTTTTGATGGGAAGCGGGAACGAAAGAGGTGCAATAGCCATCTTGTTAAAAGCGACAGAATCTCAGGAGAAGTTATCAGGCAGAGATCTCACTAATGGCCAATGTACAATAAAAGCAAATATCTTCCAGATTTTCCCATGGTATATTAAGGTTTATTATCATACTCTACAAATCTTTGTGGATCAACAACAGAAGACAGACAGTGAGGTCTTAAAGAAGATCAATGTCTCACCATCTACGGATAAGGTGTCATCTGGCATGATGGAGATGATGTTGGAACTACCATGTGAAGTGAAATCTGTAGCCATATCAATTGAATATGATAAGGGTTTTCTGCATATAGATGAATATCCTCCTGATGCTAATCAAGGATTCGACATTCCATCGGCTTTGATAAGCTTCCCCGATCATCATGCTAGTTTAGATTTCCAAGAAGAGCTCAGCAACTCGCCCTTATTATCAAGTTTAAAGGAAAAATCCTTAGTACGCTCTTACACAGAAGTATTGCTCGTACCTTTGACAACCCCTGATTTTAGCATGCCTTACAACGTAATCACGATCACATGCACCATCTTCGCATTGTATTTTGGATCATTGCTAAATGTTCTACGTAGACGAATTGGTGAAGAAGAAAGGTTTCTCAAAAGCCAAGCAGGAAAGAAAACAGGTGGGCTTAAGCAGTTATTATCGAGAATCACAGCCAAGATTAGAGGGAGACCAATTGAAGCACCATCATCATCAGAAGCTGAATCTTCGGTCTTGTCTAGTAAACTTATCTTAAAAATCATATTAGTTGCAGGAGCTGCTGCAGCGTGGCAATATTTTTCCACGGACGAGTAG

Protein Analysis

644

Amino Acids

72.17

Weight (kDa)

6.41

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gpi16 PF04113 17 - 592 6.7e-169 Gpi16 subunit, GPI transamidase component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1301
AccI GTMKAC 1 cut(s) 1708
AciI CCGC 2 cut(s) 187, 1110
AclWI GGATC 3 cut(s) 12, 1284, 1693
AcoI YGGCCR 2 cut(s) 184, 1192
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 716
AcvI CACGTG 1 cut(s) 527
AfaI GTAC 4 cut(s) 541, 1201, 1581, 1608
AfiI CCNNNNNNNGG 3 cut(s) 479, 795, 1059
AflII CTTAAG 2 cut(s) 944, 1769
AgsI TTSAA 8 cut(s) 86, 112, 671, 755, 851, 935, 1412, 1820
AjuI GAANNNNNNNTTGG 2 cut(s) 849, 881
Alw21I GWGCWC 2 cut(s) 166, 1536
Alw26I GTCTC 6 cut(s) 378, 734, 793, 945, 1327, 1804
AlwI GGATC 3 cut(s) 12, 1284, 1693
AlwNI CAGNNNCTG 2 cut(s) 1841, 1898
Ama87I CYCGRG 1 cut(s) 1087
AoxI GGCC 4 cut(s) 184, 614, 1033, 1192
ApeKI GCWGC 7 cut(s) 467, 766, 972, 975, 1898, 1901, 1904
ApoI RAATTY 1 cut(s) 89
AsiSI GCGATCGC 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 861, 1731
AspS9I GGNCC 2 cut(s) 488, 777
AsuHPI GGTGA 3 cut(s) 185, 1317, 1730
AvaI CYCGRG 1 cut(s) 1087
AvaII GGWCC 2 cut(s) 488, 777
BalI TGGCCA 1 cut(s) 1194
BanII GRGCYC 2 cut(s) 166, 1536
BbrPI CACGTG 1 cut(s) 527
BbsI GAAGAC 3 cut(s) 2, 854, 1295
Bbv12I GWGCWC 2 cut(s) 166, 1536
BbvCI CCTCAGC 2 cut(s) 506, 782
BbvI GCAGC 7 cut(s) 454, 778, 959, 987, 1885, 1888, 1916
BcgI CGANNNNNNTGC 8 cut(s) 954, 988, 1106, 1140, 1490, 1524, 1651, 1685
BciVI GTATCC 1 cut(s) 883
BcoDI GTCTC 6 cut(s) 378, 734, 793, 945, 1327, 1804
BfaI CTAG 4 cut(s) 6, 446, 1512, 1860
BfmI CTRYAG 3 cut(s) 973, 1395, 1902
BfrI CTTAAG 2 cut(s) 944, 1769
BfuI GTATCC 1 cut(s) 883
BglII AGATCT 1 cut(s) 1180
BisI GCNGC 8 cut(s) 187, 468, 767, 973, 976, 1899, 1902, 1905
BlpI GCTNAGC 1 cut(s) 1535
BlsI GCNGC 8 cut(s) 188, 469, 768, 974, 977, 1900, 1903, 1906
Bme18I GGWCC 2 cut(s) 488, 777
BmeT110I CYCGRG 1 cut(s) 1087
BmgT120I GGNCC 2 cut(s) 488, 777
BmiI GGNNCC 3 cut(s) 281, 490, 779
BmsI GCATC 1 cut(s) 1444
BpiI GAAGAC 3 cut(s) 2, 854, 1295
BpmI CTGGAG 1 cut(s) 728
Bpu10I CCTNAGC 2 cut(s) 506, 782
Bpu1102I GCTNAGC 1 cut(s) 1535
BsaAI YACGTR 2 cut(s) 527, 1706
BsaBI GATNNNNATC 2 cut(s) 1443, 1458
BsaI GGTCTC 1 cut(s) 1804
BsaJI CCNNGG 5 cut(s) 181, 557, 663, 1232, 1923
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 1352, 1382
Bsc4I CCNNNNNNNGG 3 cut(s) 479, 795, 1059
Bse3DI GCAATG 2 cut(s) 101, 1688
Bse8I GATNNNNATC 2 cut(s) 1443, 1458
BseDI CCNNGG 5 cut(s) 181, 557, 663, 1232, 1923
BseGI GGATG 1 cut(s) 595
BseJI GATNNNNATC 2 cut(s) 1443, 1458
BseLI CCNNNNNNNGG 3 cut(s) 479, 795, 1059
BseMI GCAATG 2 cut(s) 101, 1688
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 7 cut(s) 454, 778, 959, 987, 1885, 1888, 1916
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 4 cut(s) 186, 616, 1035, 1194
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 166, 1536
BsiHKCI CYCGRG 1 cut(s) 1087
BslFI GGGAC 2 cut(s) 763, 1035
BslI CCNNNNNNNGG 3 cut(s) 479, 795, 1059
BsmAI GTCTC 6 cut(s) 378, 734, 793, 945, 1327, 1804
BsmFI GGGAC 2 cut(s) 763, 1035
BsmI GAATGC 2 cut(s) 328, 928
BsnI GGCC 4 cut(s) 186, 616, 1035, 1194
Bso31I GGTCTC 1 cut(s) 1804
BsoBI CYCGRG 1 cut(s) 1087
Bsp1286I GDGCHC 2 cut(s) 166, 1536
Bsp1407I TGTACA 1 cut(s) 1199
Bsp1720I GCTNAGC 1 cut(s) 1535
Bsp19I CCATGG 3 cut(s) 181, 557, 1232
BspACI CCGC 2 cut(s) 187, 1110
BspANI GGCC 4 cut(s) 186, 616, 1035, 1194
BspLI GGNNCC 3 cut(s) 281, 490, 779
BspMAI CTGCAG 2 cut(s) 977, 1906
BspPI GGATC 3 cut(s) 12, 1284, 1693
BspQI GCTCTTC 1 cut(s) 1524
BspTI CTTAAG 2 cut(s) 944, 1769
BspTNI GGTCTC 1 cut(s) 1804
BsrDI GCAATG 2 cut(s) 101, 1688
BsrGI TGTACA 1 cut(s) 1199
BssECI CCNNGG 5 cut(s) 181, 557, 663, 1232, 1923
BssT1I CCWWGG 3 cut(s) 181, 557, 1232
Bst4CI ACNGT 4 cut(s) 414, 667, 724, 1298
Bst6I CTCTTC 2 cut(s) 206, 1524
BstAFI CTTAAG 2 cut(s) 944, 1769
BstAPI GCANNNNNTGC 1 cut(s) 1898
BstAUI TGTACA 1 cut(s) 1199
BstBAI YACGTR 2 cut(s) 527, 1706
BstC8I GCNNGC 2 cut(s) 1019, 1634
BstDSI CCRYGG 5 cut(s) 181, 557, 663, 1232, 1923
BstF5I GGATG 1 cut(s) 595
BstMAI GTCTC 6 cut(s) 378, 734, 793, 945, 1327, 1804
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 4 cut(s) 40, 112, 1898, 1904
BstNSI RCATGY 2 cut(s) 1636, 1662
BstSFI CTRYAG 3 cut(s) 973, 1395, 1902
BstSNI TACGTA 1 cut(s) 1706
BstV1I GCAGC 7 cut(s) 454, 778, 959, 987, 1885, 1888, 1916
BstV2I GAAGAC 3 cut(s) 2, 854, 1295
BstX2I RGATCY 1 cut(s) 1180
BstYI RGATCY 1 cut(s) 1180
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 4 cut(s) 186, 616, 1035, 1194
BtgI CCRYGG 5 cut(s) 181, 557, 663, 1232, 1923
BtsCI GGATG 1 cut(s) 595
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 3 cut(s) 410, 518, 1303
Cac8I GCNNGC 2 cut(s) 1019, 1634
CaiI CAGNNNCTG 2 cut(s) 1841, 1898
Cfr13I GGNCC 2 cut(s) 488, 777
CseI GACGC 2 cut(s) 724, 1037
Csp6I GTAC 4 cut(s) 540, 1200, 1580, 1607
CspCI CAANNNNNGTGG 2 cut(s) 867, 902
CviQI GTAC 4 cut(s) 540, 1200, 1580, 1607
DraI TTTAAA 1 cut(s) 1563
DrdI GACNNNNNNGTC 1 cut(s) 1301
DseDI GACNNNNNNGTC 1 cut(s) 1301
EaeI YGGCCR 2 cut(s) 184, 1192
Eam1104I CTCTTC 2 cut(s) 206, 1524
EarI CTCTTC 2 cut(s) 206, 1524
Ecl136II GAGCTC 2 cut(s) 164, 1534
Eco105I TACGTA 1 cut(s) 1706
Eco130I CCWWGG 3 cut(s) 181, 557, 1232
Eco24I GRGCYC 2 cut(s) 166, 1536
Eco31I GGTCTC 1 cut(s) 1804
Eco47I GGWCC 2 cut(s) 488, 777
Eco53kI GAGCTC 2 cut(s) 164, 1534
Eco57I CTGAAG 1 cut(s) 716
Eco72I CACGTG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 1087
EcoICRI GAGCTC 2 cut(s) 164, 1534
EcoRI GAATTC 1 cut(s) 89
EcoT14I CCWWGG 3 cut(s) 181, 557, 1232
EcoT38I GRGCYC 2 cut(s) 166, 1536
ErhI CCWWGG 3 cut(s) 181, 557, 1232
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 2 cut(s) 763, 1035
FauI CCCGC 1 cut(s) 1103
FauNDI CATATG 1 cut(s) 463
FblI GTMKAC 1 cut(s) 1708
Fnu4HI GCNGC 8 cut(s) 187, 468, 767, 973, 976, 1899, 1902, 1905
FokI GGATG 1 cut(s) 602
FriOI GRGCYC 2 cut(s) 166, 1536
Fsp4HI GCNGC 8 cut(s) 187, 468, 767, 973, 976, 1899, 1902, 1905
FspBI CTAG 4 cut(s) 6, 446, 1512, 1860
GluI GCNGC 8 cut(s) 187, 468, 767, 973, 976, 1899, 1902, 1905
GsuI CTGGAG 1 cut(s) 728
HaeIII GGCC 4 cut(s) 186, 616, 1035, 1194
HgaI GACGC 2 cut(s) 724, 1037
HincII GTYRAC 1 cut(s) 1070
HindII GTYRAC 1 cut(s) 1070
HindIII AAGCTT 1 cut(s) 1492
HinfI GANTC 9 cut(s) 449, 671, 755, 875, 1090, 1154, 1467, 1788, 1844
HphI GGTGA 3 cut(s) 185, 1317, 1730
Hpy166II GTNNAC 5 cut(s) 518, 625, 1070, 1709, 1865
Hpy188I TCNGA 4 cut(s) 231, 499, 648, 1837
Hpy8I GTNNAC 5 cut(s) 518, 625, 1070, 1709, 1865
HpyAV CCTTC 1 cut(s) 851
HpyCH4III ACNGT 4 cut(s) 414, 667, 724, 1298
HpyCH4IV ACGT 4 cut(s) 526, 885, 1644, 1705
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 112, 1898, 1904
HpySE526I ACGT 4 cut(s) 526, 885, 1644, 1705
LguI GCTCTTC 1 cut(s) 1524
LmnI GCTCC 7 cut(s) 169, 343, 475, 709, 791, 1081, 1895
Lsp1109I GCAGC 7 cut(s) 454, 778, 959, 987, 1885, 1888, 1916
LweI GCATC 1 cut(s) 1444
MaeI CTAG 4 cut(s) 6, 446, 1512, 1860
MaeII ACGT 4 cut(s) 526, 885, 1644, 1705
MaeIII GTNAC 3 cut(s) 567, 869, 1010
MfeI CAATTG 3 cut(s) 851, 1407, 1815
MflI RGATCY 1 cut(s) 1180
MhlI GDGCHC 2 cut(s) 166, 1536
MlsI TGGCCA 1 cut(s) 1194
MluCI AATT 8 cut(s) 89, 439, 493, 851, 935, 1407, 1713, 1815
MluNI TGGCCA 1 cut(s) 1194
MlyI GAGTC 1 cut(s) 1099
MmeI TCCRAC 1 cut(s) 1350
Mox20I TGGCCA 1 cut(s) 1194
MroXI GAANNNNTTC 2 cut(s) 861, 1731
MscI TGGCCA 1 cut(s) 1194
MslI CAYNNNNRTG 1 cut(s) 1437
Msp20I TGGCCA 1 cut(s) 1194
MspCI CTTAAG 2 cut(s) 944, 1769
MunI CAATTG 3 cut(s) 851, 1407, 1815
Mva1269I GAATGC 2 cut(s) 328, 928
MwoI GCNNNNNNNGC 4 cut(s) 40, 112, 1898, 1904
NcoI CCATGG 3 cut(s) 181, 557, 1232
NdeI CATATG 1 cut(s) 463
NlaIV GGNNCC 3 cut(s) 281, 490, 779
NmuCI GTSAC 1 cut(s) 1010
NspI RCATGY 2 cut(s) 1636, 1662
PaeI GCATGC 1 cut(s) 1636
PaeR7I CTCGAG 1 cut(s) 1087
PciSI GCTCTTC 1 cut(s) 1524
PctI GAATGC 2 cut(s) 328, 928
PdmI GAANNNNTTC 2 cut(s) 861, 1731
PfeI GAWTC 8 cut(s) 449, 671, 755, 875, 1154, 1467, 1788, 1844
PkrI GCNGC 8 cut(s) 188, 469, 768, 974, 977, 1900, 1903, 1906
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 1 cut(s) 1098
PmaCI CACGTG 1 cut(s) 527
PmlI CACGTG 1 cut(s) 527
PpsI GAGTC 1 cut(s) 1098
Ppu21I YACGTR 2 cut(s) 527, 1706
Psp124BI GAGCTC 2 cut(s) 166, 1536
PspCI CACGTG 1 cut(s) 527
PspN4I GGNNCC 3 cut(s) 281, 490, 779
PspPI GGNCC 2 cut(s) 488, 777
PspXI VCTCGAGB 1 cut(s) 1087
PstI CTGCAG 2 cut(s) 977, 1906
PstNI CAGNNNCTG 2 cut(s) 1841, 1898
PsuI RGATCY 1 cut(s) 1180
PvuI CGATCG 1 cut(s) 63
RgaI GCGATCGC 1 cut(s) 63
RsaI GTAC 4 cut(s) 541, 1201, 1581, 1608
RsaNI GTAC 4 cut(s) 540, 1200, 1580, 1607
RseI CAYNNNNRTG 1 cut(s) 1437
SacI GAGCTC 2 cut(s) 166, 1536
SapI GCTCTTC 1 cut(s) 1524
SatI GCNGC 8 cut(s) 187, 468, 767, 973, 976, 1899, 1902, 1905
Sau96I GGNCC 2 cut(s) 488, 777
SchI GAGTC 1 cut(s) 1099
SduI GDGCHC 2 cut(s) 166, 1536
SfaAI GCGATCGC 1 cut(s) 63
SfaNI GCATC 1 cut(s) 1444
SfcI CTRYAG 3 cut(s) 973, 1395, 1902
Sfr274I CTCGAG 1 cut(s) 1087
SgfI GCGATCGC 1 cut(s) 63
SinI GGWCC 2 cut(s) 488, 777
SlaI CTCGAG 1 cut(s) 1087
SmiMI CAYNNNNRTG 1 cut(s) 1437
SmlI CTYRAG 3 cut(s) 944, 1087, 1769
SmoI CTYRAG 3 cut(s) 944, 1087, 1769
SnaBI TACGTA 1 cut(s) 1706
SphI GCATGC 1 cut(s) 1636
Sse9I AATT 8 cut(s) 89, 439, 493, 851, 935, 1407, 1713, 1815
SsiI CCGC 2 cut(s) 187, 1110
SspI AATATT 1 cut(s) 1916
SspMI CTAG 4 cut(s) 6, 446, 1512, 1860
SstI GAGCTC 2 cut(s) 166, 1536
StyI CCWWGG 3 cut(s) 181, 557, 1232
TaaI ACNGT 4 cut(s) 414, 667, 724, 1298
TaiI ACGT 4 cut(s) 529, 888, 1647, 1708
TaqI TCGA 9 cut(s) 16, 74, 127, 153, 274, 964, 1088, 1470, 1784
TaqII GACCGA 1 cut(s) 1840
TasI AATT 8 cut(s) 89, 439, 493, 851, 935, 1407, 1713, 1815
TatI WGTACW 2 cut(s) 539, 1199
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 8 cut(s) 449, 671, 755, 875, 1154, 1467, 1788, 1844
TscAI CASTG 3 cut(s) 417, 525, 1303
TseFI GTSAC 1 cut(s) 1010
TseI GCWGC 7 cut(s) 467, 766, 972, 975, 1898, 1901, 1904
Tsp45I GTSAC 1 cut(s) 1010
TspDTI ATGAA 5 cut(s) 300, 335, 450, 623, 1455
TspGWI ACGGA 2 cut(s) 159, 1349
TspRI CASTG 3 cut(s) 417, 525, 1303
Vha464I CTTAAG 2 cut(s) 944, 1769
VpaK11BI GGWCC 2 cut(s) 488, 777
XapI RAATTY 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 2 cut(s) 1636, 1662
XhoI CTCGAG 1 cut(s) 1087
XmiI GTMKAC 1 cut(s) 1708
XmnI GAANNNNTTC 2 cut(s) 861, 1731
XspI CTAG 4 cut(s) 6, 446, 1512, 1860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.