AT4G09450
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0022004
Physical Location & Seq
Forward (+)
5983277 .. 5984531
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09450.1

Sequence Viewer

Length: 603 bp
ATGGCCGCGTTTCCGCAGTGGACAAGGGTCGATGACAAACGTTTTGAGTTAGCTCTGCTTCAAATCCCGGAGGGTTCGCCGAATTTTATAGAGAATATCGCCTATTATCTCCAGAAACCGGTGAAGGAGGTGGAGTACTACTACTGCGCGTTGGTCCATGATATTGAGCGGATCGAATCGGGTAAGTATGTTTTGCCCAAATACCCGGAAGACGATTACGTGAAACTGACGGAAGCAGGTGAGTCTAAGGGCAATGGGAAAAAGACGGGAATTCCTTGGTCAGAAGAGGAACAGAGGTTGTTTCTGGAAGGACTAAATAAGTTTGGGAAAGGAGACTGGAAGAACATATCGAGGTATTGTGTGAAGTCAAGGACCTCGACGCAAGTGGCAAGCCATGCTCAGAAGTATTTTGCAAGGCAAAAGCAGGAGAGTACGAATACTAAACGCCCGAGTATTCATGACATGACTCTGGGAGTTGCGGTCAATGTCCCTGGATCCAACTTGGAGTCTACTGGCCAGCAACCACATTTTGGTGATCAAATTCCTTCGAATCAATATTATCCCTCCCAGGAAAACTTTCGGGGTTTTGATCAGCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

200

Amino Acids

23.11

Weight (kDa)

6.91

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 92 - 137 4.2e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10580 AT3G10580 AT3G10585 AT4G09450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 530
AccBSI CCGCTC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 509
AccII CGCG 2 cut(s) 8, 149
AciI CCGC 4 cut(s) 6, 14, 169, 479
AclI AACGTT 1 cut(s) 40
AclWI GGATC 3 cut(s) 179, 489, 502
AcoI YGGCCR 2 cut(s) 3, 514
AcsI RAATTY 3 cut(s) 82, 270, 540
AfaI GTAC 2 cut(s) 137, 433
AfiI CCNNNNNNNGG 2 cut(s) 118, 530
AgeI ACCGGT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 2 cut(s) 490, 567
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 3 cut(s) 179, 489, 502
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 2 cut(s) 3, 514
ApoI RAATTY 3 cut(s) 82, 270, 540
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AsiGI ACCGGT 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 154, 372
AsuC2I CCSGG 2 cut(s) 68, 206
AsuHPI GGTGA 3 cut(s) 133, 251, 545
AsuII TTCGAA 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 2 cut(s) 154, 372
BalI TGGCCA 1 cut(s) 516
BamHI GGATCC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 216
BccI CCATC 1 cut(s) 591
BciT130I CCWGG 2 cut(s) 492, 569
BclI TGATCA 2 cut(s) 535, 589
BcnI CCSGG 2 cut(s) 68, 206
BcoDI GTCTC 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 4 cut(s) 68, 206, 492, 569
Bme18I GGWCC 2 cut(s) 154, 372
BmeT110I CYCGRG 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 154, 372
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 4 cut(s) 68, 206, 492, 569
BoxI GACNNNNGTC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 548
BpuMI CCSGG 2 cut(s) 68, 206
BsaAI YACGTR 1 cut(s) 220
BsaJI CCNNGG 3 cut(s) 275, 490, 567
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 465, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 530
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 341, 517
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 492, 569
BseDI CCNNGG 3 cut(s) 275, 490, 567
BseLI CCNNNNNNNGG 2 cut(s) 118, 530
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 2 cut(s) 341, 517
Bsh1236I CGCG 2 cut(s) 8, 149
BshFI GGCC 2 cut(s) 5, 516
BshTI ACCGGT 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 3 cut(s) 68, 119, 206
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 2 cut(s) 118, 530
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 2 cut(s) 5, 516
BsoBI CYCGRG 1 cut(s) 448
Bsp119I TTCGAA 1 cut(s) 548
Bsp143I GATC 4 cut(s) 171, 494, 535, 589
BspACI CCGC 4 cut(s) 6, 14, 169, 479
BspANI GGCC 2 cut(s) 5, 516
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 2 cut(s) 8, 149
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 3 cut(s) 179, 489, 502
BspT104I TTCGAA 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 2 cut(s) 341, 517
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 3 cut(s) 275, 490, 567
BssMI GATC 4 cut(s) 171, 494, 535, 589
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 492, 569
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 391, 518
BstDEI CTNAG 2 cut(s) 246, 399
BstFNI CGCG 2 cut(s) 8, 149
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 4 cut(s) 174, 497, 538, 592
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 4 cut(s) 171, 494, 535, 589
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 2 cut(s) 492, 569
BstPAI GACNNNNGTC 1 cut(s) 26
BstSCI CCNGG 4 cut(s) 66, 204, 490, 567
BstUI CGCG 2 cut(s) 8, 149
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BsuRI GGCC 2 cut(s) 5, 516
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 391, 518
CciI TCATGA 1 cut(s) 457
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 154, 372
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 136, 432
CspAI ACCGGT 1 cut(s) 118
CviAII CATG 4 cut(s) 158, 395, 458, 463
CviJI RGCY 4 cut(s) 5, 53, 393, 516
CviKI_1 RGCY 4 cut(s) 5, 53, 393, 516
CviQI GTAC 2 cut(s) 136, 432
DdeI CTNAG 2 cut(s) 246, 399
DpnI GATC 4 cut(s) 173, 496, 537, 591
DpnII GATC 4 cut(s) 171, 494, 535, 589
EaeI YGGCCR 2 cut(s) 3, 514
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 154, 372
Eco88I CYCGRG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 490, 567
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 4 cut(s) 161, 398, 461, 466
FaiI YATR 7 cut(s) 89, 159, 189, 347, 396, 459, 464
FaqI GGGAC 1 cut(s) 473
FatI CATG 4 cut(s) 157, 394, 457, 462
FbaI TGATCA 2 cut(s) 535, 589
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 2 cut(s) 5, 516
HapII CCGG 3 cut(s) 68, 119, 206
HgaI GACGC 1 cut(s) 388
HhaI GCGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 161, 398, 461, 466
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 5 cut(s) 176, 242, 466, 506, 550
HpaII CCGG 3 cut(s) 68, 119, 206
HphI GGTGA 3 cut(s) 133, 251, 545
Hpy166II GTNNAC 2 cut(s) 21, 510
Hpy188I TCNGA 2 cut(s) 283, 402
Hpy188III TCNNGA 3 cut(s) 112, 305, 458
Hpy8I GTNNAC 2 cut(s) 21, 510
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 3 cut(s) 118, 302, 555
HpyCH4IV ACGT 2 cut(s) 40, 219
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 2 cut(s) 246, 399
HpySE526I ACGT 2 cut(s) 40, 219
Hsp92II CATG 4 cut(s) 161, 398, 461, 466
HspAI GCGC 1 cut(s) 147
Ksp22I TGATCA 2 cut(s) 535, 589
Kzo9I GATC 4 cut(s) 171, 494, 535, 589
MaeII ACGT 2 cut(s) 40, 219
MalI GATC 4 cut(s) 173, 496, 537, 591
MbiI CCGCTC 1 cut(s) 169
MboI GATC 4 cut(s) 171, 494, 535, 589
MboII GAAGA 3 cut(s) 221, 296, 352
MflI RGATCY 1 cut(s) 494
MlsI TGGCCA 1 cut(s) 516
MluCI AATT 3 cut(s) 82, 270, 540
MluNI TGGCCA 1 cut(s) 516
MlyI GAGTC 3 cut(s) 251, 460, 515
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 7 cut(s) 64, 121, 280, 288, 345, 385, 574
Mox20I TGGCCA 1 cut(s) 516
MroXI GAANNNNTTC 1 cut(s) 576
MscI TGGCCA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 531
Msp20I TGGCCA 1 cut(s) 516
MspI CCGG 3 cut(s) 68, 119, 206
MspR9I CCNGG 4 cut(s) 68, 206, 492, 569
MvaI CCWGG 2 cut(s) 492, 569
MvnI CGCG 2 cut(s) 8, 149
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 2 cut(s) 68, 206
NdeII GATC 4 cut(s) 171, 494, 535, 589
NlaIII CATG 4 cut(s) 161, 398, 461, 466
NlaIV GGNNCC 1 cut(s) 496
NspV TTCGAA 1 cut(s) 548
PagI TCATGA 1 cut(s) 457
PaqCI CACCTGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 176, 550
PflMI CCANNNNNTGG 1 cut(s) 530
PfoI TCCNGGA 1 cut(s) 66
PinAI ACCGGT 1 cut(s) 118
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 250, 460, 514
PpsI GAGTC 3 cut(s) 250, 460, 514
Ppu21I YACGTR 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 372
PshAI GACNNNNGTC 1 cut(s) 26
Psp1406I AACGTT 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 490, 567
PspGI CCWGG 2 cut(s) 490, 567
PspN4I GGNNCC 1 cut(s) 496
PspPI GGNCC 2 cut(s) 154, 372
PspPPI RGGWCCY 1 cut(s) 372
PsuI RGATCY 1 cut(s) 494
RsaI GTAC 2 cut(s) 137, 433
RsaNI GTAC 2 cut(s) 136, 432
RseI CAYNNNNRTG 1 cut(s) 531
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 171, 494, 535, 589
Sau96I GGNCC 2 cut(s) 154, 372
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 3 cut(s) 251, 460, 515
ScrFI CCNGG 4 cut(s) 68, 206, 492, 569
SetI ASST 8 cut(s) 43, 55, 132, 222, 241, 299, 356, 377
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 2 cut(s) 154, 372
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 3 cut(s) 82, 270, 540
SsiI CCGC 4 cut(s) 6, 14, 169, 479
SspI AATATT 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 66, 204, 490, 567
StyI CCWWGG 1 cut(s) 275
TaiI ACGT 2 cut(s) 43, 222
TaqI TCGA 5 cut(s) 30, 174, 350, 377, 548
TasI AATT 3 cut(s) 82, 270, 540
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 176, 550
TscAI CASTG 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 23
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 154, 372
XapI RAATTY 3 cut(s) 82, 270, 540
XmiI GTMKAC 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 576
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.