AT3G22250

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014132
Physical Location & Seq
Forward (+)
7867753 .. 7870229
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22250.1

Sequence Viewer

Length: 1386 bp
ATGAAAGTAACACAAAAGCCAAAGATAATATTCATCCCTTATCCGGCGCAAGGCCACGTCACTCCGATGCTTCACCTTGCATCGGCTTTCCTCAGCCGTGGATTCTCCCCTGTCGTTATGACTCCCGAGTCTATCCACCGTAGGATCTCGGCTACTAACGAGGATCTTGGGATCACGTTCTTGGCCTTATCTGACGGTCAAGATCGTCCGGACGCACCTCCCTCGGACTTCTTCTCGATAGAGAACTCAATGGAGAACATCATGCCACCACAGCTCGAACGGCTCCTACTAGAAGAAGACTTGGATGTGGCTTGTGTTGTGGTTGATTTGCTGGCTTCGTGGGCTATAGGAGTGGCTGATCGGTGTGGAGTTCCGGTCGCCGGATTCTGGCCGGTGATGTTCGCTGCTTACCGTTTGATCCAAGCAATACCGGAGCTAGTCCGAACAGGCTTAGTTTCCCAAAAAGGTTGTCCTCGTCAACTAGAAAAAACAATAGTCCAGCCAGAGCAACCGCTCCTATCCGCAGAAGATCTACCGTGGCTGATCGGAACTCCCAAAGCTCAGAAAAAACGATTCAAGTTCTGGCAAAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGACAAGCTCCTTTAAAGATGAATATGAAGATGTCGACAACCACAAAGCATCCTACAAAAAATCTAACGATTTAAACAAAGAAAACAATGGTCAAAACCCTCAAATCCTTCATTTAGGTCCATTGCATAACCAAGAAGCAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATGTCTTGTCTAGGTTGGCTTCAAGAACAAAACCCGAACTCAGTCATTTATATCTCATTTGGAAGTTGGGTTTCTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGTTGGAAGCGTCAGGGAGACCTTTCCTTTGGGCGTTAAACCGAGTGTGGCAAGAGGGACTACCACCAGGTTTTGTGCATAGAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAAGTTCTTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACTATGGAGGCAGTGGCAAGTTCCCGGAGGCTACTATGTTATCCGGTGGCCGGAGACCAGTTTGTTAACTGTAAATACATCGTGGACGTTTGGAAGATTGGAGTGAGATTGAGCGGGTTTGGAGAGAAGGAGGTTGAAGATGGACTAAGGAAAGTAATGGAGGATCAAGATATGGGTGAGAGATTGAGGAAGTTAAGAGACAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTTACATTTTTAAAAAACGAGCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

461

Amino Acids

52.15

Weight (kDa)

6.13

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 281 - 431 9.6e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22250
fragaria_vesca FvH4_6g39710
malus_domestica MD09G1137500.v1.1 MD17G1127800.v1.1
prunus_persica Prupe.3G187400_v2.0.a1
pyrus_communis pycom17g12010
rosa_chinensis RchiOBHm_Chr2g0153791
rosa_laevigata RLG00000020724
rosa_multiflora Rmu_sc0011717.1_g000002 Rmu_sc0038427.1_g000001
rosa_roxburghii Rroxscaffold_2G00094750
rosa_rugosa Rorug02G0441800.1
rosa_samantha Rh2AG505800 Rh2BG515400 Rh2CG491300 Rh2DG527800
rosa_wichuraiana Rw2G041500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AccBSI CCGCTC 2 cut(s) 514, 1227
AccI GTMKAC 1 cut(s) 660
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 4 cut(s) 512, 522, 1049, 1227
AclI AACGTT 1 cut(s) 911
AclWI GGATC 7 cut(s) 152, 171, 179, 412, 629, 1040, 1284
AcoI YGGCCR 2 cut(s) 389, 1161
AcsI RAATTY 1 cut(s) 1354
AfiI CCNNNNNNNGG 6 cut(s) 43, 50, 82, 380, 387, 1163
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 5 cut(s) 577, 833, 908, 1058, 1250
AhlI ACTAGT 1 cut(s) 791
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 988
AluBI AGCT 6 cut(s) 274, 436, 560, 633, 1334, 1378
AluI AGCT 6 cut(s) 274, 436, 560, 633, 1334, 1378
Alw26I GTCTC 5 cut(s) 617, 934, 1042, 1161, 1305
AlwI GGATC 7 cut(s) 152, 171, 179, 412, 629, 1040, 1284
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 4 cut(s) 52, 183, 389, 1161
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 1354
ArsI GACNNNNNNTTYG 6 cut(s) 454, 486, 595, 627, 933, 965
Asp700I GAANNNNTTC 1 cut(s) 1072
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 743
AsuC2I CCSGG 1 cut(s) 1138
AsuHPI GGTGA 3 cut(s) 65, 406, 1301
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 1048
BbsI GAAGAC 2 cut(s) 303, 813
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 391
BccI CCATC 1 cut(s) 1247
BceAI ACGGC 2 cut(s) 81, 296
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 1 cut(s) 990
BcnI CCSGG 1 cut(s) 1138
BcoDI GTCTC 5 cut(s) 617, 934, 1042, 1161, 1305
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 6 cut(s) 290, 437, 482, 596, 792, 821
BfmI CTRYAG 2 cut(s) 345, 888
BglII AGATCT 1 cut(s) 529
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 990, 1138
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 2 cut(s) 284, 1047
BmrFI CCNGG 2 cut(s) 990, 1138
BmsI GCATC 3 cut(s) 57, 89, 683
BpiI GAAGAC 2 cut(s) 303, 813
Bpu10I CCTNAGC 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 1138
BsaAI YACGTR 1 cut(s) 1090
BsaI GGTCTC 2 cut(s) 934, 1161
BsaJI CCNNGG 4 cut(s) 97, 222, 536, 1024
BsaWI WCCGGW 4 cut(s) 208, 373, 430, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 50, 82, 380, 387, 1163
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 1171
Bse3DI GCAATG 2 cut(s) 746, 1326
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 4 cut(s) 97, 222, 536, 1024
BseGI GGATG 4 cut(s) 33, 310, 674, 1088
BseLI CCNNNNNNNGG 6 cut(s) 43, 50, 82, 380, 387, 1163
BseMI GCAATG 2 cut(s) 746, 1326
BseMII CTCAG 3 cut(s) 106, 575, 864
BseNI ACTGG 1 cut(s) 1171
BseXI GCAGC 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 4 cut(s) 54, 185, 391, 1163
BsiEI CGRYCG 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 9 cut(s) 44, 209, 374, 381, 392, 431, 1138, 1157, 1164
BslFI GGGAC 1 cut(s) 993
BslI CCNNNNNNNGG 6 cut(s) 43, 50, 82, 380, 387, 1163
BsmAI GTCTC 5 cut(s) 617, 934, 1042, 1161, 1305
BsmBI CGTCTC 1 cut(s) 1042
BsmFI GGGAC 1 cut(s) 993
BsnI GGCC 4 cut(s) 54, 185, 391, 1163
Bso31I GGTCTC 2 cut(s) 934, 1161
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp13I TCCGGA 1 cut(s) 208
BspACI CCGC 4 cut(s) 512, 522, 1049, 1227
BspANI GGCC 4 cut(s) 54, 185, 391, 1163
BspCNI CTCAG 3 cut(s) 105, 574, 863
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 284, 1047
BspPI GGATC 7 cut(s) 152, 171, 179, 412, 629, 1040, 1284
BspTNI GGTCTC 2 cut(s) 934, 1161
BsrBI CCGCTC 2 cut(s) 514, 1227
BsrDI GCAATG 2 cut(s) 746, 1326
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 1 cut(s) 1171
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 4 cut(s) 97, 222, 536, 1024
BssT1I CCWWGG 1 cut(s) 1024
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 5 cut(s) 140, 197, 413, 537, 1184
BstBAI YACGTR 1 cut(s) 1090
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 6 cut(s) 92, 451, 561, 850, 1064, 1259
BstDSI CCRYGG 2 cut(s) 97, 536
BstF5I GGATG 4 cut(s) 33, 310, 674, 1088
BstHHI GCGC 1 cut(s) 49
BstMAI GTCTC 5 cut(s) 617, 934, 1042, 1161, 1305
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 4 cut(s) 271, 280, 341, 929
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 1 cut(s) 814
BstSCI CCNGG 2 cut(s) 988, 1136
BstSFI CTRYAG 2 cut(s) 345, 888
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 2 cut(s) 303, 813
BstX2I RGATCY 4 cut(s) 144, 163, 529, 621
BstYI RGATCY 4 cut(s) 144, 163, 529, 621
BsuRI GGCC 4 cut(s) 54, 185, 391, 1163
BtgI CCRYGG 2 cut(s) 97, 536
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 4 cut(s) 33, 310, 674, 1088
BtsI GCAGTG 1 cut(s) 1131
BtsIMutI CAGTG 1 cut(s) 1131
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 743
CseI GACGC 2 cut(s) 221, 921
CsiI ACCWGGT 1 cut(s) 988
CviAII CATG 3 cut(s) 262, 811, 1041
DdeI CTNAG 6 cut(s) 92, 451, 561, 850, 1064, 1259
DraI TTTAAA 3 cut(s) 640, 699, 1368
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 389, 1161
Eco130I CCWWGG 1 cut(s) 1024
Eco24I GRGCYC 1 cut(s) 1048
Eco31I GGTCTC 2 cut(s) 934, 1161
Eco47I GGWCC 1 cut(s) 743
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 1024
EcoT38I GRGCYC 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 1024
Esp3I CGTCTC 1 cut(s) 1042
FaeI CATG 3 cut(s) 265, 814, 1044
FaqI GGGAC 1 cut(s) 993
FatI CATG 3 cut(s) 261, 810, 1040
FauI CCCGC 1 cut(s) 1220
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 4 cut(s) 20, 317, 661, 1095
FriOI GRGCYC 1 cut(s) 1048
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 6 cut(s) 290, 437, 482, 596, 792, 821
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 405
HaeIII GGCC 4 cut(s) 54, 185, 391, 1163
HapII CCGG 9 cut(s) 44, 209, 374, 381, 392, 431, 1138, 1157, 1164
HgaI GACGC 2 cut(s) 221, 921
HhaI GCGC 1 cut(s) 49
Hin1II CATG 3 cut(s) 265, 814, 1044
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 3 cut(s) 479, 661, 1180
HindII GTYRAC 3 cut(s) 479, 661, 1180
HinfI GANTC 9 cut(s) 102, 121, 128, 384, 573, 896, 1005, 1073, 1093
HpaI GTTAAC 1 cut(s) 1180
HpaII CCGG 9 cut(s) 44, 209, 374, 381, 392, 431, 1138, 1157, 1164
HphI GGTGA 3 cut(s) 65, 406, 1301
Hpy166II GTNNAC 4 cut(s) 479, 661, 1180, 1198
Hpy188I TCNGA 7 cut(s) 66, 193, 226, 443, 548, 564, 1348
Hpy188III TCNNGA 8 cut(s) 125, 200, 209, 235, 596, 625, 833, 1280
Hpy8I GTNNAC 4 cut(s) 479, 661, 1180, 1198
HpyAV CCTTC 3 cut(s) 743, 1023, 1234
HpyCH4III ACNGT 5 cut(s) 140, 197, 413, 537, 1184
HpyCH4IV ACGT 5 cut(s) 57, 176, 911, 1089, 1200
HpyCH4V TGCA 3 cut(s) 80, 751, 1000
HpyF10VI GCNNNNNNNGC 4 cut(s) 271, 280, 341, 929
HpyF3I CTNAG 6 cut(s) 92, 451, 561, 850, 1064, 1259
HpySE526I ACGT 5 cut(s) 57, 176, 911, 1089, 1200
Hsp92II CATG 3 cut(s) 265, 814, 1044
HspAI GCGC 1 cut(s) 47
Kpn2I TCCGGA 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 1180
LmnI GCTCC 5 cut(s) 288, 433, 519, 638, 1051
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 3 cut(s) 57, 89, 683
MabI ACCWGGT 1 cut(s) 988
MaeI CTAG 6 cut(s) 290, 437, 482, 596, 792, 821
MaeII ACGT 5 cut(s) 57, 176, 911, 1089, 1200
MaeIII GTNAC 5 cut(s) 7, 58, 1006, 1085, 1090
MbiI CCGCTC 2 cut(s) 514, 1227
MboII GAAGA 9 cut(s) 223, 305, 308, 539, 665, 815, 818, 1219, 1262
MflI RGATCY 4 cut(s) 144, 163, 529, 621
MhlI GDGCHC 1 cut(s) 1048
MluCI AATT 3 cut(s) 1011, 1354, 1381
MlyI GAGTC 4 cut(s) 115, 137, 1014, 1087
MmeI TCCRAC 2 cut(s) 599, 906
MroI TCCGGA 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 1072
MseI TTAA 7 cut(s) 639, 698, 959, 1179, 1307, 1367, 1380
MslI CAYNNNNRTG 1 cut(s) 65
MspI CCGG 9 cut(s) 44, 209, 374, 381, 392, 431, 1138, 1157, 1164
MspR9I CCNGG 2 cut(s) 990, 1138
MvaI CCWGG 1 cut(s) 990
MwoI GCNNNNNNNGC 4 cut(s) 271, 280, 341, 929
NciI CCSGG 1 cut(s) 1138
NlaIII CATG 3 cut(s) 265, 814, 1044
NlaIV GGNNCC 2 cut(s) 284, 1047
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 3 cut(s) 58, 1006, 1090
NspI RCATGY 1 cut(s) 814
PciI ACATGT 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 1072
PfeI GAWTC 5 cut(s) 102, 384, 573, 896, 1073
PfoI TCCNGGA 1 cut(s) 1136
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 4 cut(s) 115, 136, 1013, 1087
PpsI GAGTC 4 cut(s) 115, 136, 1013, 1087
Ppu21I YACGTR 1 cut(s) 1090
PscI ACATGT 1 cut(s) 810
Psp1406I AACGTT 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 988
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 2 cut(s) 284, 1047
PspPI GGNCC 1 cut(s) 743
PsrI GAACNNNNNNTAC 2 cut(s) 270, 302
PsuI RGATCY 4 cut(s) 144, 163, 529, 621
RseI CAYNNNNRTG 1 cut(s) 65
SalI GTCGAC 1 cut(s) 659
SaqAI TTAA 7 cut(s) 639, 698, 959, 1179, 1307, 1367, 1380
SatI GCNGC 1 cut(s) 405
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 4 cut(s) 115, 137, 1014, 1087
ScrFI CCNGG 2 cut(s) 990, 1138
SduI GDGCHC 1 cut(s) 1048
SexAI ACCWGGT 1 cut(s) 988
SfaNI GCATC 3 cut(s) 57, 89, 683
SfcI CTRYAG 2 cut(s) 345, 888
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 791
Sse9I AATT 3 cut(s) 1011, 1354, 1381
SsiI CCGC 4 cut(s) 512, 522, 1049, 1227
SspI AATATT 2 cut(s) 30, 904
SspMI CTAG 6 cut(s) 290, 437, 482, 596, 792, 821
StyD4I CCNGG 2 cut(s) 988, 1136
StyI CCWWGG 1 cut(s) 1024
TaaI ACNGT 5 cut(s) 140, 197, 413, 537, 1184
TaiI ACGT 5 cut(s) 60, 179, 914, 1092, 1203
TaqI TCGA 4 cut(s) 236, 276, 660, 1112
TasI AATT 3 cut(s) 1011, 1354, 1381
TfiI GAWTC 5 cut(s) 102, 384, 573, 896, 1073
Tru1I TTAA 7 cut(s) 639, 698, 959, 1179, 1307, 1367, 1380
Tru9I TTAA 7 cut(s) 639, 698, 959, 1179, 1307, 1367, 1380
TscAI CASTG 1 cut(s) 1131
TseFI GTSAC 3 cut(s) 58, 1006, 1090
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 3 cut(s) 58, 1006, 1090
TspDTI ATGAA 7 cut(s) 17, 22, 660, 666, 725, 1344, 1367
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 1 cut(s) 1131
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 1 cut(s) 1354
XbaI TCTAGA 1 cut(s) 595
XceI RCATGY 1 cut(s) 814
XmiI GTMKAC 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 1072
XspI CTAG 6 cut(s) 290, 437, 482, 596, 792, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.