MD16G1223000.v1.1

GPI transamidase component

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
22429274 .. 22431623
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1223000.v1.1.491

Sequence Viewer

Length: 1716 bp
ATGGAATTATCCTTTACTCAAGGCCGATGGAATTATGATCGCTGGGGTGCGTTTGATCCCGTAGCAAGCAACAATGCCAAGCCTCCTGGAGTGGAGTTGTGGGCTGTTTTTGATGTCCCTCATGAGCAGGTGGATGATTCTTGGAAGAATTTAACCCATGCTCTTTCGGGTCTCTTTTGTGCATCAATTAACTTCCTGGAATCGTCTACGACGTTTTCTGCCCCTGAATGGGGCTATCGCCCGGCGGCAGGCAGTCTGAGGTATGGTACATTGCCCCGTGAGGCTGTTTGTACTGAGAACCTAACTCCCTGGCTCAAGCTCCTTCCTTGTAGAGATAAAGCTGGGCTTTCTGTGTTAATGGATAGACCGTCTATATACAAAGGATTTTATCATTCACAGCAATTGCGCTTGGCCTCAAGTGAAATCGAATCAGAAGGTGTAGGCTTAGGAATTGTTCTTCAGCAAACACTCACAGTTGTTGTAGAACCCAATAGTCAGAGATCTGCTATAACTTATTCACACGAGACAAAATTACAACCAAGTTGGTCGTTGACTTCAATTTTTGGGAGGAAGGTCAGTGGAAGATGTGTGCTTGCCAAGTCTTCCATCATATACGTTCAGCTTGATAGGGGACTTGTTGCTCAACTGGATTATTTGCAGAAAGAAAATGAGATATCTGCCCCTGATGAATCTGTCTTTGAGTTTTCAGTCGAGCCAGACAATATCTTAAAAGAACTGAATGGTTTTGAAAAGAAGAGTCCATCTGTTTTATATGAATTTTCTATTGAGAAGTCCAGTGAGTCTAGGCCATTTGATTTAGGCCTAACTTGGAAGCGTCCTGTAGTTTGGTCTTGTCAGAAAGCACCGCTGCACGCTAGTAGGTTCTTGATGGGAAGTGGGAATGAAAGGGGTGCTATCGCAATATCCTTGAGATCTATGGAAGTGAGTGATCGGTTGCATACTGATACAAGTGAAGGCAGCTGCAAATTGGAAGTCAAAGTCTTCCAAGTTGTGCCTTGGTATATTAAGGTTTATTATCATACACTGCAAGTGTTTGTTGATGAACAACCTCAAGCAGTTTCAGATGTCGTTGAAAAGATGCGTGTTTCACCTTCTGTAGACAAGGTGTCACCTGGGGTGATGGAGATGGTCCTGAAATTCCCTTGTGGAATGAAATCAGCTGCTATAATCTCAGATTTTGATAAGGGCTTTTTGCATATTGATGAATATCCGCCAGATGCCAATCAAGGATTTGATATTCCATCAGCCATAATAAGCTTTCCCCACTTCCATACAAGCATACAATTTTTCAAAGATAAATCTGTGGATAAGTCGTCCATCTTATCTAGATTCCAGGAAAACAGCGCTGTTCTGGCATACACAGAAGTATTACTTGTACCCTTGACAACACCCGATTTTAGCATGCCTTACAATGTTATCACAATTACATGCACTATCTATGCTTTGTATTTTGGTGCTTTGCTCAATGTGCTTCGAAGGCGTGTTGGCATGGAGGAAAGACTTGCGAAGAGCAAAGATGCCAATAAACCTGGTCGGCCCCTTCAGCTGCGATCTAGGTTGTCTGCTAAGCTTAGAGGAAGACCATACCAGCCACCTCGTCAATCCAGCACTCCATCATCCTTCATCAGTCGAAAACTGATACTTGTTATCCTTGTGGCTGGGATTGGTGTCTATTGGCAAATTTATTTTGAATGA

Protein Analysis

572

Amino Acids

64.21

Weight (kDa)

7.58

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gpi16 PF04113 1 - 515 1.2e-141 Gpi16 subunit, GPI transamidase component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 118
AccI GTMKAC 2 cut(s) 206, 1119
AciI CCGC 3 cut(s) 245, 866, 1232
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 4 cut(s) 148, 776, 1157, 1701
AcuI CTGAAG 2 cut(s) 443, 1547
AfaI GTAC 3 cut(s) 268, 292, 1398
AfeI AGCGCT 1 cut(s) 1366
AfiI CCNNNNNNNGG 4 cut(s) 228, 229, 230, 248
AgsI TTSAA 5 cut(s) 558, 749, 1094, 1312, 1712
AhdI GACNNNNNGTC 1 cut(s) 1126
AjnI CCWGG 6 cut(s) 85, 195, 308, 1132, 1353, 1549
AluBI AGCT 8 cut(s) 319, 341, 622, 981, 1181, 1278, 1567, 1591
AluI AGCT 8 cut(s) 319, 341, 622, 981, 1181, 1278, 1567, 1591
Alw26I GTCTC 2 cut(s) 176, 518
AlwI GGATC 1 cut(s) 50
Aor51HI AGCGCT 1 cut(s) 1366
AoxI GGCC 5 cut(s) 22, 411, 806, 820, 1556
ApeKI GCWGC 5 cut(s) 868, 978, 981, 1181, 1567
ApoI RAATTY 4 cut(s) 148, 776, 1157, 1701
ArsI GACNNNNNNTTYG 2 cut(s) 978, 1010
AspLEI GCGC 2 cut(s) 408, 1367
AspS9I GGNCC 2 cut(s) 1150, 1557
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 1101, 1122, 1150
AsuII TTCGAA 1 cut(s) 1495
AvaII GGWCC 1 cut(s) 1150
BauI CACGAG 1 cut(s) 521
BbsI GAAGAC 3 cut(s) 594, 994, 1606
BbvI GCAGC 5 cut(s) 855, 968, 990, 1168, 1554
BccI CCATC 9 cut(s) 21, 614, 769, 883, 1135, 1141, 1270, 1346, 1642
BciT130I CCWGG 6 cut(s) 87, 197, 310, 1134, 1355, 1551
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 176, 518
BfaI CTAG 4 cut(s) 804, 876, 1347, 1575
BfmI CTRYAG 2 cut(s) 840, 1116
BfoI RGCGCY 1 cut(s) 1368
BfuAI ACCTGC 1 cut(s) 118
BglII AGATCT 2 cut(s) 500, 932
BisI GCNGC 6 cut(s) 246, 869, 979, 982, 1182, 1568
BlpI GCTNAGC 1 cut(s) 1587
BlsI GCNGC 6 cut(s) 247, 870, 980, 983, 1183, 1569
Bme1390I CCNGG 7 cut(s) 87, 197, 242, 310, 1134, 1355, 1551
Bme18I GGWCC 1 cut(s) 1150
BmeRI GACNNNNNGTC 1 cut(s) 1126
BmgT120I GGNCC 2 cut(s) 1150, 1557
BmiI GGNNCC 1 cut(s) 1559
BmrFI CCNGG 7 cut(s) 87, 197, 242, 310, 1134, 1355, 1551
BmsI GCATC 4 cut(s) 191, 1089, 1228, 1528
BpiI GAAGAC 3 cut(s) 594, 994, 1606
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 445
Bpu1102I GCTNAGC 1 cut(s) 1587
Bpu14I TTCGAA 1 cut(s) 1495
BpuEI CTTGAG 4 cut(s) 299, 400, 949, 1056
BpuMI CCSGG 1 cut(s) 242
BsaBI GATNNNNATC 2 cut(s) 1227, 1242
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 308, 1016, 1133
Bsc4I CCNNNNNNNGG 4 cut(s) 228, 229, 230, 248
Bse1I ACTGG 2 cut(s) 651, 795
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 2 cut(s) 1227, 1242
BseBI CCWGG 6 cut(s) 87, 197, 310, 1134, 1355, 1551
BseDI CCNNGG 3 cut(s) 308, 1016, 1133
BseGI GGATG 2 cut(s) 139, 1637
BseJI GATNNNNATC 2 cut(s) 1227, 1242
BseLI CCNNNNNNNGG 4 cut(s) 228, 229, 230, 248
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 248, 285, 1206
BseNI ACTGG 2 cut(s) 651, 795
BseXI GCAGC 5 cut(s) 855, 968, 990, 1168, 1554
BseYI CCCAGC 3 cut(s) 42, 341, 1679
BsgI GTGCAG 1 cut(s) 854
BshFI GGCC 5 cut(s) 24, 413, 808, 822, 1558
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 2 cut(s) 101, 645
BslI CCNNNNNNNGG 4 cut(s) 228, 229, 230, 248
BsmAI GTCTC 2 cut(s) 176, 518
BsmFI GGGAC 2 cut(s) 101, 645
BsnI GGCC 5 cut(s) 24, 413, 808, 822, 1558
Bso31I GGTCTC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 1495
Bsp143I GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
Bsp1720I GCTNAGC 1 cut(s) 1587
BspACI CCGC 3 cut(s) 245, 866, 1232
BspANI GGCC 5 cut(s) 24, 413, 808, 822, 1558
BspCNI CTCAG 3 cut(s) 249, 286, 1205
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 1559
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 1523
BspT104I TTCGAA 1 cut(s) 1495
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 651, 795
BssECI CCNNGG 3 cut(s) 308, 1016, 1133
BssMI GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
BssSI CACGAG 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 1016
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 6 cut(s) 87, 197, 310, 1134, 1355, 1551
Bst4CI ACNGT 2 cut(s) 369, 475
Bst6I CTCTTC 2 cut(s) 749, 1523
BstBI TTCGAA 1 cut(s) 1495
BstC8I GCNNGC 5 cut(s) 67, 250, 594, 873, 1424
BstDEI CTNAG 6 cut(s) 257, 294, 445, 1192, 1587, 1592
BstF5I GGATG 2 cut(s) 139, 1637
BstH2I RGCGCY 1 cut(s) 1368
BstHHI GCGC 2 cut(s) 408, 1367
BstKTI GATC 6 cut(s) 40, 58, 503, 935, 952, 1574
BstMAI GTCTC 2 cut(s) 176, 518
BstMBI GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
BstMWI GCNNNNNNNGC 4 cut(s) 1373, 1489, 1498, 1564
BstNI CCWGG 6 cut(s) 87, 197, 310, 1134, 1355, 1551
BstNSI RCATGY 2 cut(s) 1426, 1452
BstSCI CCNGG 7 cut(s) 85, 195, 240, 308, 1132, 1353, 1549
BstSFI CTRYAG 2 cut(s) 840, 1116
BstV1I GCAGC 5 cut(s) 855, 968, 990, 1168, 1554
BstV2I GAAGAC 3 cut(s) 594, 994, 1606
BstX2I RGATCY 2 cut(s) 500, 932
BstYI RGATCY 2 cut(s) 500, 932
BsuRI GGCC 5 cut(s) 24, 413, 808, 822, 1558
BtsCI GGATG 2 cut(s) 139, 1637
BtsI GCAGTG 1 cut(s) 1043
BtsIMutI CAGTG 3 cut(s) 583, 802, 1043
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 5 cut(s) 67, 250, 594, 873, 1424
CciI TCATGA 1 cut(s) 121
CfoI GCGC 2 cut(s) 408, 1367
Cfr13I GGNCC 2 cut(s) 1150, 1557
CseI GACGC 1 cut(s) 824
CsiI ACCWGGT 1 cut(s) 1549
Csp6I GTAC 3 cut(s) 267, 291, 1397
CviAII CATG 5 cut(s) 122, 158, 1423, 1449, 1510
CviQI GTAC 3 cut(s) 267, 291, 1397
DdeI CTNAG 6 cut(s) 257, 294, 445, 1192, 1587, 1592
DpnI GATC 6 cut(s) 39, 57, 502, 934, 951, 1573
DpnII GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
DriI GACNNNNNGTC 1 cut(s) 1126
Eam1104I CTCTTC 2 cut(s) 749, 1523
Eam1105I GACNNNNNGTC 1 cut(s) 1126
EarI CTCTTC 2 cut(s) 749, 1523
EciI GGCGGA 1 cut(s) 1221
Eco130I CCWWGG 1 cut(s) 1016
Eco147I AGGCCT 1 cut(s) 822
Eco31I GGTCTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 1150
Eco47III AGCGCT 1 cut(s) 1366
Eco57I CTGAAG 2 cut(s) 443, 1547
EcoRII CCWGG 6 cut(s) 85, 195, 308, 1132, 1353, 1549
EcoRV GATATC 1 cut(s) 675
EcoT14I CCWWGG 1 cut(s) 1016
ErhI CCWWGG 1 cut(s) 1016
FaeI CATG 5 cut(s) 125, 161, 1426, 1452, 1513
FalI AAGNNNNNCTT 4 cut(s) 330, 362, 1377, 1409
FaqI GGGAC 2 cut(s) 101, 645
FatI CATG 5 cut(s) 121, 157, 1422, 1448, 1509
FblI GTMKAC 2 cut(s) 206, 1119
Fnu4HI GCNGC 6 cut(s) 246, 869, 979, 982, 1182, 1568
FokI GGATG 2 cut(s) 146, 1624
Fsp4HI GCNGC 6 cut(s) 246, 869, 979, 982, 1182, 1568
FspBI CTAG 4 cut(s) 804, 876, 1347, 1575
GlaI GCGC 2 cut(s) 407, 1366
GluI GCNGC 6 cut(s) 246, 869, 979, 982, 1182, 1568
GsaI CCCAGC 3 cut(s) 46, 345, 1683
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 1368
HaeIII GGCC 5 cut(s) 24, 413, 808, 822, 1558
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 824
HhaI GCGC 2 cut(s) 408, 1367
Hin1II CATG 5 cut(s) 125, 161, 1426, 1452, 1513
Hin6I GCGC 2 cut(s) 406, 1365
HinP1I GCGC 2 cut(s) 406, 1365
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HindIII AAGCTT 2 cut(s) 1276, 1589
HinfI GANTC 7 cut(s) 137, 200, 428, 689, 757, 800, 1350
HpaII CCGG 1 cut(s) 242
HphI GGTGA 3 cut(s) 1101, 1122, 1150
Hpy166II GTNNAC 3 cut(s) 207, 552, 1120
Hpy188I TCNGA 6 cut(s) 258, 433, 498, 858, 1084, 1195
Hpy188III TCNNGA 4 cut(s) 122, 886, 1153, 1347
Hpy8I GTNNAC 3 cut(s) 207, 552, 1120
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 8 cut(s) 332, 428, 565, 968, 1122, 1491, 1571, 1651
HpyCH4III ACNGT 2 cut(s) 369, 475
HpyCH4IV ACGT 2 cut(s) 212, 615
HpyCH4V TGCA 8 cut(s) 182, 658, 871, 958, 984, 1048, 1216, 1452
HpyF10VI GCNNNNNNNGC 4 cut(s) 1373, 1489, 1498, 1564
HpyF3I CTNAG 6 cut(s) 257, 294, 445, 1192, 1587, 1592
HpySE526I ACGT 2 cut(s) 212, 615
Hsp92II CATG 5 cut(s) 125, 161, 1426, 1452, 1513
HspAI GCGC 2 cut(s) 406, 1365
Kzo9I GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
LguI GCTCTTC 1 cut(s) 1523
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 5 cut(s) 855, 968, 990, 1168, 1554
LweI GCATC 4 cut(s) 191, 1089, 1228, 1528
MabI ACCWGGT 1 cut(s) 1549
MaeI CTAG 4 cut(s) 804, 876, 1347, 1575
MaeII ACGT 2 cut(s) 212, 615
MaeIII GTNAC 1 cut(s) 1128
MalI GATC 6 cut(s) 39, 57, 502, 934, 951, 1573
MboI GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
MboII GAAGA 8 cut(s) 157, 449, 594, 594, 766, 994, 1540, 1611
MfeI CAATTG 1 cut(s) 401
MflI RGATCY 2 cut(s) 500, 932
MlyI GAGTC 2 cut(s) 766, 809
MseI TTAA 5 cut(s) 152, 189, 356, 728, 1026
MslI CAYNNNNRTG 1 cut(s) 1221
MspA1I CMGCKG 4 cut(s) 868, 981, 1181, 1567
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 7 cut(s) 87, 197, 242, 310, 1134, 1355, 1551
MunI CAATTG 1 cut(s) 401
MvaI CCWGG 6 cut(s) 87, 197, 310, 1134, 1355, 1551
MwoI GCNNNNNNNGC 4 cut(s) 1373, 1489, 1498, 1564
NciI CCSGG 1 cut(s) 242
NdeII GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
NlaIII CATG 5 cut(s) 125, 161, 1426, 1452, 1513
NlaIV GGNNCC 1 cut(s) 1559
NmuCI GTSAC 1 cut(s) 1128
NspI RCATGY 2 cut(s) 1426, 1452
NspV TTCGAA 1 cut(s) 1495
PaeI GCATGC 1 cut(s) 1426
PagI TCATGA 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 118
PceI AGGCCT 1 cut(s) 822
PciSI GCTCTTC 1 cut(s) 1523
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PfeI GAWTC 5 cut(s) 137, 200, 428, 689, 1350
PfoI TCCNGGA 3 cut(s) 85, 195, 1353
PkrI GCNGC 6 cut(s) 247, 870, 980, 983, 1183, 1569
PleI GAGTC 2 cut(s) 765, 808
PpsI GAGTC 2 cut(s) 765, 808
Psp6I CCWGG 6 cut(s) 85, 195, 308, 1132, 1353, 1549
PspFI CCCAGC 3 cut(s) 42, 341, 1679
PspGI CCWGG 6 cut(s) 85, 195, 308, 1132, 1353, 1549
PspN4I GGNNCC 1 cut(s) 1559
PspPI GGNCC 2 cut(s) 1150, 1557
PsuI RGATCY 2 cut(s) 500, 932
PvuII CAGCTG 3 cut(s) 981, 1181, 1567
RsaI GTAC 3 cut(s) 268, 292, 1398
RsaNI GTAC 3 cut(s) 267, 291, 1397
RseI CAYNNNNRTG 1 cut(s) 1221
SapI GCTCTTC 1 cut(s) 1523
SaqAI TTAA 5 cut(s) 152, 189, 356, 728, 1026
SatI GCNGC 6 cut(s) 246, 869, 979, 982, 1182, 1568
Sau3AI GATC 6 cut(s) 37, 55, 500, 932, 949, 1571
Sau96I GGNCC 2 cut(s) 1150, 1557
SchI GAGTC 2 cut(s) 766, 809
ScrFI CCNGG 7 cut(s) 87, 197, 242, 310, 1134, 1355, 1551
SexAI ACCWGGT 1 cut(s) 1549
SfaNI GCATC 4 cut(s) 191, 1089, 1228, 1528
SfcI CTRYAG 2 cut(s) 840, 1116
SfuI TTCGAA 1 cut(s) 1495
SinI GGWCC 1 cut(s) 1150
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 5 cut(s) 18, 314, 415, 928, 1071
SmoI CTYRAG 5 cut(s) 18, 314, 415, 928, 1071
SphI GCATGC 1 cut(s) 1426
SseBI AGGCCT 1 cut(s) 822
SsiI CCGC 3 cut(s) 245, 866, 1232
SspMI CTAG 4 cut(s) 804, 876, 1347, 1575
StuI AGGCCT 1 cut(s) 822
StyD4I CCNGG 7 cut(s) 85, 195, 240, 308, 1132, 1353, 1549
StyI CCWWGG 1 cut(s) 1016
TaaI ACNGT 2 cut(s) 369, 475
TaiI ACGT 2 cut(s) 215, 618
TaqI TCGA 4 cut(s) 426, 711, 1495, 1651
TatI WGTACW 1 cut(s) 290
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 5 cut(s) 137, 200, 428, 689, 1350
Tru1I TTAA 5 cut(s) 152, 189, 356, 728, 1026
Tru9I TTAA 5 cut(s) 152, 189, 356, 728, 1026
TscAI CASTG 3 cut(s) 583, 802, 1050
TseFI GTSAC 1 cut(s) 1128
TseI GCWGC 5 cut(s) 868, 978, 981, 1181, 1567
Tsp45I GTSAC 1 cut(s) 1128
TspDTI ATGAA 7 cut(s) 702, 789, 918, 1077, 1187, 1239, 1633
TspRI CASTG 3 cut(s) 583, 802, 1050
VpaK11BI GGWCC 1 cut(s) 1150
XapI RAATTY 4 cut(s) 148, 776, 1157, 1701
XbaI TCTAGA 1 cut(s) 1346
XceI RCATGY 2 cut(s) 1426, 1452
XmiI GTMKAC 2 cut(s) 206, 1119
XspI CTAG 4 cut(s) 804, 876, 1347, 1575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.