AT3G10585
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0022004
Physical Location & Seq
Reverse (-)
3308489 .. 3309509
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10585.1

Sequence Viewer

Length: 498 bp
ATGGCTTTGATTCCGCCGTGGACGAGAGACAATGACAAGCGTTTTGAGTTAGCCCTGGTGATATTCCCTGAGGGCTCGCCGTATTTTTTGGAGTACATTGCCGAGTTTCTACAGAAACCTTTGGAGGAGGTGAAGTACTACTACGACGCAATATTGGTCTATGATGTTGTGCTGATCGAATCGGGTAAGTATGCATTACCCAAGTACCCGGAAGCCTATTACGTGTCACTGACGGAAGCGACTGAGTCCAAACACGGGGAGACGAATCAGATACCGAGGATAATTCCTTGGACAGAAGAGGAACACAGGGAATTTGTGACCTCAACACAAGTAGCAAGTCATGCACAAAAGTATGACAAAAGGCAAAAATTGGACAGTAAGAAGAGGAAACGCTGGAGTGTCCTTGACATAACTTTGGAGTCTACTAAGGGCAAGTCAGATTTTGGGGATGTTGATGATGATGATGTACTGATGTATATATCGGATGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

165

Amino Acids

19.34

Weight (kDa)

4.71

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10580 AT3G10580 AT3G10585 AT4G09450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 422
AciI CCGC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 4 cut(s) 95, 137, 206, 468
AfiI CCNNNNNNNGG 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 222
AjnI CCWGG 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 21, 254
ApoI RAATTY 1 cut(s) 311
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 70, 142
AxyI CCTNAGG 1 cut(s) 69
BaeI ACNNNNGTAYC 2 cut(s) 188, 221
BanII GRGCYC 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 56
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 21, 254
BfmI CTRYAG 1 cut(s) 110
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 56, 209
BmrFI CCNGG 2 cut(s) 56, 209
BpmI CTGGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 223
BsaJI CCNNGG 4 cut(s) 17, 54, 275, 287
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 4 cut(s) 17, 54, 275, 287
BseGI GGATG 2 cut(s) 454, 490
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 60, 234
BseRI GAGGAG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 21, 254
BsmBI CGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 61, 235
BsrDI GCAATG 1 cut(s) 96
BssECI CCNNGG 4 cut(s) 17, 54, 275, 287
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 291, 377
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 69, 243, 426
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 454, 490
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 2 cut(s) 21, 254
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 54, 207
BstSFI CTRYAG 1 cut(s) 110
Bsu36I CCTNAGG 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 454, 490
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 77
CseI GACGC 1 cut(s) 155
Csp6I GTAC 4 cut(s) 94, 136, 205, 467
CviAII CATG 1 cut(s) 341
CviJI RGCY 4 cut(s) 5, 53, 75, 215
CviKI_1 RGCY 4 cut(s) 5, 53, 75, 215
CviQI GTAC 4 cut(s) 94, 136, 205, 467
DdeI CTNAG 3 cut(s) 69, 243, 426
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 291, 377
EarI CTCTTC 2 cut(s) 291, 377
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 1 cut(s) 344
FaiI YATR 7 cut(s) 162, 192, 342, 354, 410, 477, 479
FatI CATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 422
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 415
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 344
HinfI GANTC 5 cut(s) 10, 179, 245, 265, 419
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 70, 142
Hpy166II GTNNAC 2 cut(s) 21, 423
Hpy188I TCNGA 3 cut(s) 270, 439, 484
Hpy8I GTNNAC 2 cut(s) 21, 423
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 194, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 3 cut(s) 69, 243, 426
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 41, 68, 81, 222, 292, 379
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 225, 316
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 308, 394
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 3 cut(s) 282, 311, 368
MlyI GAGTC 2 cut(s) 254, 428
MnlI CCTC 7 cut(s) 64, 118, 121, 270, 292, 331, 378
Mph1103I ATGCAT 1 cut(s) 196
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 56, 209
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 209
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 344
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 225, 316
NsiI ATGCAT 1 cut(s) 196
PfeI GAWTC 3 cut(s) 10, 179, 265
PflFI GACNNNGTC 1 cut(s) 244
PleI GAGTC 2 cut(s) 253, 427
PpsI GAGTC 2 cut(s) 253, 427
Ppu21I YACGTR 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 244
RsaI GTAC 4 cut(s) 95, 137, 206, 468
RsaNI GTAC 4 cut(s) 94, 136, 205, 467
Sau3AI GATC 1 cut(s) 174
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 2 cut(s) 254, 428
ScrFI CCNGG 2 cut(s) 56, 209
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 121, 132, 225, 323
SfcI CTRYAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 282, 311, 368
SsiI CCGC 1 cut(s) 14
SspI AATATT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 54, 207
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 282, 311, 368
TatI WGTACW 3 cut(s) 93, 135, 466
TfiI GAWTC 3 cut(s) 10, 179, 265
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 2 cut(s) 225, 316
Tsp45I GTSAC 2 cut(s) 225, 316
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 234
Tth111I GACNNNGTC 1 cut(s) 244
XapI RAATTY 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.