AT3G10580
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0022004
Physical Location & Seq
Reverse (-)
3307051 .. 3308237
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10580.2

Sequence Viewer

Length: 864 bp
ATGGATGCAGCAATTCCGATTTGGAAGAGGGACGATGATAAGCGTTTTGAGTTAGCTCTGGTTCGATTCCCTGCTGAGGGTTCGCCGGATTTTTTAGAGAATATCGCTCAGTTTCTGCAGAAACCGTTAAAGGAGGTGTACTCCTACTACCAAGCCTTGGTCGATGATGTTACGCTGATCGAATCGGGTAAGTATCCTTTGCCCAAGTACCCGGAAGATGATTACGTGTCACTGCCGGAAGCGACTAAGTCTAAAACCCAGGGCACGGGGAAAAAGAAGGGAATACCTTGGTCACCAGAAGAACACAGATTGTTTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCATATCGAGGGAATGTGTGACGTCAAGGAGCCCGATGCAAGTGGCAAGCCATGCTCAGAAGTATTTCTTAAGGCAAAAAAATAAGAAGGGGAAACGCTTCAGTATCCATGATATGACTCTGGGAGATGCCGAAAATGTAACCGTCCCTGTATCCAACTTGAATTCTATGGGCCAGCAGCCACATTTTGATGACCAAAGTCCTCCGGATCATTATCAAGACTACTTCTCCCAGAGCAATGTAACCATCCCTGGATGCAACATGCACTTTATGGGCCAGCAACCACGTTTTGGTGACCAAATTCCTCCGGGTGAATATCACCCCTACTCCCGGGACAATGTAACCGTCACTGGATCCAACTTGAATTCTATTGGCCAGCAGCCACATTTTAATGACCAAATTTCTCCGGATCAATATGGCCGCTACTTGCAGGAAAACTTCGGGTTTTTCGATGATGATGGTGAAGATGATGGGAGTTTAGCAAGCTTTCAACAACTATACAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.74

Weight (kDa)

5.38

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 96 - 141 1.8e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10580 AT3G10580 AT3G10585 AT4G09450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 380
AccB7I CCANNNNNTGG 2 cut(s) 157, 644
AccIII TCCGGA 2 cut(s) 559, 760
AciI CCGC 1 cut(s) 775
AclWI GGATC 4 cut(s) 570, 702, 715, 771
AcoI YGGCCR 2 cut(s) 727, 772
AcsI RAATTY 4 cut(s) 517, 654, 718, 753
AcuI CTGAAG 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 2 cut(s) 140, 209
AfiI CCNNNNNNNGG 6 cut(s) 76, 77, 157, 265, 644, 684
AflII CTTAAG 1 cut(s) 424
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 3 cut(s) 517, 718, 845
AjnI CCWGG 2 cut(s) 258, 604
AluBI AGCT 2 cut(s) 56, 840
AluI AGCT 2 cut(s) 56, 840
AlwI GGATC 4 cut(s) 570, 702, 715, 771
AlwNI CAGNNNCTG 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 684
Aor13HI TCCGGA 2 cut(s) 559, 760
AoxI GGCC 4 cut(s) 526, 628, 727, 772
ApeKI GCWGC 3 cut(s) 8, 532, 733
ApoI RAATTY 4 cut(s) 517, 654, 718, 753
Asp700I GAANNNNTTC 2 cut(s) 419, 452
AspS9I GGNCC 2 cut(s) 526, 628
AsuC2I CCSGG 4 cut(s) 212, 663, 685, 686
AsuHPI GGTGA 5 cut(s) 285, 659, 665, 677, 827
AvaI CYCGRG 1 cut(s) 684
BaeGI GKGCMC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 729
BamHI GGATCC 1 cut(s) 707
BanII GRGCYC 1 cut(s) 389
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 3 cut(s) 20, 544, 745
BccI CCATC 4 cut(s) 314, 608, 806, 818
BciT130I CCWGG 2 cut(s) 260, 606
BciVI GTATCC 3 cut(s) 204, 470, 517
BcnI CCSGG 4 cut(s) 212, 663, 685, 686
BfmI CTRYAG 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 424
BfuI GTATCC 3 cut(s) 204, 470, 517
BisI GCNGC 4 cut(s) 9, 533, 734, 775
BlsI GCNGC 4 cut(s) 10, 534, 735, 776
Bme1390I CCNGG 6 cut(s) 212, 260, 606, 663, 685, 686
BmeT110I CYCGRG 1 cut(s) 684
BmgT120I GGNCC 2 cut(s) 526, 628
BmiI GGNNCC 2 cut(s) 386, 709
BmrFI CCNGG 6 cut(s) 212, 260, 606, 663, 685, 686
BmsI GCATC 3 cut(s) 381, 472, 599
BoxI GACNNNNGTC 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu10I CCTNAGC 1 cut(s) 75
BpuMI CCSGG 4 cut(s) 212, 663, 685, 686
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 6 cut(s) 156, 258, 259, 287, 604, 684
BsaWI WCCGGW 2 cut(s) 559, 760
BsaXI ACNNNNNCTCC 4 cut(s) 566, 596, 665, 695
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 77, 157, 265, 644, 684
Bse1I ACTGG 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 567
BseAI TCCGGA 2 cut(s) 559, 760
BseBI CCWGG 2 cut(s) 260, 606
BseDI CCNNGG 6 cut(s) 156, 258, 259, 287, 604, 684
BseGI GGATG 4 cut(s) 10, 325, 600, 614
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 6 cut(s) 76, 77, 157, 265, 644, 684
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 3 cut(s) 66, 122, 425
BseNI ACTGG 1 cut(s) 709
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 3 cut(s) 20, 544, 745
BshFI GGCC 4 cut(s) 528, 630, 729, 774
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 7 cut(s) 86, 212, 236, 560, 662, 685, 761
BslFI GGGAC 3 cut(s) 44, 485, 701
BslI CCNNNNNNNGG 6 cut(s) 76, 77, 157, 265, 644, 684
BsmFI GGGAC 3 cut(s) 44, 485, 701
BsnI GGCC 4 cut(s) 528, 630, 729, 774
BsoBI CYCGRG 1 cut(s) 684
Bsp1286I GDGCHC 2 cut(s) 266, 389
Bsp13I TCCGGA 2 cut(s) 559, 760
Bsp143I GATC 4 cut(s) 177, 562, 707, 763
BspACI CCGC 1 cut(s) 775
BspANI GGCC 4 cut(s) 528, 630, 729, 774
BspCNI CTCAG 3 cut(s) 67, 121, 424
BspEI TCCGGA 2 cut(s) 559, 760
BspLI GGNNCC 2 cut(s) 386, 709
BspMAI CTGCAG 1 cut(s) 120
BspPI GGATC 4 cut(s) 570, 702, 715, 771
BspQI GCTCTTC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 598
BsrI ACTGG 1 cut(s) 709
BssECI CCNNGG 6 cut(s) 156, 258, 259, 287, 604, 684
BssMI GATC 4 cut(s) 177, 562, 707, 763
BssNI GRCGYC 1 cut(s) 377
BssT1I CCWWGG 2 cut(s) 156, 287
Bst2UI CCWGG 2 cut(s) 260, 606
Bst4CI ACNGT 3 cut(s) 126, 499, 700
Bst6I CTCTTC 2 cut(s) 20, 347
BstACI GRCGYC 1 cut(s) 377
BstAFI CTTAAG 1 cut(s) 424
BstAPI GCANNNNNTGC 1 cut(s) 407
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 5 cut(s) 403, 530, 632, 731, 838
BstDEI CTNAG 4 cut(s) 75, 108, 246, 411
BstEII GGTNACC 2 cut(s) 291, 647
BstF5I GGATG 4 cut(s) 10, 325, 600, 614
BstKTI GATC 4 cut(s) 180, 565, 710, 766
BstMBI GATC 4 cut(s) 177, 562, 707, 763
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 2 cut(s) 260, 606
BstNSI RCATGY 1 cut(s) 619
BstPAI GACNNNNGTC 1 cut(s) 552
BstPI GGTNACC 2 cut(s) 291, 647
BstSCI CCNGG 6 cut(s) 210, 258, 604, 661, 683, 684
BstSFI CTRYAG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 20, 544, 745
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
BsuI GTATCC 3 cut(s) 204, 470, 517
BsuRI GGCC 4 cut(s) 528, 630, 729, 774
BtsCI GGATG 4 cut(s) 10, 325, 600, 614
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 230, 702
Cac8I GCNNGC 5 cut(s) 403, 530, 632, 731, 838
CaiI CAGNNNCTG 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 526, 628
Cfr9I CCCGGG 1 cut(s) 684
Csp6I GTAC 2 cut(s) 139, 208
CviAII CATG 3 cut(s) 407, 464, 616
CviQI GTAC 2 cut(s) 139, 208
DdeI CTNAG 4 cut(s) 75, 108, 246, 411
DpnI GATC 4 cut(s) 179, 564, 709, 765
DpnII GATC 4 cut(s) 177, 562, 707, 763
EaeI YGGCCR 2 cut(s) 727, 772
Eam1104I CTCTTC 2 cut(s) 20, 347
EarI CTCTTC 2 cut(s) 20, 347
Eco130I CCWWGG 2 cut(s) 156, 287
Eco24I GRGCYC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 684
Eco91I GGTNACC 2 cut(s) 291, 647
EcoO65I GGTNACC 2 cut(s) 291, 647
EcoRI GAATTC 2 cut(s) 517, 718
EcoRII CCWGG 2 cut(s) 258, 604
EcoT14I CCWWGG 2 cut(s) 156, 287
EcoT38I GRGCYC 1 cut(s) 389
ErhI CCWWGG 2 cut(s) 156, 287
FaeI CATG 3 cut(s) 410, 467, 619
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 3 cut(s) 44, 485, 701
FatI CATG 3 cut(s) 406, 463, 615
Fnu4HI GCNGC 4 cut(s) 9, 533, 734, 775
FokI GGATG 4 cut(s) 17, 332, 587, 621
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 4 cut(s) 9, 533, 734, 775
GluI GCNGC 4 cut(s) 9, 533, 734, 775
HaeIII GGCC 4 cut(s) 528, 630, 729, 774
HapII CCGG 7 cut(s) 86, 212, 236, 560, 662, 685, 761
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 3 cut(s) 410, 467, 619
HindIII AAGCTT 1 cut(s) 838
HinfI GANTC 3 cut(s) 66, 182, 472
HpaII CCGG 7 cut(s) 86, 212, 236, 560, 662, 685, 761
HphI GGTGA 5 cut(s) 285, 659, 665, 677, 827
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 18, 414
Hpy188III TCNNGA 3 cut(s) 560, 572, 761
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 271, 436
HpyCH4III ACNGT 3 cut(s) 126, 499, 700
HpyCH4IV ACGT 3 cut(s) 225, 377, 640
HpyCH4V TGCA 6 cut(s) 8, 118, 394, 612, 619, 784
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 4 cut(s) 75, 108, 246, 411
HpySE526I ACGT 3 cut(s) 225, 377, 640
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 3 cut(s) 410, 467, 619
Kpn2I TCCGGA 2 cut(s) 559, 760
Kzo9I GATC 4 cut(s) 177, 562, 707, 763
LguI GCTCTTC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 3 cut(s) 20, 544, 745
LweI GCATC 3 cut(s) 381, 472, 599
MaeII ACGT 3 cut(s) 225, 377, 640
MaeIII GTNAC 9 cut(s) 169, 228, 291, 373, 493, 595, 647, 694, 700
MalI GATC 4 cut(s) 179, 564, 709, 765
MboI GATC 4 cut(s) 177, 562, 707, 763
MboII GAAGA 5 cut(s) 37, 227, 311, 364, 830
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 2 cut(s) 266, 389
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 5 cut(s) 12, 517, 654, 718, 753
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 2 cut(s) 534, 735
MnlI CCTC 6 cut(s) 21, 70, 127, 357, 567, 669
Mox20I TGGCCA 1 cut(s) 729
MroI TCCGGA 2 cut(s) 559, 760
MroXI GAANNNNTTC 2 cut(s) 419, 452
MscI TGGCCA 1 cut(s) 729
MseI TTAA 4 cut(s) 128, 425, 744, 862
MslI CAYNNNNRTG 2 cut(s) 543, 744
Msp20I TGGCCA 1 cut(s) 729
MspCI CTTAAG 1 cut(s) 424
MspI CCGG 7 cut(s) 86, 212, 236, 560, 662, 685, 761
MspR9I CCNGG 6 cut(s) 212, 260, 606, 663, 685, 686
MvaI CCWGG 2 cut(s) 260, 606
MwoI GCNNNNNNNGC 1 cut(s) 407
NciI CCSGG 4 cut(s) 212, 663, 685, 686
NdeII GATC 4 cut(s) 177, 562, 707, 763
NlaIII CATG 3 cut(s) 410, 467, 619
NlaIV GGNNCC 2 cut(s) 386, 709
NmuCI GTSAC 5 cut(s) 228, 291, 373, 647, 700
NspI RCATGY 1 cut(s) 619
PasI CCCWGGG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 801
PdmI GAANNNNTTC 2 cut(s) 419, 452
PfeI GAWTC 2 cut(s) 66, 182
PflFI GACNNNGTC 1 cut(s) 247
PflMI CCANNNNNTGG 2 cut(s) 157, 644
PkrI GCNGC 4 cut(s) 10, 534, 735, 776
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 226
PshAI GACNNNNGTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 258, 604
PspEI GGTNACC 2 cut(s) 291, 647
PspGI CCWGG 2 cut(s) 258, 604
PspN4I GGNNCC 2 cut(s) 386, 709
PspPI GGNCC 2 cut(s) 526, 628
PstI CTGCAG 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 115
PsuI RGATCY 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 247
RsaI GTAC 2 cut(s) 140, 209
RsaNI GTAC 2 cut(s) 139, 208
RseI CAYNNNNRTG 2 cut(s) 543, 744
SapI GCTCTTC 1 cut(s) 347
SaqAI TTAA 4 cut(s) 128, 425, 744, 862
SatI GCNGC 4 cut(s) 9, 533, 734, 775
Sau3AI GATC 4 cut(s) 177, 562, 707, 763
Sau96I GGNCC 2 cut(s) 526, 628
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 6 cut(s) 212, 260, 606, 663, 685, 686
SduI GDGCHC 2 cut(s) 266, 389
SetI ASST 7 cut(s) 58, 138, 228, 289, 380, 643, 842
SfaNI GCATC 3 cut(s) 381, 472, 599
SfcI CTRYAG 1 cut(s) 116
SmaI CCCGGG 1 cut(s) 686
SmiMI CAYNNNNRTG 2 cut(s) 543, 744
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 5 cut(s) 12, 517, 654, 718, 753
SsiI CCGC 1 cut(s) 775
StyD4I CCNGG 6 cut(s) 210, 258, 604, 661, 683, 684
StyI CCWWGG 2 cut(s) 156, 287
TaaI ACNGT 3 cut(s) 126, 499, 700
TaiI ACGT 3 cut(s) 228, 380, 643
TaqI TCGA 5 cut(s) 64, 162, 180, 362, 804
TasI AATT 5 cut(s) 12, 517, 654, 718, 753
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 2 cut(s) 66, 182
Tru1I TTAA 4 cut(s) 128, 425, 744, 862
Tru9I TTAA 4 cut(s) 128, 425, 744, 862
TscAI CASTG 2 cut(s) 237, 709
TseFI GTSAC 5 cut(s) 228, 291, 373, 647, 700
TseI GCWGC 3 cut(s) 8, 532, 733
Tsp45I GTSAC 5 cut(s) 228, 291, 373, 647, 700
TspMI CCCGGG 1 cut(s) 684
TspRI CASTG 2 cut(s) 237, 709
Tth111I GACNNNGTC 1 cut(s) 247
Van91I CCANNNNNTGG 2 cut(s) 157, 644
Vha464I CTTAAG 1 cut(s) 424
XapI RAATTY 4 cut(s) 517, 654, 718, 753
XceI RCATGY 1 cut(s) 619
XmaI CCCGGG 1 cut(s) 684
XmnI GAANNNNTTC 2 cut(s) 419, 452
ZraI GACGTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.