Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8347803.1

Orthogroup ID

OG0007247

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 958

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8347803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggagttatctttcacacaaggacgctggaattatgatcagtggggtgggtttgatcccatatcaagcagcaatgcgaaacctcctggagttgagttgtgggctgtatttgatgtccctcatgaacaggtggatgattcctggaagaatttaacccatgctctttcaggtctcttctgtgcttcaatcaactttctagaatcttctacaacatattctgctcctgactggggttatcgcccagattcaggcagcctgaggtatggttcattgccccgtgaggctgtttgcactgagaacctaacaccctggctgaagctccttccttgtcgagataaagctgggctctctacattaatgcatagaccatctatctacaagggatattatcattcacagcggttgcgcttgacatcaagtgaatttgaaccagagggggtaggctccggcattgtcctggaacaaacactcacagtggttgtacagccttctagtcagagaactgtgaggagctattctcatgaaacaaaattgcaacctagctggtccttgacttcaatttttggaaggaaggtcagtagtagatgtgttcttgccaagtcttccattgtataccttcagcttgatggcagtctagttgctgaactggatagcttgcagaaagaaaataagatatctagtgctgataattatgtatctgaaggtgttaggagcaatgcttgctttgaagtatctgttaagcctgatagggtgttaaaagaactgcaaggcgttgaaaaaaggagcccatctgttctgtatgaattttctattgacaagtacaatgagtctgggccgtttgatttaggcctaacttggaaggttcctgtagcttggtcctgtcagaaagcaccattacatgttagtaggttcttgatgggaagtgggaatgaaaggggcgctattgcaatatccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008219 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0019538 GO:0019637 GO:0022008 GO:0030154 GO:0030176 GO:0030182 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051402 GO:0070997 GO:0071704 GO:0090407 GO:0097708 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gpi16

Protein Analysis

319

Amino Acids

35.54

Weight (kDa)

6.61

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07140 AT3G07140
fragaria_vesca	FvH4_2g18730 FvH4_2g18730 FvH4_2g18730 FvH4_2g18730 FvH4_2g18730
malus_domestica	MD13G1217900.v1.1 MD16G1223000.v1.1
prunus_persica	Prupe.8G200800_v2.0.a1 Prupe.8G200800_v2.0.a1
pyrus_communis	pycom13g19110
rosa_chinensis	RchiOBHm_Chr6g0284351
rosa_laevigata	RLG00000012748
rosa_multiflora	Rmu_co8347803.1_g000001 Rmu_sc0002698.1_g000003 Rmu_sc0018899.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184730
rosa_rugosa	Rorug06G0162800 Rorug06G0162900
rosa_samantha	Rh6AG275400 Rh6BG276000 Rh6CG277800 Rh6DG270600
rosa_wichuraiana	Rw6G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	148, 422, 803
AcuI	CTGAAG	3 cut(s)	335, 602, 720
AfaI	GTAC	2 cut(s)	483, 821
AfiI	CCNNNNNNNGG	2 cut(s)	230, 248
AflIII	ACRYGT	1 cut(s)	898
AgsI	TTSAA	5 cut(s)	186, 428, 558, 728, 776
AjnI	CCWGG	4 cut(s)	85, 140, 308, 456
AluBI	AGCT	7 cut(s)	319, 341, 513, 543, 622, 654, 872
AluI	AGCT	7 cut(s)	319, 341, 513, 543, 622, 654, 872
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	2 cut(s)	833, 847
ApeKI	GCWGC	2 cut(s)	69, 252
ApoI	RAATTY	3 cut(s)	148, 422, 803
AseI	ATTAAT	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	408, 941
AspS9I	GGNCC	3 cut(s)	546, 833, 876
AvaII	GGWCC	2 cut(s)	546, 876
AxyI	CCTNAGG	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	348, 788
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	81, 264
BccI	CCATC	4 cut(s)	376, 620, 796, 910
BceAI	ACGGC	1 cut(s)	820
BciT130I	CCWGG	4 cut(s)	87, 142, 310, 458
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	5 cut(s)	197, 492, 540, 635, 678
BfmI	CTRYAG	1 cut(s)	867
BfoI	RGCGCY	1 cut(s)	942
BisI	GCNGC	2 cut(s)	70, 253
BlsI	GCNGC	2 cut(s)	71, 254
Bme1390I	CCNGG	4 cut(s)	87, 142, 310, 458
Bme18I	GGWCC	2 cut(s)	546, 876
BmgT120I	GGNCC	3 cut(s)	546, 833, 876
BmiI	GGNNCC	3 cut(s)	445, 785, 864
BmrFI	CCNGG	4 cut(s)	87, 142, 310, 458
BmrI	ACTGGG	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	594
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 248
Bse1I	ACTGG	2 cut(s)	233, 651
Bse21I	CCTNAGG	1 cut(s)	257
Bse3DI	GCAATG	3 cut(s)	79, 269, 721
BseBI	CCWGG	4 cut(s)	87, 142, 310, 458
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	230, 248
BseMI	GCAATG	3 cut(s)	79, 269, 721
BseMII	CTCAG	2 cut(s)	248, 285
BseNI	ACTGG	2 cut(s)	233, 651
BseRI	GAGGAG	1 cut(s)	523
BseXI	GCAGC	2 cut(s)	81, 264
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	835, 849
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	230, 248
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	835, 849
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	348, 788
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	37, 55
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	2 cut(s)	835, 849
BspCNI	CTCAG	2 cut(s)	249, 286
BspHI	TCATGA	2 cut(s)	121, 520
BspLI	GGNNCC	3 cut(s)	445, 785, 864
BspPI	GGATC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	3 cut(s)	79, 269, 721
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	233, 651
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	37, 55
BssNAI	GTATAC	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	4 cut(s)	87, 142, 310, 458
Bst4CI	ACNGT	2 cut(s)	475, 505
Bst6I	CTCTTC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	720
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	656, 721
BstDEI	CTNAG	2 cut(s)	257, 294
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	942
BstHHI	GCGC	2 cut(s)	408, 941
BstKTI	GATC	2 cut(s)	40, 58
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	37, 55
BstMWI	GCNNNNNNNGC	1 cut(s)	720
BstNI	CCWGG	4 cut(s)	87, 142, 310, 458
BstNSI	RCATGY	1 cut(s)	902
BstSCI	CCNGG	4 cut(s)	85, 140, 308, 456
BstSFI	CTRYAG	1 cut(s)	867
BstV1I	GCAGC	2 cut(s)	81, 264
BstV2I	GAAGAC	1 cut(s)	594
BstZ17I	GTATAC	1 cut(s)	613
Bsu36I	CCTNAGG	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	835, 849
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	47, 291, 480
Cac8I	GCNNGC	2 cut(s)	656, 721
CciI	TCATGA	2 cut(s)	121, 520
CfoI	GCGC	2 cut(s)	408, 941
Cfr13I	GGNCC	3 cut(s)	546, 833, 876
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	482, 820
CviAII	CATG	4 cut(s)	122, 158, 521, 899
CviQI	GTAC	2 cut(s)	482, 820
DdeI	CTNAG	2 cut(s)	257, 294
DpnI	GATC	2 cut(s)	39, 57
DpnII	GATC	2 cut(s)	37, 55
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	849
Eco24I	GRGCYC	2 cut(s)	348, 788
Eco31I	GGTCTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	675
Eco47I	GGWCC	2 cut(s)	546, 876
Eco57I	CTGAAG	3 cut(s)	335, 602, 720
Eco81I	CCTNAGG	1 cut(s)	257
EcoRII	CCWGG	4 cut(s)	85, 140, 308, 456
EcoRV	GATATC	1 cut(s)	675
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	2 cut(s)	348, 788
FaeI	CATG	4 cut(s)	125, 161, 524, 902
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	4 cut(s)	121, 157, 520, 898
FbaI	TGATCA	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	70, 253
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	2 cut(s)	348, 788
Fsp4HI	GCNGC	2 cut(s)	70, 253
FspBI	CTAG	5 cut(s)	197, 492, 540, 635, 678
GlaI	GCGC	2 cut(s)	407, 940
GluI	GCNGC	2 cut(s)	70, 253
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	835, 849
HapII	CCGG	1 cut(s)	447
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	2 cut(s)	408, 941
Hin1II	CATG	4 cut(s)	125, 161, 524, 902
Hin6I	GCGC	2 cut(s)	406, 939
HinP1I	GCGC	2 cut(s)	406, 939
HinfI	GANTC	4 cut(s)	137, 200, 245, 827
HpaII	CCGG	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	3 cut(s)	498, 700, 885
Hpy188III	TCNNGA	6 cut(s)	122, 197, 224, 332, 521, 913
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	7 cut(s)	332, 498, 561, 565, 626, 695, 853
HpyCH4III	ACNGT	2 cut(s)	475, 505
HpyCH4V	TGCA	6 cut(s)	291, 361, 535, 658, 766, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	720
HpyF3I	CTNAG	2 cut(s)	257, 294
Hsp92II	CATG	4 cut(s)	125, 161, 524, 902
HspAI	GCGC	2 cut(s)	406, 939
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	37, 55
LmnI	GCTCC	6 cut(s)	226, 324, 449, 510, 711, 783
Lsp1109I	GCAGC	2 cut(s)	81, 264
MaeI	CTAG	5 cut(s)	197, 492, 540, 635, 678
MalI	GATC	2 cut(s)	39, 57
MboI	GATC	2 cut(s)	37, 55
MboII	GAAGA	4 cut(s)	157, 166, 195, 594
MhlI	GDGCHC	2 cut(s)	348, 788
MluCI	AATT	7 cut(s)	31, 148, 422, 530, 558, 688, 803
MlyI	GAGTC	1 cut(s)	836
MnlI	CCTC	6 cut(s)	93, 129, 252, 274, 427, 501
Mph1103I	ATGCAT	1 cut(s)	363
MseI	TTAA	4 cut(s)	152, 356, 738, 755
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	4 cut(s)	87, 142, 310, 458
MvaI	CCWGG	4 cut(s)	87, 142, 310, 458
MwoI	GCNNNNNNNGC	1 cut(s)	720
NdeII	GATC	2 cut(s)	37, 55
NlaIII	CATG	4 cut(s)	125, 161, 524, 902
NlaIV	GGNNCC	3 cut(s)	445, 785, 864
NsiI	ATGCAT	1 cut(s)	363
NspI	RCATGY	1 cut(s)	902
PagI	TCATGA	2 cut(s)	121, 520
PceI	AGGCCT	1 cut(s)	849
PciI	ACATGT	1 cut(s)	898
PfeI	GAWTC	3 cut(s)	137, 200, 245
PfoI	TCCNGGA	3 cut(s)	85, 140, 456
PkrI	GCNGC	2 cut(s)	71, 254
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
PscI	ACATGT	1 cut(s)	898
PshBI	ATTAAT	1 cut(s)	356
Psp6I	CCWGG	4 cut(s)	85, 140, 308, 456
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	4 cut(s)	85, 140, 308, 456
PspN4I	GGNNCC	3 cut(s)	445, 785, 864
PspPI	GGNCC	3 cut(s)	546, 833, 876
RsaI	GTAC	2 cut(s)	483, 821
RsaNI	GTAC	2 cut(s)	482, 820
SaqAI	TTAA	4 cut(s)	152, 356, 738, 755
SatI	GCNGC	2 cut(s)	70, 253
Sau3AI	GATC	2 cut(s)	37, 55
Sau96I	GGNCC	3 cut(s)	546, 833, 876
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	4 cut(s)	87, 142, 310, 458
SduI	GDGCHC	2 cut(s)	348, 788
SfcI	CTRYAG	1 cut(s)	867
SinI	GGWCC	2 cut(s)	546, 876
Sse9I	AATT	7 cut(s)	31, 148, 422, 530, 558, 688, 803
SseBI	AGGCCT	1 cut(s)	849
SsiI	CCGC	1 cut(s)	400
SspMI	CTAG	5 cut(s)	197, 492, 540, 635, 678
StuI	AGGCCT	1 cut(s)	849
StyD4I	CCNGG	4 cut(s)	85, 140, 308, 456
TaaI	ACNGT	2 cut(s)	475, 505
TaqI	TCGA	1 cut(s)	331
TasI	AATT	7 cut(s)	31, 148, 422, 530, 558, 688, 803
TatI	WGTACW	2 cut(s)	481, 819
TfiI	GAWTC	3 cut(s)	137, 200, 245
Tru1I	TTAA	4 cut(s)	152, 356, 738, 755
Tru9I	TTAA	4 cut(s)	152, 356, 738, 755
TscAI	CASTG	3 cut(s)	47, 298, 480
TseI	GCWGC	2 cut(s)	69, 252
TspDTI	ATGAA	5 cut(s)	138, 258, 537, 816, 945
TspRI	CASTG	3 cut(s)	47, 298, 480
VpaK11BI	GGWCC	2 cut(s)	546, 876
VspI	ATTAAT	1 cut(s)	356
XapI	RAATTY	3 cut(s)	148, 422, 803
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	5 cut(s)	197, 492, 540, 635, 678
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.